FvH4_4g36830

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005626
Physical Location & Seq
Forward (+)
33575413 .. 33578017
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36830.t1

Sequence Viewer

Length: 828 bp
ATGCAAAGCAAGGGAGGCTCCATCAATCCCAAAGCTGCATTGAAGCTTGATCACTTGCAGAGGCTAGCTTTATGGACTGGTGGGGAGACTTCTATTCCCTCTTTGGGGGCCTTCTTTGGGCACAAGTTGGCTTCTACTCAAGAGGGTCTGGATGTGCCCGCTGACCTTTCTATGGTTTCTTGCCAGAGATGTGAAACAGTTCTGCAGCCTGGCTTCAACTGTACTATTCGAATTGAAAAAAATAGGGCAAAGGCACGACGAAGAAGTAAGAAGCCCGCTAATTTCACTTTCACCCAGAACAATGTAGTGTATACATGTCACTTCTGTTCTGAAAGGAATGTGAAGAGAGGGACTTCACGTGGACATGTGAAAGCGATATGCCCCTCAAAGATAAAAAAAGCTTCAGATTTGAAACCTGCTAAATACATTTCTCAGAAGTTTGCCACCCCAAAGAAGACCAATGCAGATGAGGTTAAGGTTAGTAAATTGAAAACCAGAACTCCAACTCCGGATGAAGAGATTCCTACTGTGGATAAGATCGTCACTTCAACAACAATAGATGAAGATATTCCTACTGTGGACAGTCCTACAACTCCCATGGTGAAACCTGTGGTTACTTTGTTGGACTCGAAGAGGAAGAAGAGAAACAGATCAGTATCAAAGAAACGACCTGAACCCGAAACCAGTCCTGCCCCAGCAGATGCAGAGAACTCCACCAGCACGACAAACAAACGGAGGAGAAAATCATGGACTAGTTTGAAGGAACTCGCTGAAAGAAATGAGCAGAAGAAAAACATCAGTGATCTGTCAATCCCTTTCTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

276

Amino Acids

30.62

Weight (kDa)

