Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005626

Physical Location & Seq

Genomic Coordinates Reverse (-)

66160107 .. 66168257

Gene Structure 8151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGAGCAAGAGAGGAGGAGCCAAGAGAGCATCAAACACAACATTTGGGTCAAACAATCCAATTTCACTGGGAGAGGATAAAAAGCAAAGCAAGGGAGGACCCACCAACCCCAAGGCTGCATTGAAGCTCGAGCACTTGCAGAGGCTAGCTTTATGGACCAGTGGGGAAGCTTCTATTCCTTCTTTGGGGGCCTTCTTTGGGCAGAAGTTAGCTTCTACTCAAGAGGGTCTGGATGTGCCCCCTGACCCTTCTCTGATTTCTTGCCAGAGATGTGAAACGATTCTTCAGCCTGGCTTCAACTGCACTATTCGCATTGAAAAAAATAGAGCAAAGCCACGACGAAGAAGTAAGAAGCCCGCTAATTTCACTTTCACTCAGAACAATGTAGTGTATGCATGTCACTTCTGTTCTGAACGGAATGTGAAGAGAGGAACTTCACACGGACATATGAAAGCGATATGCCCCCCGAAGATCAAAAAAGCTTCAACTTTGAAACCTGCTAAGTCCATTTCTCAAAAGTTTGCCACCCCAAAGAAGAGCACTGTTGGTGAAGATAACATTAGTAAATTGAAATCTGGAACTCCAACTGTGGAGGAAGAGATTCTTACTGTGGATAAGTTCATCAATTGTTCAACAAAAGATGAAGAGATTCCTACTGTGGATGGTCCCACAACTCCAATACTGAAACCCGTAATTACTTTGTTGGACTCGAAGAGAAAAAAGAGAAACAAATCGGCGTCCAAGGAACGATCTGAACCTGAAAACAGTGCCGCCCCAGCGGAAGCAGAGAACTCTGTTATCATGACAAACAAACGGAGGAGAAAATCATGGACTAGTTTGAAGGAACTCGCTGAAAGAAGTGAGCAGAAAAAGAACATCAGTGATCTGTCAATCCCTTTCTTTATGCCCATTTACGAACCCTCACCAGCCTCCTATATAAATGACACACTACCCACGTCGTCGGCACCGTTTAAAGCCCATTTTCCAACTGAGAGAGAGAGCTCCGGAGAGAGTGAGAGAGAGAGAAGGTTAACCATTCGAAACGGTGCGTTTTGGCTGGGATGGGGAACAGGAGGTTCGGGCAGATCGCGACGAGCGACGACGAAGAGGAGGACTTCGCGCGGCAGAGCCAGCAGTCGTCGGAGGAACAGGAAGCTGAAGAGAGTGGCGGAGGAGGAGGCGGAGAGGCGGAGGAGTAGGAAGAAGAAGGGAGAGGAAGAGGCCGAAACGGCGCCGGAGGGAGAAGAGGAGGAAGAAGAGGGGGAGGAGGAGGAGGATGAGCTGGAAGCCAAGCCGATTGGGGAGATGGTTAGGATTTCCGGCAAGGGGAGAACTCGGAGGCATCATTACCAGGCTTTTGAGTATGATGGAAACCAATACGAGCTGGAGGATCCGGTTCTTCTAACACCCTCGGATAGAAGAGAGAAGCCTTATGTGGCAATTACTGAGGATATCACTCAGCTCAAAGATGGGAACATGGTGGTGTTAGGGCAATGGTTTTATTGTCCTGAAGAGGCAGAGAAAAAAGGTGGTGGAAACTGGCAGTCACAAGACACAAGGGAGCTGTTCTATAGTTTCCATTGTGATGAGTGTCCAGCAGAATCTGTAATGCATAAATGTGTGGTTCATTTTGTTCCTTTACACAAGCAGCTGCCAAAGCGTAAAGAGCATCCTGGATTAATTGTGCAAAAGGTGTATGACACTGATGGGAAGAAGCTTTGGAAGCTGACTGATAGAGACTATGAAGAAGATAAGCAGCATGAAATTGACTTACTAGTTCAGAAAACTATGCGAAGATTGGTAGATCTTCCTGATATTGAGATTGGAGAACCAACTACTAATCAGGATGATCAATTGAAGAGCAAAAGAAATTTGATTAAAAAGAATATAGCACCCCTTGATATTTCTAGAGTGGAAGAAGCAACACCTAGGCCTGGTAAAAATAAAAAAGCTGAAACACCTGGAAGCTGTATGACTAATTCCTCAGAGTACCATCGTATTTTAGTTGAGCTCAATGCATTAACTGGAGACACACATCGTGATAGATGGTTGGAGAAACTTATAAAAGAGCTACAGTTCATATGCAGTTCTGCTGACAGCATGAACGGAGGTGATAAAAGAAAATCTGGTTCTGATGAAACTGACTGTAAGTCCCCAGATGTTGCAAATGGACGTCAGGATACAAATCTCAAGGGTGGCAAGCCTTTTCACTGGCCAGATGATGCTGTTCGTGCAGCTGCTGCTCTGGAGAAGGCCTCACATGATTCCCTCTCCTCAGATTACCAGAAGTATAACCAAAAATTGCGGTCACTGTCCTACAATCTCTCGAAACAAGTGGTGCTAGCCCGACGTCTGCTAAGTGGAGAGTTAGAGCCTTCAACAATACTAAATATGTCACCAGATGAGTTAAAGGAGGGTTTAACGGCTGAGGAGAGAGCAATGAAGGAGCCTGATGAGTCGGAGCGTATGCAGAGGACTGATGCGCGTTGCACTAGATGTTCAGAGCTCAAAGTAGGAGTGAGAAACATCATTCAAGCAGGACATGGTGCTGGCTATGAGTTGGAGTGTACTGCCTGTGTTTCTATGCTCACTATTGACCCACCAAGTTCAAACAAGAATGTTGGTACTGTTCCATTTGCCACTGCTAAATTTGAAGATGTTGAGAAGAAGCTGGTCAGTCCCCGTGAATCTGACAAGACAGCAGCCCCTGAAACTATCAAAAAGACAGCAGCTCCTGAAGCATATATGCCCGTCTTGGACGCACACAGATCATTTGGTAAGTCTAAAAGGGAAGAAAACTCTGAATCTGCCAAGAATGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH DUF3527 TFIIS_M

Protein Analysis

942

Amino Acids

105.69

Weight (kDa)

8.94

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rpr2	PF04032	43 - 137	1.3e-11	RNAse P Rpr2/Rpp21/SNM1 subunit domain
BAH	PF01426	459 - 576	1.6e-16	BAH domain
TFIIS_M	PF07500	675 - 816	4.4e-14	Transcription factor S-II (TFIIS), central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11560 AT4G11560
fragaria_vesca	FvH4_4g24221 FvH4_4g36830 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390
malus_domestica	MD06G1082900.v1.1 MD14G1104300.v1.1
prunus_persica	Prupe.5G100000_v2.0.a1 Prupe.5G100000_v2.0.a1
pyrus_communis	pycom06g07970 pycom06g07980 pycom14g10050
rosa_chinensis	RchiOBHm_Chr7g0197721
rosa_laevigata	RLG00000003917 RLG00000015451
rosa_multiflora	Rmu_sc0006732.1_g000010 Rmu_sc0029951.1_g000001 Rmu_sc0029952.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258270
rosa_rugosa	Rorug07G0042600
rosa_samantha	Rh7AG166900 Rh7BG169000 Rh7CG175400 Rh7DG168700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2063
AatII	GACGTC	2 cut(s)	2176, 2353
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	2 cut(s)	964, 1231
AccII	CGCG	4 cut(s)	1090, 1120, 1122, 2485
AccIII	TCCGGA	1 cut(s)	1004
AciI	CCGC	8 cut(s)	357, 771, 779, 1122, 1169, 1181, 1189, 2305
AclWI	GGATC	2 cut(s)	1385, 1398
AcoI	YGGCCR	1 cut(s)	2213
AcsI	RAATTY	2 cut(s)	1870, 2648
AcuI	CTGAAG	4 cut(s)	269, 1178, 1530, 2757
AcyI	GRCGYC	4 cut(s)	737, 1232, 2173, 2350
AdeI	CACNNNGTG	1 cut(s)	2039
AfaI	GTAC	3 cut(s)	1991, 2569, 2626
AfiI	CCNNNNNNNGG	4 cut(s)	185, 198, 1326, 1934
AhdI	GACNNNNNGTC	1 cut(s)	2149
AhlI	ACTAGT	2 cut(s)	833, 1774
AjiI	CACGTC	1 cut(s)	957
AjnI	CCWGG	5 cut(s)	289, 1350, 1672, 1933, 1960
Alw21I	GWGCWC	5 cut(s)	135, 542, 1004, 2013, 2508
