Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029952.1

Orthogroup ID

OG0005626

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2656

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029952.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 715 bp

tgaaactgactgtaaatccccagatgttgcaaatggacgtcaggatacaaatctcaagggcggcaagccttttcactggccagatgatgctgtccgtgcagctactgctctggagaaggcctcacatgattccctctcctccgattaccagaagtataaccaaaaattgcggtcattgtcctacaatctctcgaaacaagtggtgctagcccgccgtctgctaagtggagagttagagccttcaactatactaaatatgtcaccagatgagttaaaggagggtttaacagctgaggagagagcaatgaaggagcctgatgagtcagagcgtatgcagatgactgatgcgcgttgcacaagatgttcggagctcaaagtaggagtgagaaacatcattcaagcaggacatggtgctcgctatgagttggagtgtactgcctgtggtaatatgtggtatgccgctcgagatgcagtttctatgcttactattgacacaccaagttcaaacaagaatgttggtactgttccattggccactgctaaatttgaagatgttgagaagaagctggtcagtccccgtgaatctgacaagacagcagctcccgaaactataaaaaagactactgaagcatatatgcccatcttagaggcacaaagatcatttggtaagtctaaaagggaagaaaactctgaatctgcaaagaatgctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH DUF3527 TFIIS_M

Protein Analysis

237

Amino Acids

26.28

Weight (kDa)

