Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029951.1

Orthogroup ID

OG0005626

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1478

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029951.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 562 bp

tgaaactgactgtaaatccccagatgttgcaaatggacgtcaggatacaaatctcaagggcggcaagccttttcactggccagatgatgctgtccgtgcagctactgctctggagaaggcctcacatgattccctctcctccgattaccagaagtataaccaaaaattgcggtcattgtcctacaatctctcgaaacaagtggtgctagcccgccgtctgctaagtggagagttagagccttcaactatactaaatatgtcaccagatgagttaaaggagggtttaacagctgaggagagagcaatgaaggagcctgatgagtcagagcgtatgcagatgactgatgcgcgttgcacaagatgttcggagctcaaagtaggagtgagaaacatcattcaagcaggacatggtgctcgctacgaggttaatgcatttctaaattgtttattagtgtgcgctcaatcatgttcgtggaatgttctgctgtttcaatatgccaaaatttgctggttgaaatataaaatatccatcacttctattatgttaccaaatagcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH DUF3527 TFIIS_M

Protein Analysis

186

Amino Acids

20.9

Weight (kDa)

7.78

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11560 AT4G11560
fragaria_vesca	FvH4_4g24221 FvH4_4g36830 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390
malus_domestica	MD06G1082900.v1.1 MD14G1104300.v1.1
prunus_persica	Prupe.5G100000_v2.0.a1 Prupe.5G100000_v2.0.a1
pyrus_communis	pycom06g07970 pycom06g07980 pycom14g10050
rosa_chinensis	RchiOBHm_Chr7g0197721
rosa_laevigata	RLG00000003917 RLG00000015451
rosa_multiflora	Rmu_sc0006732.1_g000010 Rmu_sc0029951.1_g000001 Rmu_sc0029952.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258270
rosa_rugosa	Rorug07G0042600
rosa_samantha	Rh7AG166900 Rh7BG169000 Rh7CG175400 Rh7DG168700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	350
AciI	CCGC	3 cut(s)	61, 170, 212
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	244, 399, 492, 515
AluBI	AGCT	3 cut(s)	102, 291, 371
AluI	AGCT	3 cut(s)	102, 291, 371
Alw21I	GWGCWC	2 cut(s)	373, 416
AlwNI	CAGNNNCTG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	78, 118
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	502
AspLEI	GCGC	2 cut(s)	350, 459
AsuHPI	GGTGA	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	373
Bbv12I	GWGCWC	2 cut(s)	373, 416
BbvCI	CCTCAGC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	537
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciVI	GTATCC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	207, 560
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	62, 100
BlsI	GCNGC	2 cut(s)	63, 101
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	2 cut(s)	77, 335
BmtI	GCTAGC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	2 cut(s)	128, 309
BseXI	GCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	80, 120
BsiHKAI	GWGCWC	2 cut(s)	373, 416
BsnI	GGCC	2 cut(s)	80, 120
Bsp1286I	GDGCHC	2 cut(s)	373, 416
BspACI	CCGC	3 cut(s)	61, 170, 212
BspANI	GGCC	2 cut(s)	80, 120
BspCNI	CTCAG	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	313
BspOI	GCTAGC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	66, 208, 212, 416
BstDEI	CTNAG	2 cut(s)	222, 292
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	350, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 105
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	80, 120
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	4 cut(s)	66, 208, 212, 416
CaiI	CAGNNNCTG	1 cut(s)	105
CfoI	GCGC	2 cut(s)	350, 459
CseI	GACGC	1 cut(s)	545
CviAII	CATG	3 cut(s)	126, 408, 466
CviJI	RGCY	9 cut(s)	68, 80, 102, 120, 210, 239, 291, 314, 371
CviKI_1	RGCY	9 cut(s)	68, 80, 102, 120, 210, 239, 291, 314, 371
DdeI	CTNAG	2 cut(s)	222, 292
EaeI	YGGCCR	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	371
EcoT22I	ATGCAT	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	3 cut(s)	129, 411, 469
FatI	CATG	3 cut(s)	125, 407, 465
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	62, 100
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	2 cut(s)	62, 100
FspBI	CTAG	2 cut(s)	207, 560
GlaI	GCGC	2 cut(s)	349, 458
GluI	GCNGC	2 cut(s)	62, 100
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	80, 120
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	2 cut(s)	350, 459
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	129, 411, 469
Hin6I	GCGC	2 cut(s)	348, 457
HinP1I	GCGC	2 cut(s)	348, 457
HinfI	GANTC	2 cut(s)	129, 321
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	143, 326, 368
Hpy188III	TCNNGA	3 cut(s)	42, 111, 191
HpyAV	CCTTC	3 cut(s)	110, 250, 302
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	5 cut(s)	30, 99, 335, 355, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 105
HpyF3I	CTNAG	2 cut(s)	222, 292
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	129, 411, 469
HspAI	GCGC	2 cut(s)	348, 457
LmnI	GCTCC	2 cut(s)	311, 368
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	77, 335
MaeI	CTAG	2 cut(s)	207, 560
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	259, 544
MhlI	GDGCHC	2 cut(s)	373, 416
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	3 cut(s)	165, 440, 502
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	131, 144, 149, 272, 287, 416
Mox20I	TGGCCA	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	3 cut(s)	273, 285, 427
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	96, 105
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	129, 411, 469
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	63, 101
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	3 cut(s)	273, 285, 427
SatI	GCNGC	2 cut(s)	62, 100
SchI	GAGTC	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	373, 416
SetI	ASST	5 cut(s)	41, 104, 293, 373, 427
SfaNI	GCATC	2 cut(s)	77, 335
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	165, 440, 502
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	3 cut(s)	61, 170, 212
SspMI	CTAG	2 cut(s)	207, 560
SstI	GAGCTC	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	165, 440, 502
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	3 cut(s)	273, 285, 427
Tru9I	TTAA	3 cut(s)	273, 285, 427
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	502
XspI	CTAG	2 cut(s)	207, 560
ZraI	GACGTC	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.