Alw26I	GTCTC	2 cut(s)	1731, 2022
AlwI	GGATC	2 cut(s)	1385, 1398
AlwNI	CAGNNNCTG	4 cut(s)	1604, 2240, 2708, 2735
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	1004
AoxI	GGCC	5 cut(s)	189, 1221, 1931, 2213, 2253
ApeKI	GCWGC	9 cut(s)	116, 1648, 1651, 1756, 2234, 2237, 2240, 2702, 2729
ApoI	RAATTY	2 cut(s)	1870, 2648
AseI	ATTAAT	1 cut(s)	1679
Asp700I	GAANNNNTTC	3 cut(s)	279, 600, 648
AspA2I	CCTAGG	1 cut(s)	1928
AspLEI	GCGC	3 cut(s)	1122, 1234, 2485
AspS9I	GGNCC	4 cut(s)	98, 156, 189, 665
AsuHPI	GGTGA	4 cut(s)	560, 915, 2123, 2388
AsuII	TTCGAA	1 cut(s)	1039
AsuNHI	GCTAGC	2 cut(s)	145, 2341
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	98, 156, 665
AvrII	CCTAGG	1 cut(s)	1928
BaeGI	GKGCMC	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	2215
BamHI	GGATCC	1 cut(s)	1390
BanI	GGYRCC	2 cut(s)	964, 1231
BanII	GRGCYC	3 cut(s)	1004, 2013, 2508
Bbv12I	GWGCWC	5 cut(s)	135, 542, 1004, 2013, 2508
BbvCI	CCTCAGC	1 cut(s)	2427
BbvI	GCAGC	9 cut(s)	103, 1638, 1660, 1768, 2224, 2227, 2246, 2714, 2741
BccI	CCATC	8 cut(s)	656, 1056, 1300, 1361, 1463, 1700, 2001, 2040
BceAI	ACGGC	2 cut(s)	1245, 2439
BciT130I	CCWGG	5 cut(s)	291, 1352, 1674, 1935, 1962
BciVI	GTATCC	1 cut(s)	2173
BclI	TGATCA	1 cut(s)	1849
BcoDI	GTCTC	2 cut(s)	1731, 2022
BcuI	ACTAGT	2 cut(s)	833, 1774
BfaI	CTAG	7 cut(s)	146, 834, 1775, 1908, 1929, 2342, 2493
BfmI	CTRYAG	2 cut(s)	1570, 2072
BfoI	RGCGCY	1 cut(s)	1235
BfuAI	ACCTGC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	2173
BglI	GCCNNNNNGGC	1 cut(s)	1229
BglII	AGATCT	1 cut(s)	1804
BlnI	CCTAGG	1 cut(s)	1928
Bme1390I	CCNGG	5 cut(s)	291, 1352, 1674, 1935, 1962
Bme18I	GGWCC	3 cut(s)	98, 156, 665
BmeRI	GACNNNNNGTC	1 cut(s)	2149
BmeT110I	CYCGRG	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	957
BmgT120I	GGNCC	4 cut(s)	98, 156, 189, 665
BmiI	GGNNCC	8 cut(s)	19, 100, 190, 667, 966, 1233, 1392, 2448
BmrFI	CCNGG	5 cut(s)	291, 1352, 1674, 1935, 1962
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	5 cut(s)	38, 1351, 1678, 2212, 2470
BmtI	GCTAGC	2 cut(s)	149, 2345
BmuI	ACTGGG	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	2240, 2272
BpmI	CTGGAG	3 cut(s)	1406, 2046, 2267
Bpu10I	CCTNAGC	1 cut(s)	2427
Bpu14I	TTCGAA	1 cut(s)	1039
BpuEI	CTTGAG	2 cut(s)	204, 2174
BsaBI	GATNNNNATC	1 cut(s)	2184
BsaHI	GRCGYC	4 cut(s)	737, 1232, 2173, 2350
BsaJI	CCNNGG	4 cut(s)	111, 741, 1410, 1928
BsaWI	WCCGGW	2 cut(s)	1004, 1393
BsaXI	ACNNNNNCTCC	2 cut(s)	2716, 2746