9.99

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 16 - 110 8.2e-13 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccI GTMKAC 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 2 cut(s) 159, 276
AcuI CTGAAG 1 cut(s) 387
AcvI CACGTG 1 cut(s) 359
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 4 cut(s) 104, 105, 117, 172
AflIII ACRYGT 2 cut(s) 314, 364
AgsI TTSAA 7 cut(s) 43, 217, 236, 412, 490, 549, 760
AhlI ACTAGT 1 cut(s) 752
AjnI CCWGG 1 cut(s) 208
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
AluBI AGCT 4 cut(s) 35, 46, 68, 401
AluI AGCT 4 cut(s) 35, 46, 68, 401
Alw26I GTCTC 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 35, 205
Asp700I GAANNNNTTC 3 cut(s) 198, 519, 567
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 283, 613
AsuII TTCGAA 1 cut(s) 229
AsuNHI GCTAGC 1 cut(s) 64
BaeGI GKGCMC 2 cut(s) 123, 159
BbrPI CACGTG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 22, 217
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 80
BcuI ACTAGT 1 cut(s) 752
BfaI CTAG 2 cut(s) 65, 753
BfmI CTRYAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 2 cut(s) 36, 206
BlsI GCNGC 2 cut(s) 37, 207
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 19, 109
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 691
BmtI GCTAGC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 461
Bpu14I TTCGAA 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 655
BsaJI CCNNGG 1 cut(s) 597
BsaWI WCCGGW 1 cut(s) 508
BsaXI ACNNNNNCTCC 4 cut(s) 484, 490, 514, 520
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 105, 117, 172
Bse1I ACTGG 2 cut(s) 82, 684
Bse8I GATNNNNATC 1 cut(s) 655
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 2 cut(s) 157, 517
BseJI GATNNNNATC 1 cut(s) 655
BseLI CCNNNNNNNGG 4 cut(s) 104, 105, 117, 172
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 82, 684
BseRI GAGGAG 1 cut(s) 751
BseSI GKGCMC 2 cut(s) 123, 159
BseXI GCAGC 2 cut(s) 22, 217
BseYI CCCAGC 1 cut(s) 694
BshFI GGCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 4 cut(s) 104, 105, 117, 172
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 123, 159
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 49, 537, 650, 802
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 2 cut(s) 159, 276
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 445
BspEI TCCGGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 19, 109
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 229
BsrI ACTGG 2 cut(s) 82, 684
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 4 cut(s) 49, 537, 650, 802
BssNAI GTATAC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 597
Bst1107I GTATAC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 5 cut(s) 199, 221, 529, 577, 584
Bst6I CTCTTC 4 cut(s) 338, 510, 626, 635
BstBAI YACGTR 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 66, 159, 276
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 2 cut(s) 157, 517
BstKTI GATC 4 cut(s) 52, 540, 653, 805
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 4 cut(s) 49, 537, 650, 802
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 2 cut(s) 318, 368
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 203
BstSLI GKGCMC 2 cut(s) 123, 159
BstV1I GCAGC 2 cut(s) 22, 217
BstV2I GAAGAC 1 cut(s) 461
BstZ17I GTATAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 2 cut(s) 157, 517
BtsIMutI CAGTG 1 cut(s) 805
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 66, 159, 276
Cfr13I GGNCC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 222
CviAII CATG 4 cut(s) 315, 365, 598, 747
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 432
DpnI GATC 4 cut(s) 51, 539, 652, 804
DpnII GATC 4 cut(s) 49, 537, 650, 802
Eam1104I CTCTTC 4 cut(s) 338, 510, 626, 635
EarI CTCTTC 4 cut(s) 338, 510, 626, 635
Eco130I CCWWGG 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 387
Eco72I CACGTG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 4 cut(s) 318, 368, 601, 750
FaiI YATR 8 cut(s) 73, 173, 312, 316, 366, 379, 599, 748
FaqI GGGAC 1 cut(s) 364
FatI CATG 4 cut(s) 314, 364, 597, 746
FauI CCCGC 2 cut(s) 166, 283
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 36, 206
FokI GGATG 2 cut(s) 164, 524
Fsp4HI GCNGC 2 cut(s) 36, 206
FspBI CTAG 2 cut(s) 65, 753
GluI GCNGC 2 cut(s) 36, 206
GsaI CCCAGC 1 cut(s) 698
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 509
Hin1II CATG 4 cut(s) 318, 368, 601, 750
HindIII AAGCTT 2 cut(s) 44, 399
HinfI GANTC 2 cut(s) 520, 626
HpaII CCGG 1 cut(s) 509
HphI GGTGA 2 cut(s) 283, 613
Hpy166II GTNNAC 3 cut(s) 312, 362, 580
Hpy188I TCNGA 3 cut(s) 331, 406, 435
Hpy188III TCNNGA 3 cut(s) 140, 149, 509
Hpy8I GTNNAC 3 cut(s) 312, 362, 580
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 2 cut(s) 121, 754
HpyCH4III ACNGT 5 cut(s) 199, 221, 529, 577, 584
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 6 cut(s) 4, 38, 58, 205, 464, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 4 cut(s) 318, 368, 601, 750
Kpn2I TCCGGA 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 4 cut(s) 49, 537, 650, 802
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 2 cut(s) 22, 217
LweI GCATC 1 cut(s) 691
MaeI CTAG 2 cut(s) 65, 753
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 3 cut(s) 317, 541, 613
MalI GATC 4 cut(s) 51, 539, 652, 804
MboI GATC 4 cut(s) 49, 537, 650, 802
MboII GAAGA 9 cut(s) 273, 355, 466, 527, 575, 643, 649, 652, 799
MhlI GDGCHC 2 cut(s) 123, 159
MluCI AATT 3 cut(s) 231, 280, 485
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 2 cut(s) 527, 603
MnlI CCTC 9 cut(s) 8, 54, 109, 136, 341, 394, 463, 627, 729
MroI TCCGGA 1 cut(s) 508
MroXI GAANNNNTTC 3 cut(s) 198, 519, 567
MseI TTAA 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 15
NcoI CCATGG 1 cut(s) 597
NdeII GATC 4 cut(s) 49, 537, 650, 802
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 4 cut(s) 318, 368, 601, 750
NlaIV GGNNCC 2 cut(s) 19, 109
NmuCI GTSAC 2 cut(s) 317, 541
NspI RCATGY 2 cut(s) 318, 368
NspV TTCGAA 1 cut(s) 229
PciI ACATGT 2 cut(s) 314, 364
PdmI GAANNNNTTC 3 cut(s) 198, 519, 567
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 2 cut(s) 37, 207
PleI GAGTC 1 cut(s) 620
PmaCI CACGTG 1 cut(s) 359
PmlI CACGTG 1 cut(s) 359
PpsI GAGTC 1 cut(s) 620
Ppu21I YACGTR 1 cut(s) 359
PscI ACATGT 2 cut(s) 314, 364
Psp6I CCWGG 1 cut(s) 208
PspCI CACGTG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 694
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 19, 109
PspPI GGNCC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 207
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 36, 206
Sau3AI GATC 4 cut(s) 49, 537, 650, 802
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 123, 159
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SpeI ACTAGT 1 cut(s) 752
Sse9I AATT 3 cut(s) 231, 280, 485
SsiI CCGC 2 cut(s) 159, 276
SspMI CTAG 2 cut(s) 65, 753
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 5 cut(s) 199, 221, 529, 577, 584
TaiI ACGT 1 cut(s) 361
TaqI TCGA 2 cut(s) 229, 629
TasI AATT 3 cut(s) 231, 280, 485
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 2 cut(s) 317, 541
TseI GCWGC 2 cut(s) 35, 205
Tsp45I GTSAC 2 cut(s) 317, 541
TspDTI ATGAA 2 cut(s) 528, 576
TspGWI ACGGA 1 cut(s) 748
TspRI CASTG 1 cut(s) 805
XceI RCATGY 2 cut(s) 318, 368
XmiI GTMKAC 1 cut(s) 311
XmnI GAANNNNTTC 3 cut(s) 198, 519, 567
XspI CTAG 2 cut(s) 65, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.