Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1443290 .. 1445599

Gene Structure 2310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGATCGGTGCTGGCATTTACGGATGATGCGGTTCTACCCGCCAGTCTTGTTTTTGATGCATTAAGGGAGCTTGGGAATGGAGCTTCGGATAAGTGTGAACCTCAAATTATCACTCAAGTGTCTTCCTTGAGTCAGCTGCCACAGGGGACTTCCTCTATCGACATTGTGGTTGCCCTTTGCAGATCAATTGAATTCCTGAGTGAGCAGTTGTTGAAGGAGACCTCAAGAGTCTTGAAGCCTGGTGGAACCATCCTAGTTTACAAGACTTCTGAAACAGATAAGACCACCTCTGTTCTAGAGCGCAAGTTACTTTTGTCTGGTTTCCTACCAGCACAAGCTCTTCAAACAAAATCATCTGAGTTGTGCTCTGGAGTCAAGGCCAAAAAGCCTTCTTGGAAAATTGGCTCTTCCTTTGCCTTAAAAAAGCCTTCAAAAACTCTACCGAAGTTGCAGATCGATGATGATTCAGATCTGATTGATGAGGATAGTCTATTAACGGAAGAGGACTTGAAGAAACCGCAGCCGGTCGTAGCTGATGATTGTGAAGTTGGAAGCACAAGGAAAGCTTGTAAAAATTGCACTTGTGGGAGGGCTGAAGCGGAGCAAAAAGTAGAGAAGTTACAATCCACTGTGGATTTGAGCAGTTTCCAGTCAGCATGTGGAAGTTGTGGACTAGGGGATGCTTTCCGATGCGCTACATGTCCTTATAAGGGTCTTCCTCCATTCAAAACAGGCGAGAAGGTAGCGTTCTCTTCAAACTTCCTTGCAGCAGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIAPIN1 Methyltransf_11

Protein Analysis

260

Amino Acids

27.81

Weight (kDa)