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 198, 1326, 1934
Bse1I	ACTGG	5 cut(s)	72, 159, 1544, 2029, 2216
Bse3DI	GCAATG	2 cut(s)	1499, 2445
Bse8I	GATNNNNATC	1 cut(s)	2184
BseAI	TCCGGA	1 cut(s)	1004
BseBI	CCWGG	5 cut(s)	291, 1352, 1674, 1935, 1962
BseDI	CCNNGG	4 cut(s)	111, 741, 1410, 1928
BseGI	GGATG	6 cut(s)	238, 667, 1067, 1282, 1669, 1852
BseJI	GATNNNNATC	1 cut(s)	2184
BseLI	CCNNNNNNNGG	4 cut(s)	185, 198, 1326, 1934
BseMI	GCAATG	2 cut(s)	1499, 2445
BseMII	CTCAG	7 cut(s)	389, 981, 1437, 1472, 1998, 2289, 2418
BseNI	ACTGG	5 cut(s)	72, 159, 1544, 2029, 2216
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	9 cut(s)	103, 1638, 1660, 1768, 2224, 2227, 2246, 2714, 2741
BseYI	CCCAGC	2 cut(s)	775, 1057
BsgI	GTGCAG	2 cut(s)	286, 2253
Bsh1236I	CGCG	4 cut(s)	1090, 1120, 1122, 2485
BshFI	GGCC	5 cut(s)	191, 1223, 1933, 2215, 2255
BshNI	GGYRCC	2 cut(s)	964, 1231
BsiHKAI	GWGCWC	5 cut(s)	135, 542, 1004, 2013, 2508
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	4 cut(s)	1005, 1235, 1320, 1394
BslFI	GGGAC	3 cut(s)	651, 2137, 2664
BslI	CCNNNNNNNGG	4 cut(s)	185, 198, 1326, 1934
BsmAI	GTCTC	2 cut(s)	1731, 2022
BsmFI	GGGAC	3 cut(s)	651, 2137, 2664
BsmI	GAATGC	1 cut(s)	2821
BsnI	GGCC	5 cut(s)	191, 1223, 1933, 2215, 2255
BsoBI	CYCGRG	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1286I	GDGCHC	6 cut(s)	135, 240, 542, 1004, 2013, 2508
Bsp13I	TCCGGA	1 cut(s)	1004
Bsp143I	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
Bsp68I	TCGCGA	1 cut(s)	1090
BspACI	CCGC	8 cut(s)	357, 771, 779, 1122, 1169, 1181, 1189, 2305
BspANI	GGCC	5 cut(s)	191, 1223, 1933, 2215, 2255
BspCNI	CTCAG	7 cut(s)	388, 982, 1438, 1471, 1997, 2288, 2419
BspEI	TCCGGA	1 cut(s)	1004
BspFNI	CGCG	4 cut(s)	1090, 1120, 1122, 2485
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	8 cut(s)	19, 100, 190, 667, 966, 1233, 1392, 2448
BspMI	ACCTGC	1 cut(s)	505
BspOI	GCTAGC	2 cut(s)	149, 2345
BspPI	GGATC	2 cut(s)	1385, 1398
BspQI	GCTCTTC	2 cut(s)	530, 1853
BspT104I	TTCGAA	1 cut(s)	1039
BspT107I	GGYRCC	2 cut(s)	964, 1231
BsrDI	GCAATG	2 cut(s)	1499, 2445
BsrI	ACTGG	5 cut(s)	72, 159, 1544, 2029, 2216
BssECI	CCNNGG	4 cut(s)	111, 741, 1410, 1928
BssMI	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
BssNI	GRCGYC	4 cut(s)	737, 1232, 2173, 2350
BssT1I	CCWWGG	3 cut(s)	111, 741, 1928
Bst2UI	CCWGG	5 cut(s)	291, 1352, 1674, 1935, 1962
BstACI	GRCGYC	4 cut(s)	737, 1232, 2173, 2350
BstAPI	GCANNNNNTGC	1 cut(s)	2240
