Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006732.1

Orthogroup ID

OG0005626

Physical Location & Seq

Genomic Coordinates Reverse (-)

53743 .. 62140

Gene Structure 8398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006732.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

atgagcaggagaggaggagccaagagagcatcaaacacaacatttgggtcaaacaatccgatttcactgagagaagacaaaaaccaaagcaagggaggctccaccaaccccaaggctgcattgaagctcgagcacttgcagaggctagctttatggaccagtggggaagcttctattccttctttgggggccttctttgggcagaagttagcttctactcaagagggtctggatgtgccccctgacccttctctgatttcttgccagagatgtgaaacgattcttcagcctggcttcaactgcactattcgcattgaaaaaaatagagcaaaggcacgacgaagaagtaagaaacccgctaatttcactttcactcagaacaatgtagtgtatacatgtcacttttgttctgaacggaatgtgaagagagggacttcacgtggacatatgaaagcgatatgccccccaaagatcaaaaaagcttcaaatttgaaacctgctaaatccatttctcagaagtttgccaccccaaagaagagcactgctggtgaggataacgttagtaaattgaaatccggaactccaactgtggaggaagagattcctattgtggataagttcatcacttcttcaacaaaagatgaagagactcctactgcggatagccccacaactccaatggtgaaacccgcaatcacgttgttggactcaaagagaaaaaagagaaacaaatcggcgtccaagaaacgatctgaacccgaaaacagccccgccccagcagacgcagagaactctttcagcacgacaaacaaacggaggagaaaatcatggactagtttaaaggaactcgctgaaagaagtgagcagaagaaaaacatcagtgatctgtcaatccctttctttatgaggttcgcgcagatcgcgacgagcgacgacgaagaggacgacttcgcgcggcagagccagcagtcgtcggaggaagttccggcgtcgacgaggaagaggaagctgaagagagtggcggaggaggaggaggaggagaggcggaggagtaggaagaagaagaagaagggagaggaagaggctgaaacggcgtcggagggagaagaggaggaggaagaggaggaggaggaggaggatgagctggaagccaagccgattggggagatggttaagatttccggcaaggggagaactcggaggcaacattaccaggcttttgagtatgatggaaaccaatacgagctggaggatccggttcttctaacgccctctgatagaagagagaagccttatgtggcaattattaaggatatcactcagctcaaagatgggaacatggtggtgttagggcaatggttttatcgtcctgaagaggcagagaaaaaagggggtggaaactggcagtcacaagacacaagggagctgttctatagttttcatcgtgatgagtgtccagcagaatctgtgatgcataaatgtgtggttcattttgttcctttacacaagcagctgccaaagcgtaaagagcatcctggattcattgtgcaaaaggtgtatgacaccgatgggaagaagctttggaagctaacagatagagactatgaagaagataagcagcatgaaattgacttactagttcagaaaaccatgcgaagattggtagatcttcctgatattgagattggagatccaactactaatcaggatgatcaattgaagagcaaaagaaatttgattaaaaagaatatagcaccccttgatgtttctagagtggaagaagcaacaactaggcctggtaaaattcaaaaacctgaaacacctggaagctgtatgactaattcctcagagtaccatcgtattttagttgagctcaatgcattaactggagacacacatcgtgacaaatggttggagaagcttataaaagagctacagttcatatgcagttctactgacagcatgaacggaggtgataaaagaaaatgtggttctgatgaaactgactgtaaatccccagatgttgcaaatggacgtcaggatacaaatctcaagggcggcaagccttttcactggccagatgatgctgtccgtgcagctactgctctggagaaggcctcacatgattccctctcctccgattaccagaagtataaccaaaaattgcggtcattgtcctacaatctctcgaaacaagtggtgctagcccgccgtctgctaagtggagagttagagccttcaactatactaaatatgtcaccagatgagttaaaggagggtttaacagctgaggagagagcaatgaaggagcctgatgagtcagagcgtatgcagatgactgatgcgcgttgcacaagatgttcggagctcaaagtaggagtgagaaacatcattcaagcaggacatggtgctcgctatgagttggagtgtactgcctgtggtaatatgtggtatgccgctcgagatgcagtttctatgcttactattgacacaccaagttcaaacaagaatgttggtactgttccattggccactgctaaatttgaagatgttgagaagaagctggtcagtccccgtgaatctgacaagacagcagctcccgaaactataaaaaagactactgaagcatatatgcccatcttagaggcacaaagatcatttggtaagtctaaaagggaagaaaactctgaatctgcaaagaatgctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH DUF3527 TFIIS_M

Protein Analysis

903

Amino Acids

101.95

Weight (kDa)

