Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005626

Physical Location & Seq

Genomic Coordinates Forward (+)

13033504 .. 13036796

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07980.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCACTAACTGGAGACACACTACGTGACAGATGGTTGGAGAAACTTCTACAAAATATCCGGCACCACATATGGAACTCTGCTGACACTACAAACGGTATTGAAAAGAGAAAATCTGGCTTTGATGATATTGATCATGAAAGTGACCGTAAGCCCACAGAAGTTGGAAATGGATCTCAGGATAATGTCAAGAGTGGCAACACGTCTTTTCTCTGGCCAGAGGATGCTGTTCGTGCAGTTACTTCTCTAGAGAAGGCTTCGCATGAGTCTCTCTCCTCAGATTTCCTAAAGTATAACCAGAAGTTGCGGCAACTGGGATTCAATCTCCAGAAAAATTCATTCCTAGCCCGTCGTCTGCTAAATCGAGAGTTGGAACCTTTAACGATAGTGAACATGTCACCTGAGGAGTTAAAGGAGGGTTTAACAGCTGAGGAGAGAGCAAAGAAGGAGCCTGATGATTGGGAGCGTATGCAGATGACTGACGCTCGTTGCTCAAGATGCTCAGAGTTCAAAGTGGGAGTTAGGGACATTATTCAAGCAGGACACAGTGCTCGCTATCAGCTGGAGTGTATTGCCTGTGGTCATTCATGGTATGCTGCCCGGGATGCGGTTTCAATGCTCACAATTGATGCACCCAGTTCTAACAAGAATGTGGGGACGGCTCCTTTGGCCACTGCCAAGTTTGAAGATGTTGAAAAGAAGCTGGCGAGCCCACGTGAGCCTGACAAGACAACCAAGGACGCTCTAAGAAAAACAACTGAAGCATATATGCCGGTGTTGGAAGCGCAAAGATCACTTAGCAAGTTCAAAAGGGAAGAAAATTCTGATTCTGCAAAGAAAGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH DUF3527 TFIIS_M

Protein Analysis

283

Amino Acids

31.95

Weight (kDa)