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	6 cut(s)	147, 357, 1132, 2201, 2343, 2551
BstDEI	CTNAG	9 cut(s)	375, 501, 990, 1446, 1458, 1984, 2275, 2357, 2427
BstF5I	GGATG	6 cut(s)	238, 667, 1067, 1282, 1669, 1852
BstFNI	CGCG	4 cut(s)	1090, 1120, 1122, 2485
BstH2I	RGCGCY	1 cut(s)	1235
BstHHI	GCGC	3 cut(s)	1122, 1234, 2485
BstKTI	GATC	8 cut(s)	474, 752, 886, 1088, 1393, 1807, 1852, 2771
BstMAI	GTCTC	2 cut(s)	1731, 2022
BstMBI	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
BstNI	CCWGG	5 cut(s)	291, 1352, 1674, 1935, 1962
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	5 cut(s)	289, 1350, 1672, 1933, 1960
BstSFI	CTRYAG	2 cut(s)	1570, 2072
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	4 cut(s)	1090, 1120, 1122, 2485
BstV1I	GCAGC	9 cut(s)	103, 1638, 1660, 1768, 2224, 2227, 2246, 2714, 2741
BstX2I	RGATCY	2 cut(s)	1390, 1804
BstYI	RGATCY	2 cut(s)	1390, 1804
BsuI	GTATCC	1 cut(s)	2173
BsuRI	GGCC	5 cut(s)	191, 1223, 1933, 2215, 2255
BtrI	CACGTC	1 cut(s)	957
BtsCI	GGATG	6 cut(s)	238, 667, 1067, 1282, 1669, 1852
BtsI	GCAGTG	1 cut(s)	2640
BtsIMutI	CAGTG	9 cut(s)	65, 166, 540, 772, 886, 1701, 2209, 2309, 2640
BtuMI	TCGCGA	1 cut(s)	1090
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	6 cut(s)	147, 357, 1132, 2201, 2343, 2551
CaiI	CAGNNNCTG	4 cut(s)	1604, 2240, 2708, 2735
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	3 cut(s)	1122, 1234, 2485
Cfr13I	GGNCC	4 cut(s)	98, 156, 189, 665
CseI	GACGC	2 cut(s)	726, 2768
Csp6I	GTAC	3 cut(s)	1990, 2568, 2625
CviAII	CATG	8 cut(s)	396, 802, 828, 1477, 1760, 2101, 2261, 2543
CviQI	GTAC	3 cut(s)	1990, 2568, 2625
DdeI	CTNAG	9 cut(s)	375, 501, 990, 1446, 1458, 1984, 2275, 2357, 2427
DinI	GGCGCC	1 cut(s)	1233
DpnI	GATC	8 cut(s)	473, 751, 885, 1087, 1392, 1806, 1851, 2770
DpnII	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
DraI	TTTAAA	1 cut(s)	973
DraIII	CACNNNGTG	1 cut(s)	2039
DriI	GACNNNNNGTC	1 cut(s)	2149
EaeI	YGGCCR	1 cut(s)	2213
Eam1105I	GACNNNNNGTC	1 cut(s)	2149
EciI	GGCGGA	3 cut(s)	1184, 1196, 1204
Ecl136II	GAGCTC	3 cut(s)	1002, 2011, 2506
Eco130I	CCWWGG	3 cut(s)	111, 741, 1928
Eco147I	AGGCCT	2 cut(s)	1933, 2255
Eco24I	GRGCYC	3 cut(s)	1004, 2013, 2508
Eco32I	GATATC	1 cut(s)	1453
Eco47I	GGWCC	3 cut(s)	98, 156, 665
Eco53kI	GAGCTC	3 cut(s)	1002, 2011, 2506
Eco57I	CTGAAG	4 cut(s)	269, 1178, 1530, 2757
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	3 cut(s)	1002, 2011, 2506
EcoO109I	RGGNCCY	2 cut(s)	98, 189