8.56

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11560 AT4G11560
fragaria_vesca	FvH4_4g24221 FvH4_4g36830 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390 FvH4_5g02390
malus_domestica	MD06G1082900.v1.1 MD14G1104300.v1.1
prunus_persica	Prupe.5G100000_v2.0.a1 Prupe.5G100000_v2.0.a1
pyrus_communis	pycom06g07970 pycom06g07980 pycom14g10050
rosa_chinensis	RchiOBHm_Chr7g0197721
rosa_laevigata	RLG00000003917 RLG00000015451
rosa_multiflora	Rmu_sc0006732.1_g000010 Rmu_sc0029951.1_g000001 Rmu_sc0029952.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258270
rosa_rugosa	Rorug07G0042600
rosa_samantha	Rh7AG166900 Rh7BG169000 Rh7CG175400 Rh7DG168700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1925
AatII	GACGTC	1 cut(s)	2038
Acc36I	ACCTGC	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	2459
AccI	GTMKAC	2 cut(s)	392, 992
AccII	CGCG	5 cut(s)	914, 923, 953, 955, 2347
AccIII	TCCGGA	1 cut(s)	575
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	3 cut(s)	1247, 1260, 1685
AcoI	YGGCCR	2 cut(s)	2075, 2529
AcsI	RAATTY	4 cut(s)	487, 1732, 1803, 2540
AcuI	CTGAAG	4 cut(s)	269, 1031, 1392, 2643
AcvI	CACGTG	1 cut(s)	440
AcyI	GRCGYC	4 cut(s)	737, 989, 1094, 2035
AdeI	CACNNNGTG	1 cut(s)	1901
AfaI	GTAC	3 cut(s)	1853, 2431, 2518
AfiI	CCNNNNNNNGG	4 cut(s)	91, 185, 198, 1188
AflIII	ACRYGT	1 cut(s)	395
AhlI	ACTAGT	2 cut(s)	833, 1636
AjnI	CCWGG	5 cut(s)	289, 1212, 1534, 1795, 1822
Alw21I	GWGCWC	5 cut(s)	135, 542, 1875, 2370, 2413
Alw26I	GTCTC	3 cut(s)	641, 1593, 1884
AlwI	GGATC	3 cut(s)	1247, 1260, 1685
AlwNI	CAGNNNCTG	2 cut(s)	1466, 2102
Ama87I	CYCGRG	2 cut(s)	128, 2460
Aor13HI	TCCGGA	1 cut(s)	575
AoxI	GGCC	5 cut(s)	189, 1793, 2075, 2115, 2529
ApeKI	GCWGC	6 cut(s)	116, 1510, 1513, 1618, 2096, 2594
ApoI	RAATTY	4 cut(s)	487, 1732, 1803, 2540
Asp700I	GAANNNNTTC	3 cut(s)	279, 600, 794
AspLEI	GCGC	3 cut(s)	916, 955, 2347
AspS9I	GGNCC	2 cut(s)	156, 189
AsuHPI	GGTGA	4 cut(s)	560, 694, 1985, 2250
AsuNHI	GCTAGC	2 cut(s)	145, 2203
AvaI	CYCGRG	2 cut(s)	128, 2460
AvaII	GGWCC	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	240
BalI	TGGCCA	2 cut(s)	2077, 2531
BamHI	GGATCC	1 cut(s)	1252
BanII	GRGCYC	2 cut(s)	1875, 2370
BbrPI	CACGTG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	5 cut(s)	135, 542, 1875, 2370, 2413
BbvCI	CCTCAGC	1 cut(s)	2289
BbvI	GCAGC	6 cut(s)	103, 1500, 1522, 1630, 2108, 2606
BccI	CCATC	6 cut(s)	1162, 1223, 1325, 1562, 1863, 2645
BceAI	ACGGC	2 cut(s)	1107, 2196
BciT130I	CCWGG	5 cut(s)	291, 1214, 1536, 1797, 1824
BciVI	GTATCC	1 cut(s)	2035
BclI	TGATCA	1 cut(s)	1711
BcoDI	GTCTC	3 cut(s)	641, 1593, 1884
BcuI	ACTAGT	2 cut(s)	833, 1636
BfaI	CTAG	6 cut(s)	146, 834, 1637, 1770, 1791, 2204
BfmI	CTRYAG	2 cut(s)	1432, 1934
BfuAI	ACCTGC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	2035
BglII	AGATCT	1 cut(s)	1666
BisI	GCNGC	9 cut(s)	117, 956, 1511, 1514, 1619, 2059, 2097, 2457, 2595
BlsI	GCNGC	9 cut(s)	118, 957, 1512, 1515, 1620, 2060, 2098, 2458, 2596
Bme1390I	CCNGG	5 cut(s)	291, 1214, 1536, 1797, 1824
Bme18I	GGWCC	1 cut(s)	156
BmeT110I	CYCGRG	2 cut(s)	128, 2460
BmgT120I	GGNCC	2 cut(s)	156, 189
BmiI	GGNNCC	5 cut(s)	19, 100, 190, 1254, 2310
BmrFI	CCNGG	5 cut(s)	291, 1214, 1536, 1797, 1824
BmsI	GCATC	6 cut(s)	38, 1461, 1540, 2074, 2332, 2455