6.63

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11560 AT4G11560
fragaria_vesca	FvH4_4g24221 FvH4_4g36830 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390
malus_domestica	MD06G1082900.v1.1 MD14G1104300.v1.1
prunus_persica	Prupe.5G100000_v2.0.a1 Prupe.5G100000_v2.0.a1
pyrus_communis	pycom06g07970 pycom06g07980 pycom14g10050
rosa_chinensis	RchiOBHm_Chr7g0197721
rosa_laevigata	RLG00000003917 RLG00000015451
rosa_multiflora	Rmu_sc0006732.1_g000010 Rmu_sc0029951.1_g000001 Rmu_sc0029952.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258270
rosa_rugosa	Rorug07G0042600
rosa_samantha	Rh7AG166900 Rh7BG169000 Rh7CG175400 Rh7DG168700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AciI	CCGC	2 cut(s)	307, 608
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	2 cut(s)	215, 669
AcsI	RAATTY	2 cut(s)	334, 820
AcuI	CTGAAG	1 cut(s)	780
AcvI	CACGTG	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflIII	ACRYGT	2 cut(s)	201, 393
AgsI	TTSAA	8 cut(s)	104, 322, 511, 536, 615, 686, 695, 808
AjiI	CACGTC	1 cut(s)	204
AluBI	AGCT	3 cut(s)	428, 562, 703
AluI	AGCT	3 cut(s)	428, 562, 703
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	9, 273
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	2 cut(s)	215, 669
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	334, 820
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspLEI	GCGC	1 cut(s)	787
AsuC2I	CCSGG	2 cut(s)	601, 602
AsuHPI	GGTGA	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	600
AxyI	CCTNAGG	1 cut(s)	402
BalI	TGGCCA	2 cut(s)	217, 671
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	713
BbrPI	CACGTG	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	553
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	675
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	601, 602
BcoDI	GTCTC	2 cut(s)	9, 273
BfaI	CTAG	2 cut(s)	248, 344
BisI	GCNGC	2 cut(s)	308, 597
BlsI	GCNGC	2 cut(s)	309, 598
Bme1390I	CCNGG	2 cut(s)	601, 602
BmeT110I	CYCGRG	1 cut(s)	600
BmgBI	CACGTC	1 cut(s)	204
BmiI	GGNNCC	4 cut(s)	65, 375, 450, 663
BmrFI	CCNGG	2 cut(s)	601, 602
BmrI	ACTGGG	2 cut(s)	323, 630
BmsI	GCATC	4 cut(s)	214, 488, 595, 619
BmuI	ACTGGG	2 cut(s)	323, 630
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	3 cut(s)	33, 311, 584
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	2 cut(s)	601, 602
BsaAI	YACGTR	2 cut(s)	26, 716
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	600, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse118I	RCCGGY	1 cut(s)	772
Bse1I	ACTGG	3 cut(s)	16, 318, 636
Bse21I	CCTNAGG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	600, 735
BseGI	GGATG	2 cut(s)	229, 610
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	5 cut(s)	191, 291, 393, 420, 516
BseNI	ACTGG	3 cut(s)	16, 318, 636
BseRI	GAGGAG	3 cut(s)	265, 419, 446
BseXI	GCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	217, 671
BshNI	GGYRCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	3 cut(s)	61, 601, 773
BslFI	GGGAC	2 cut(s)	539, 670
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	2 cut(s)	9, 273
BsmFI	GGGAC	2 cut(s)	539, 670
BsnI	GGCC	2 cut(s)	217, 671
BsoBI	CYCGRG	1 cut(s)	600
Bsp1286I	GDGCHC	2 cut(s)	553, 713
Bsp143I	GATC	3 cut(s)	133, 173, 791
BspACI	CCGC	2 cut(s)	307, 608
BspANI	GGCC	2 cut(s)	217, 671
BspCNI	CTCAG	5 cut(s)	190, 290, 394, 421, 515
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	4 cut(s)	65, 375, 450, 663
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	772
BsrI	ACTGG	3 cut(s)	16, 318, 636
BssAI	RCCGGY	1 cut(s)	772
BssECI	CCNNGG	2 cut(s)	600, 735
BssMI	GATC	3 cut(s)	133, 173, 791
BssT1I	CCWWGG	1 cut(s)	735
Bst4CI	ACNGT	3 cut(s)	98, 149, 548
BstBAI	YACGTR	2 cut(s)	26, 716
BstC8I	GCNNGC	3 cut(s)	553, 705, 709
BstDEI	CTNAG	7 cut(s)	177, 277, 402, 429, 502, 746, 797
BstF5I	GGATG	2 cut(s)	229, 610
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	3 cut(s)	136, 176, 794
BstMAI	GTCTC	2 cut(s)	9, 273
BstMBI	GATC	3 cut(s)	133, 173, 791
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 498, 605, 668, 839
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	599, 600
BstV1I	GCAGC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	217, 671
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	229, 610
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	2 cut(s)	553, 672
Cac8I	GCNNGC	3 cut(s)	553, 705, 709
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	772
Cfr9I	CCCGGG	1 cut(s)	600
CseI	GACGC	2 cut(s)	491, 749
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	4 cut(s)	137, 263, 394, 588