EcoRII	CCWGG	5 cut(s)	289, 1350, 1672, 1933, 1960
EcoRV	GATATC	1 cut(s)	1453
EcoT14I	CCWWGG	3 cut(s)	111, 741, 1928
EcoT22I	ATGCAT	3 cut(s)	397, 1614, 2020
EcoT38I	GRGCYC	3 cut(s)	1004, 2013, 2508
EgeI	GGCGCC	1 cut(s)	1233
EheI	GGCGCC	1 cut(s)	1233
ErhI	CCWWGG	3 cut(s)	111, 741, 1928
FaeI	CATG	8 cut(s)	399, 805, 831, 1480, 1763, 2104, 2264, 2546
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	3 cut(s)	651, 2137, 2664
FatI	CATG	8 cut(s)	395, 801, 827, 1476, 1759, 2100, 2260, 2542
FauI	CCCGC	1 cut(s)	364
FauNDI	CATATG	2 cut(s)	447, 2081
FbaI	TGATCA	1 cut(s)	1849
FokI	GGATG	6 cut(s)	245, 674, 1074, 1289, 1656, 1859
FriOI	GRGCYC	3 cut(s)	1004, 2013, 2508
FspBI	CTAG	7 cut(s)	146, 834, 1775, 1908, 1929, 2342, 2493
GlaI	GCGC	3 cut(s)	1121, 1233, 2484
GsaI	CCCAGC	2 cut(s)	779, 1061
GsuI	CTGGAG	3 cut(s)	1406, 2046, 2267
HaeII	RGCGCY	1 cut(s)	1235
HaeIII	GGCC	5 cut(s)	191, 1223, 1933, 2215, 2255
HapII	CCGG	4 cut(s)	1005, 1235, 1320, 1394
HgaI	GACGC	2 cut(s)	726, 2768
HhaI	GCGC	3 cut(s)	1122, 1234, 2485
Hin1I	GRCGYC	4 cut(s)	737, 1232, 2173, 2350
Hin1II	CATG	8 cut(s)	399, 805, 831, 1480, 1763, 2104, 2264, 2546
Hin6I	GCGC	3 cut(s)	1120, 1232, 2483
HinP1I	GCGC	3 cut(s)	1120, 1232, 2483
HincII	GTYRAC	1 cut(s)	1032
HindII	GTYRAC	1 cut(s)	1032
HindIII	AAGCTT	3 cut(s)	168, 480, 1715
HinfI	GANTC	9 cut(s)	280, 601, 649, 707, 1601, 2264, 2456, 2687, 2804
HpaI	GTTAAC	1 cut(s)	1032
HpaII	CCGG	4 cut(s)	1005, 1235, 1320, 1394
HphI	GGTGA	4 cut(s)	560, 915, 2123, 2388
Hpy166II	GTNNAC	2 cut(s)	1032, 2568
Hpy8I	GTNNAC	2 cut(s)	1032, 2568
Hpy99I	CGWCG	8 cut(s)	342, 961, 964, 1095, 1102, 1105, 1143, 2352
HpyAV	CCTTC	9 cut(s)	189, 202, 258, 835, 1020, 1201, 2245, 2385, 2437
HpyCH4IV	ACGT	3 cut(s)	956, 2173, 2350
HpyF3I	CTNAG	9 cut(s)	375, 501, 990, 1446, 1458, 1984, 2275, 2357, 2427
HpySE526I	ACGT	3 cut(s)	956, 2173, 2350
Hsp92I	GRCGYC	4 cut(s)	737, 1232, 2173, 2350
Hsp92II	CATG	8 cut(s)	399, 805, 831, 1480, 1763, 2104, 2264, 2546
HspAI	GCGC	3 cut(s)	1120, 1232, 2483
KasI	GGCGCC	1 cut(s)	1231
Kpn2I	TCCGGA	1 cut(s)	1004
Ksp22I	TGATCA	1 cut(s)	1849
KspAI	GTTAAC	1 cut(s)	1032
Kzo9I	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
LguI	GCTCTTC	2 cut(s)	530, 1853
LmnI	GCTCC	6 cut(s)	17, 1007, 1561, 2446, 2461, 2737
Lsp1109I	GCAGC	9 cut(s)	103, 1638, 1660, 1768, 2224, 2227, 2246, 2714, 2741
LweI	GCATC	5 cut(s)	38, 1351, 1678, 2212, 2470
MaeI	CTAG	7 cut(s)	146, 834, 1775, 1908, 1929, 2342, 2493