5.29

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anamorsin_N	PF20922	38 - 119	1.6e-06	Anamorsin, N-terminal
CIAPIN1	PF05093	205 - 250	8.8e-15	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18400 AT5G18400 AT5G18400
fragaria_vesca	FvH4_4g36731
malus_domestica	MD13G1007600.v1.1 MD16G1000500.v1.1
prunus_persica	Prupe.1G345400_v2.0.a1 Prupe.1G345400_v2.0.a1 Prupe.8G036300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449691 RchiOBHm_Chr4g0446451
rosa_laevigata	RLG00000005660 RLG00000025805
rosa_multiflora	Rmu_sc0005526.1_g000008 Rmu_sc0009629.1_g000006 Rmu_sc0033369.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386890
rosa_samantha	Rh4AG433100 Rh4BG442300 Rh4CG459600 Rh4DG441000
rosa_wichuraiana	Rw3G001740 Rw4G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
AciI	CCGC	4 cut(s)	32, 42, 521, 602
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	8 cut(s)	194, 217, 238, 347, 435, 514, 730, 759
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	6 cut(s)	73, 86, 139, 341, 536, 569
AluI	AGCT	6 cut(s)	73, 86, 139, 341, 536, 569
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	3 cut(s)	139, 523, 770
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	306, 698
BbsI	GAAGAC	2 cut(s)	117, 710
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	126, 535
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	3 cut(s)	257, 299, 677
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	3 cut(s)	140, 524, 771
BlsI	GCNGC	3 cut(s)	141, 525, 772
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	4 cut(s)	19, 49, 673, 683
BpiI	GAAGAC	2 cut(s)	117, 710
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	1 cut(s)	393
BpuEI	CTTGAG	3 cut(s)	102, 151, 211
Bsa29I	ATCGAT	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	2 cut(s)	45, 652
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	459
BseGI	GGATG	3 cut(s)	31, 252, 688
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMII	CTCAG	2 cut(s)	191, 351
BseNI	ACTGG	2 cut(s)	45, 652
BseXI	GCAGC	2 cut(s)	126, 535
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	5, 185, 456, 472
BspACI	CCGC	4 cut(s)	32, 42, 521, 602
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	2 cut(s)	192, 352
BspDI	ATCGAT	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	2 cut(s)	348, 415
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	45, 652
BssAI	RCCGGY	1 cut(s)	526
BssMI	GATC	4 cut(s)	5, 185, 456, 472
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	4 cut(s)	348, 415, 498, 760
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	200, 360
BstF5I	GGATG	3 cut(s)	31, 252, 688
BstHHI	GCGC	2 cut(s)	306, 698
BstKTI	GATC	4 cut(s)	8, 188, 459, 475
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	4 cut(s)	5, 185, 456, 472
BstMCI	CGRYCG	1 cut(s)	531
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	2 cut(s)	663, 705
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	126, 535
BstV2I	GAAGAC	2 cut(s)	117, 710
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	383
BsuTUI	ATCGAT	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	31, 252, 688
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	2 cut(s)	306, 698
Cfr10I	RCCGGY	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	459
CviAII	CATG	2 cut(s)	660, 702
DdeI	CTNAG	2 cut(s)	200, 360
DpnI	GATC	4 cut(s)	7, 187, 458, 474
DpnII	GATC	4 cut(s)	5, 185, 456, 472
Eam1104I	CTCTTC	4 cut(s)	348, 415, 498, 760
EarI	CTCTTC	4 cut(s)	348, 415, 498, 760
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	64
FaeI	CATG	2 cut(s)	663, 705
FaiI	YATR	5 cut(s)	661, 703, 711, 779, 781
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	659, 701
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	140, 524, 771
FokI	GGATG	3 cut(s)	38, 239, 695
Fsp4HI	GCNGC	3 cut(s)	140, 524, 771
FspBI	CTAG	3 cut(s)	257, 299, 677
GlaI	GCGC	2 cut(s)	305, 697
GluI	GCNGC	3 cut(s)	140, 524, 771
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	527
HhaI	GCGC	2 cut(s)	306, 698
Hin1II	CATG	2 cut(s)	663, 705
Hin6I	GCGC	2 cut(s)	304, 696
HinP1I	GCGC	2 cut(s)	304, 696
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	4 cut(s)	133, 231, 375, 467
HpaII	CCGG	1 cut(s)	527
Hpy166II	GTNNAC	3 cut(s)	101, 262, 674
Hpy188I	TCNGA	6 cut(s)	91, 274, 361, 472, 477, 692
Hpy188III	TCNNGA	5 cut(s)	199, 228, 235, 299, 372
Hpy8I	GTNNAC	3 cut(s)	101, 262, 674
HpyAV	CCTTC	4 cut(s)	211, 402, 441, 736
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4V	TGCA	5 cut(s)	62, 183, 454, 582, 770
HpyF3I	CTNAG	2 cut(s)	200, 360
Hsp92II	CATG	2 cut(s)	663, 705
HspAI	GCGC	2 cut(s)	304, 696
Kzo9I	GATC	4 cut(s)	5, 185, 456, 472
LguI	GCTCTTC	2 cut(s)	348, 415
LmnI	GCTCC	3 cut(s)	70, 83, 604
Lsp1109I	GCAGC	2 cut(s)	126, 535
LweI	GCATC	4 cut(s)	19, 49, 673, 683
MaeI	CTAG	3 cut(s)	257, 299, 677
MaeIII	GTNAC	2 cut(s)	309, 621
MalI	GATC	4 cut(s)	7, 187, 458, 474
MboI	GATC	4 cut(s)	5, 185, 456, 472
MboII	GAAGA	7 cut(s)	117, 335, 402, 515, 526, 710, 747
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	5 cut(s)	108, 189, 194, 402, 577
MlyI	GAGTC	3 cut(s)	142, 240, 384
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	8 cut(s)	114, 166, 235, 301, 478, 499, 585, 732
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	3 cut(s)	65, 422, 497
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	5, 185, 456, 472
NlaIII	CATG	2 cut(s)	663, 705
NlaIV	GGNNCC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	663, 705
OliI	CACNNNNGTG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	701
PciSI	GCTCTTC	2 cut(s)	348, 415
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	141, 525, 772
PleI	GAGTC	3 cut(s)	141, 239, 383
PpsI	GAGTC	3 cut(s)	141, 239, 383
PscI	ACATGT	1 cut(s)	701
PsiI	TTATAA	1 cut(s)	711
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	119
SapI	GCTCTTC	2 cut(s)	348, 415
SaqAI	TTAA	3 cut(s)	65, 422, 497
SatI	GCNGC	3 cut(s)	140, 524, 771
Sau3AI	GATC	4 cut(s)	5, 185, 456, 472
SchI	GAGTC	3 cut(s)	142, 240, 384
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	4 cut(s)	19, 49, 673, 683
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	3 cut(s)	117, 130, 226
SmoI	CTYRAG	3 cut(s)	117, 130, 226
Sse9I	AATT	5 cut(s)	108, 189, 194, 402, 577
SsiI	CCGC	4 cut(s)	32, 42, 521, 602
SspMI	CTAG	3 cut(s)	257, 299, 677
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	634
TaqI	TCGA	2 cut(s)	162, 459
TasI	AATT	5 cut(s)	108, 189, 194, 402, 577
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	65, 422, 497
Tru9I	TTAA	3 cut(s)	65, 422, 497
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	3 cut(s)	139, 523, 770
TspGWI	ACGGA	2 cut(s)	38, 515
TspRI	CASTG	1 cut(s)	637
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	2 cut(s)	663, 705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XspI	CTAG	3 cut(s)	257, 299, 677
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.