DdeI	CTNAG	7 cut(s)	177, 277, 402, 429, 502, 746, 797
DpnI	GATC	3 cut(s)	135, 175, 793
DpnII	GATC	3 cut(s)	133, 173, 791
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	2 cut(s)	215, 669
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	780
Eco72I	CACGTG	1 cut(s)	716
Eco81I	CCTNAGG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	713
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	4 cut(s)	140, 266, 397, 591
FaqI	GGGAC	2 cut(s)	539, 670
FatI	CATG	4 cut(s)	136, 262, 393, 587
FauNDI	CATATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	308, 597
FokI	GGATG	2 cut(s)	236, 617
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	2 cut(s)	308, 597
FspBI	CTAG	2 cut(s)	248, 344
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	2 cut(s)	308, 597
GsuI	CTGGAG	3 cut(s)	33, 311, 584
HaeIII	GGCC	2 cut(s)	217, 671
HapII	CCGG	3 cut(s)	61, 601, 773
HgaI	GACGC	2 cut(s)	491, 749
HhaI	GCGC	1 cut(s)	787
Hin1II	CATG	4 cut(s)	140, 266, 397, 591
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HinfI	GANTC	3 cut(s)	266, 318, 827
HpaII	CCGG	3 cut(s)	61, 601, 773
HphI	GGTGA	1 cut(s)	390
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	280, 505, 826
Hpy188III	TCNNGA	7 cut(s)	137, 179, 190, 248, 328, 365, 495
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	2 cut(s)	247, 439
HpyCH4III	ACNGT	3 cut(s)	98, 149, 548
HpyCH4IV	ACGT	3 cut(s)	25, 203, 715
HpyCH4V	TGCA	4 cut(s)	236, 472, 632, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 498, 605, 668, 839
HpyF3I	CTNAG	7 cut(s)	177, 277, 402, 429, 502, 746, 797
HpySE526I	ACGT	3 cut(s)	25, 203, 715
Hsp92II	CATG	4 cut(s)	140, 266, 397, 591
HspAI	GCGC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 173, 791
LmnI	GCTCC	3 cut(s)	448, 463, 667
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	4 cut(s)	214, 488, 595, 619
MaeI	CTAG	2 cut(s)	248, 344
MaeII	ACGT	3 cut(s)	25, 203, 715
MaeIII	GTNAC	4 cut(s)	26, 143, 238, 396
MalI	GATC	3 cut(s)	135, 175, 793
MboI	GATC	3 cut(s)	133, 173, 791
MboII	GAAGA	2 cut(s)	698, 827
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	553, 713
MlsI	TGGCCA	2 cut(s)	217, 671
MluCI	AATT	3 cut(s)	334, 624, 820
MluNI	TGGCCA	2 cut(s)	217, 671
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	4 cut(s)	18, 145, 351, 759
MnlI	CCTC	5 cut(s)	214, 286, 397, 409, 424
Mox20I	TGGCCA	2 cut(s)	217, 671
MscI	TGGCCA	2 cut(s)	217, 671
MseI	TTAA	3 cut(s)	380, 410, 422
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	2 cut(s)	217, 671
MspA1I	CMGCKG	2 cut(s)	428, 562
MspI	CCGG	3 cut(s)	61, 601, 773
MspR9I	CCNGG	2 cut(s)	601, 602
MunI	CAATTG	1 cut(s)	624
MwoI	GCNNNNNNNGC	5 cut(s)	233, 498, 605, 668, 839
NciI	CCSGG	2 cut(s)	601, 602
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	3 cut(s)	133, 173, 791
NlaIII	CATG	4 cut(s)	140, 266, 397, 591
NlaIV	GGNNCC	4 cut(s)	65, 375, 450, 663
NmuCI	GTSAC	3 cut(s)	26, 143, 396
NspI	RCATGY	1 cut(s)	397
PagI	TCATGA	1 cut(s)	136
PciI	ACATGT	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	318, 827
PkrI	GCNGC	2 cut(s)	309, 598
PleI	GAGTC	1 cut(s)	274
PmaCI	CACGTG	1 cut(s)	716
PmlI	CACGTG	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	274
Ppu21I	YACGTR	2 cut(s)	26, 716
PscI	ACATGT	1 cut(s)	393
PspCI	CACGTG	1 cut(s)	716
PspN4I	GGNNCC	4 cut(s)	65, 375, 450, 663
PsuI	RGATCY	1 cut(s)	173
PvuII	CAGCTG	2 cut(s)	428, 562
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	380, 410, 422
SatI	GCNGC	2 cut(s)	308, 597
Sau3AI	GATC	3 cut(s)	133, 173, 791
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	601, 602
SduI	GDGCHC	2 cut(s)	553, 713
SetI	ASST	8 cut(s)	28, 206, 379, 403, 430, 564, 705, 718
SfaNI	GCATC	4 cut(s)	214, 488, 595, 619
SmaI	CCCGGG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	3 cut(s)	334, 624, 820
SsiI	CCGC	2 cut(s)	307, 608
SspMI	CTAG	2 cut(s)	248, 344
StyD4I	CCNGG	2 cut(s)	599, 600
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	3 cut(s)	98, 149, 548
TaiI	ACGT	3 cut(s)	28, 206, 718
TaqI	TCGA	1 cut(s)	364
TasI	AATT	3 cut(s)	334, 624, 820
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	318, 827
Tru1I	TTAA	3 cut(s)	380, 410, 422
Tru9I	TTAA	3 cut(s)	380, 410, 422
TscAI	CASTG	2 cut(s)	553, 679
TseFI	GTSAC	3 cut(s)	26, 143, 396
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	3 cut(s)	26, 143, 396
TspDTI	ATGAA	3 cut(s)	153, 327, 576
TspMI	CCCGGG	1 cut(s)	600
TspRI	CASTG	2 cut(s)	553, 679
XapI	RAATTY	2 cut(s)	334, 820
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	600
XspI	CTAG	2 cut(s)	248, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.