MaeII	ACGT	3 cut(s)	956, 2173, 2350
MaeIII	GTNAC	4 cut(s)	398, 1545, 2307, 2394
MalI	GATC	8 cut(s)	473, 751, 885, 1087, 1392, 1806, 1851, 2770
MboI	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
MfeI	CAATTG	2 cut(s)	625, 1853
MflI	RGATCY	2 cut(s)	1390, 1804
MhlI	GDGCHC	6 cut(s)	135, 240, 542, 1004, 2013, 2508
MlsI	TGGCCA	1 cut(s)	2215
MluNI	TGGCCA	1 cut(s)	2215
Mly113I	GGCGCC	1 cut(s)	1232
MlyI	GAGTC	2 cut(s)	701, 2465
MmeI	TCCRAC	7 cut(s)	608, 684, 1010, 1121, 2031, 2439, 2541
Mox20I	TGGCCA	1 cut(s)	2215
Mph1103I	ATGCAT	3 cut(s)	397, 1614, 2020
MroI	TCCGGA	1 cut(s)	1004
MroXI	GAANNNNTTC	3 cut(s)	279, 600, 648
MscI	TGGCCA	1 cut(s)	2215
MseI	TTAA	7 cut(s)	972, 1031, 1679, 1878, 2021, 2408, 2420
MslI	CAYNNNNRTG	3 cut(s)	1481, 1584, 1617
Msp20I	TGGCCA	1 cut(s)	2215
MspA1I	CMGCKG	3 cut(s)	779, 1651, 2237
MspI	CCGG	4 cut(s)	1005, 1235, 1320, 1394
MspR9I	CCNGG	5 cut(s)	291, 1352, 1674, 1935, 1962
MunI	CAATTG	2 cut(s)	625, 1853
Mva1269I	GAATGC	1 cut(s)	2821
MvaI	CCWGG	5 cut(s)	291, 1352, 1674, 1935, 1962
MvnI	CGCG	4 cut(s)	1090, 1120, 1122, 2485
NarI	GGCGCC	1 cut(s)	1232
NdeI	CATATG	2 cut(s)	447, 2081
NdeII	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
NheI	GCTAGC	2 cut(s)	145, 2341
NlaIII	CATG	8 cut(s)	399, 805, 831, 1480, 1763, 2104, 2264, 2546
NlaIV	GGNNCC	8 cut(s)	19, 100, 190, 667, 966, 1233, 1392, 2448
NmuCI	GTSAC	4 cut(s)	398, 1545, 2307, 2394
NruI	TCGCGA	1 cut(s)	1090
NsiI	ATGCAT	3 cut(s)	397, 1614, 2020
NspI	RCATGY	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	1039
PaeR7I	CTCGAG	1 cut(s)	128
PagI	TCATGA	1 cut(s)	801
PceI	AGGCCT	2 cut(s)	1933, 2255
PciSI	GCTCTTC	2 cut(s)	530, 1853
PcsI	WCGNNNNNNNCGW	2 cut(s)	965, 1094
PctI	GAATGC	1 cut(s)	2821
PdmI	GAANNNNTTC	3 cut(s)	279, 600, 648
PfeI	GAWTC	7 cut(s)	280, 601, 649, 1601, 2264, 2687, 2804
PfoI	TCCNGGA	1 cut(s)	1672
PleI	GAGTC	2 cut(s)	701, 2464
PluTI	GGCGCC	1 cut(s)	1235
PpsI	GAGTC	2 cut(s)	701, 2464
PpuMI	RGGWCCY	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	1679
PsiI	TTATAA	1 cut(s)	2063
Psp124BI	GAGCTC	3 cut(s)	1004, 2013, 2508
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	5 cut(s)	289, 1350, 1672, 1933, 1960
PspFI	CCCAGC	2 cut(s)	775, 1057
PspGI	CCWGG	5 cut(s)	289, 1350, 1672, 1933, 1960
PspN4I	GGNNCC	8 cut(s)	19, 100, 190, 667, 966, 1233, 1392, 2448
PspPI	GGNCC	4 cut(s)	98, 156, 189, 665
PspPPI	RGGWCCY	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	128