5.83

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11560 AT4G11560
fragaria_vesca	FvH4_4g24221 FvH4_4g36830 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390
malus_domestica	MD06G1082900.v1.1 MD14G1104300.v1.1
prunus_persica	Prupe.5G100000_v2.0.a1 Prupe.5G100000_v2.0.a1
pyrus_communis	pycom06g07970 pycom06g07980 pycom14g10050
rosa_chinensis	RchiOBHm_Chr7g0197721
rosa_laevigata	RLG00000003917 RLG00000015451
rosa_multiflora	Rmu_sc0006732.1_g000010 Rmu_sc0029951.1_g000001 Rmu_sc0029952.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258270
rosa_rugosa	Rorug07G0042600
rosa_samantha	Rh7AG166900 Rh7BG169000 Rh7CG175400 Rh7DG168700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	462
AccII	CGCG	1 cut(s)	350
AciI	CCGC	4 cut(s)	61, 170, 212, 460
AcoI	YGGCCR	2 cut(s)	78, 532
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	646
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	434, 521
AgsI	TTSAA	4 cut(s)	244, 399, 505, 549
AluBI	AGCT	5 cut(s)	102, 291, 371, 566, 600
AluI	AGCT	5 cut(s)	102, 291, 371, 566, 600
Alw21I	GWGCWC	2 cut(s)	373, 416
AlwNI	CAGNNNCTG	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	3 cut(s)	78, 118, 532
ApeKI	GCWGC	2 cut(s)	99, 597
ApoI	RAATTY	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	463
BalI	TGGCCA	2 cut(s)	80, 534
BanII	GRGCYC	1 cut(s)	373
Bbv12I	GWGCWC	2 cut(s)	373, 416
BbvCI	CCTCAGC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	111, 609
BccI	CCATC	1 cut(s)	648
BceAI	ACGGC	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	62, 100, 460, 598
BlsI	GCNGC	4 cut(s)	63, 101, 461, 599
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	3 cut(s)	77, 335, 458
BmtI	GCTAGC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	283, 700
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	2 cut(s)	128, 309
BseXI	GCAGC	2 cut(s)	111, 609
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	80, 120, 534
BsiHKAI	GWGCWC	2 cut(s)	373, 416
BsiHKCI	CYCGRG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	559
BsmFI	GGGAC	1 cut(s)	559
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	3 cut(s)	80, 120, 534
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	373, 416
Bsp143I	GATC	1 cut(s)	657
BspACI	CCGC	4 cut(s)	61, 170, 212, 460
BspANI	GGCC	3 cut(s)	80, 120, 534
BspCNI	CTCAG	2 cut(s)	284, 701
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	313
BspOI	GCTAGC	1 cut(s)	210
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	657
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	12, 524
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	2 cut(s)	105, 705
BstC8I	GCNNGC	4 cut(s)	66, 208, 212, 416
BstDEI	CTNAG	4 cut(s)	222, 292, 644, 709
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	1 cut(s)	660
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 105, 468, 705
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	111, 609
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	80, 120, 534
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	74, 535
Cac8I	GCNNGC	4 cut(s)	66, 208, 212, 416
CaiI	CAGNNNCTG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	433, 520
CviAII	CATG	2 cut(s)	126, 408
CviQI	GTAC	2 cut(s)	433, 520
DdeI	CTNAG	4 cut(s)	222, 292, 644, 709
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	2 cut(s)	78, 532
Ecl136II	GAGCTC	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	646
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	2 cut(s)	129, 411
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	2 cut(s)	125, 407
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	62, 100, 460, 598
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	4 cut(s)	62, 100, 460, 598
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	4 cut(s)	62, 100, 460, 598
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	80, 120, 534
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	129, 411
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	4 cut(s)	129, 321, 582, 693
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	5 cut(s)	143, 326, 368, 587, 692
Hpy188III	TCNNGA	5 cut(s)	42, 111, 191, 465, 603
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	3 cut(s)	110, 250, 302
HpyCH4III	ACNGT	2 cut(s)	12, 524
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	6 cut(s)	30, 99, 335, 355, 471, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 105, 468, 705
HpyF3I	CTNAG	4 cut(s)	222, 292, 644, 709
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	129, 411
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	3 cut(s)	311, 368, 605
Lsp1109I	GCAGC	2 cut(s)	111, 609
LweI	GCATC	3 cut(s)	77, 335, 458
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	659
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	1 cut(s)	657
MboII	GAAGA	3 cut(s)	561, 572, 693
MhlI	GDGCHC	2 cut(s)	373, 416
MlsI	TGGCCA	2 cut(s)	80, 534
MluCI	AATT	2 cut(s)	165, 543
MluNI	TGGCCA	2 cut(s)	80, 534
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	6 cut(s)	131, 144, 149, 272, 287, 641
Mox20I	TGGCCA	2 cut(s)	80, 534
MscI	TGGCCA	2 cut(s)	80, 534
MseI	TTAA	2 cut(s)	273, 285
Msp20I	TGGCCA	2 cut(s)	80, 534
MspA1I	CMGCKG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	710
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	4 cut(s)	96, 105, 468, 705
NdeII	GATC	1 cut(s)	657
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	129, 411
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	120
PctI	GAATGC	1 cut(s)	710
PfeI	GAWTC	3 cut(s)	129, 582, 693
PkrI	GCNGC	4 cut(s)	63, 101, 461, 599
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	434, 521
RsaNI	GTAC	2 cut(s)	433, 520
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	273, 285
SatI	GCNGC	4 cut(s)	62, 100, 460, 598
Sau3AI	GATC	1 cut(s)	657
SchI	GAGTC	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	373, 416
SetI	ASST	6 cut(s)	41, 104, 293, 373, 568, 602
SfaNI	GCATC	3 cut(s)	77, 335, 458
Sfr274I	CTCGAG	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	463
SmlI	CTYRAG	2 cut(s)	54, 463
SmoI	CTYRAG	2 cut(s)	54, 463
Sse9I	AATT	2 cut(s)	165, 543
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	4 cut(s)	61, 170, 212, 460
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	12, 524
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	192, 464
TasI	AATT	2 cut(s)	165, 543
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	2 cut(s)	64, 462
TfiI	GAWTC	3 cut(s)	129, 582, 693
Tru1I	TTAA	2 cut(s)	273, 285
Tru9I	TTAA	2 cut(s)	273, 285
TscAI	CASTG	2 cut(s)	81, 542
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	99, 597
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	81, 542
XapI	RAATTY	1 cut(s)	543
XhoI	CTCGAG	1 cut(s)	463
XspI	CTAG	1 cut(s)	207
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.