PstNI	CAGNNNCTG	4 cut(s)	1604, 2240, 2708, 2735
PsuI	RGATCY	2 cut(s)	1390, 1804
PvuII	CAGCTG	2 cut(s)	1651, 2237
RruI	TCGCGA	1 cut(s)	1090
RsaI	GTAC	3 cut(s)	1991, 2569, 2626
RsaNI	GTAC	3 cut(s)	1990, 2568, 2625
RseI	CAYNNNNRTG	3 cut(s)	1481, 1584, 1617
SacI	GAGCTC	3 cut(s)	1004, 2013, 2508
SapI	GCTCTTC	2 cut(s)	530, 1853
SaqAI	TTAA	7 cut(s)	972, 1031, 1679, 1878, 2021, 2408, 2420
Sau3AI	GATC	8 cut(s)	471, 749, 883, 1085, 1390, 1804, 1849, 2768
Sau96I	GGNCC	4 cut(s)	98, 156, 189, 665
SchI	GAGTC	2 cut(s)	701, 2465
ScrFI	CCNGG	5 cut(s)	291, 1352, 1674, 1935, 1962
SduI	GDGCHC	6 cut(s)	135, 240, 542, 1004, 2013, 2508
SfaNI	GCATC	5 cut(s)	38, 1351, 1678, 2212, 2470
SfcI	CTRYAG	2 cut(s)	1570, 2072
SfoI	GGCGCC	1 cut(s)	1233
Sfr274I	CTCGAG	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	1039
SinI	GGWCC	3 cut(s)	98, 156, 665
SlaI	CTCGAG	1 cut(s)	128
SmiMI	CAYNNNNRTG	3 cut(s)	1481, 1584, 1617
SmlI	CTYRAG	3 cut(s)	128, 219, 2189
SmoI	CTYRAG	3 cut(s)	128, 219, 2189
SpeI	ACTAGT	2 cut(s)	833, 1774
SseBI	AGGCCT	2 cut(s)	1933, 2255
SsiI	CCGC	8 cut(s)	357, 771, 779, 1122, 1169, 1181, 1189, 2305
SspDI	GGCGCC	1 cut(s)	1231
SspMI	CTAG	7 cut(s)	146, 834, 1775, 1908, 1929, 2342, 2493
SstI	GAGCTC	3 cut(s)	1004, 2013, 2508
StuI	AGGCCT	2 cut(s)	1933, 2255
StyD4I	CCNGG	5 cut(s)	289, 1350, 1672, 1933, 1960
StyI	CCWWGG	3 cut(s)	111, 741, 1928
TaiI	ACGT	3 cut(s)	959, 2176, 2353
TaqI	TCGA	4 cut(s)	129, 710, 1039, 2327
TatI	WGTACW	1 cut(s)	2567
TauI	GCSGC	2 cut(s)	773, 1125
TfiI	GAWTC	7 cut(s)	280, 601, 649, 1601, 2264, 2687, 2804
Tru1I	TTAA	7 cut(s)	972, 1031, 1679, 1878, 2021, 2408, 2420
Tru9I	TTAA	7 cut(s)	972, 1031, 1679, 1878, 2021, 2408, 2420
TscAI	CASTG	9 cut(s)	72, 166, 547, 772, 886, 1708, 2216, 2316, 2647
TseFI	GTSAC	4 cut(s)	398, 1545, 2307, 2394
TseI	GCWGC	9 cut(s)	116, 1648, 1651, 1756, 2234, 2237, 2240, 2702, 2729
Tsp45I	GTSAC	4 cut(s)	398, 1545, 2307, 2394
TspGWI	ACGGA	4 cut(s)	430, 456, 829, 2121
TspRI	CASTG	9 cut(s)	72, 166, 547, 772, 886, 1708, 2216, 2316, 2647
VpaK11BI	GGWCC	3 cut(s)	98, 156, 665
VspI	ATTAAT	1 cut(s)	1679
XapI	RAATTY	2 cut(s)	1870, 2648
XbaI	TCTAGA	1 cut(s)	1907
XceI	RCATGY	1 cut(s)	399
XhoI	CTCGAG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	1928
XmnI	GAANNNNTTC	3 cut(s)	279, 600, 648
XspI	CTAG	7 cut(s)	146, 834, 1775, 1908, 1929, 2342, 2493
ZraI	GACGTC	2 cut(s)	2174, 2351
Zsp2I	ATGCAT	3 cut(s)	397, 1614, 2020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.