BmtI	GCTAGC	2 cut(s)	149, 2207
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	2102, 2134
BpmI	CTGGAG	3 cut(s)	1268, 1908, 2129
Bpu10I	CCTNAGC	1 cut(s)	2289
BpuEI	CTTGAG	2 cut(s)	204, 2036
BsaAI	YACGTR	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	2046
BsaHI	GRCGYC	4 cut(s)	737, 989, 1094, 2035
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	2 cut(s)	575, 1255
BsaXI	ACNNNNNCTCC	2 cut(s)	2581, 2611
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 185, 198, 1188
Bse1I	ACTGG	4 cut(s)	159, 1406, 1891, 2078
Bse3DI	GCAATG	2 cut(s)	1361, 2307
Bse8I	GATNNNNATC	1 cut(s)	2046
BseAI	TCCGGA	1 cut(s)	575
BseBI	CCWGG	5 cut(s)	291, 1214, 1536, 1797, 1824
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	4 cut(s)	238, 1144, 1531, 1714
BseJI	GATNNNNATC	1 cut(s)	2046
BseLI	CCNNNNNNNGG	4 cut(s)	91, 185, 198, 1188
BseMI	GCAATG	2 cut(s)	1361, 2307
BseMII	CTCAG	7 cut(s)	59, 389, 527, 1334, 1860, 2280, 2697
BseNI	ACTGG	4 cut(s)	159, 1406, 1891, 2078
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	6 cut(s)	103, 1500, 1522, 1630, 2108, 2606
BseYI	CCCAGC	1 cut(s)	775
BsgI	GTGCAG	2 cut(s)	286, 2115
Bsh1236I	CGCG	5 cut(s)	914, 923, 953, 955, 2347
BshFI	GGCC	5 cut(s)	191, 1795, 2077, 2117, 2531
BsiHKAI	GWGCWC	5 cut(s)	135, 542, 1875, 2370, 2413
BsiHKCI	CYCGRG	2 cut(s)	128, 2460
BsiSI	CCGG	4 cut(s)	576, 986, 1182, 1256
BslFI	GGGAC	2 cut(s)	445, 2556
BslI	CCNNNNNNNGG	4 cut(s)	91, 185, 198, 1188
BsmAI	GTCTC	3 cut(s)	641, 1593, 1884
BsmFI	GGGAC	2 cut(s)	445, 2556
BsmI	GAATGC	1 cut(s)	2707
BsnI	GGCC	5 cut(s)	191, 1795, 2077, 2117, 2531
BsoBI	CYCGRG	2 cut(s)	128, 2460
Bsp1286I	GDGCHC	6 cut(s)	135, 240, 542, 1875, 2370, 2413
Bsp13I	TCCGGA	1 cut(s)	575
Bsp143I	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
Bsp68I	TCGCGA	1 cut(s)	923
BspANI	GGCC	5 cut(s)	191, 1795, 2077, 2117, 2531
BspCNI	CTCAG	7 cut(s)	60, 388, 526, 1333, 1859, 2281, 2698
BspEI	TCCGGA	1 cut(s)	575
BspFNI	CGCG	5 cut(s)	914, 923, 953, 955, 2347
BspLI	GGNNCC	5 cut(s)	19, 100, 190, 1254, 2310
BspMI	ACCTGC	1 cut(s)	505
BspOI	GCTAGC	2 cut(s)	149, 2207
BspPI	GGATC	3 cut(s)	1247, 1260, 1685
BspQI	GCTCTTC	2 cut(s)	530, 1715
BsrBI	CCGCTC	1 cut(s)	2459
BsrDI	GCAATG	2 cut(s)	1361, 2307
BsrI	ACTGG	4 cut(s)	159, 1406, 1891, 2078
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
BssNAI	GTATAC	1 cut(s)	393
BssNI	GRCGYC	4 cut(s)	737, 989, 1094, 2035
BssT1I	CCWWGG	1 cut(s)	111
Bst1107I	GTATAC	1 cut(s)	393
Bst2UI	CCWGG	5 cut(s)	291, 1214, 1536, 1797, 1824
Bst4CI	ACNGT	4 cut(s)	589, 1938, 2009, 2521
BstACI	GRCGYC	4 cut(s)	737, 989, 1094, 2035
BstAPI	GCANNNNNTGC	2 cut(s)	2102, 2702
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	6 cut(s)	147, 965, 2063, 2205, 2209, 2413
BstDEI	CTNAG	9 cut(s)	68, 375, 513, 1320, 1846, 2219, 2289, 2641, 2706
BstF5I	GGATG	4 cut(s)	238, 1144, 1531, 1714
BstFNI	CGCG	5 cut(s)	914, 923, 953, 955, 2347
BstHHI	GCGC	3 cut(s)	916, 955, 2347
BstKTI	GATC	9 cut(s)	474, 752, 886, 921, 1255, 1669, 1693, 1714, 2657
BstMAI	GTCTC	3 cut(s)	641, 1593, 1884
BstMBI	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
BstNI	CCWGG	5 cut(s)	291, 1214, 1536, 1797, 1824
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	5 cut(s)	289, 1212, 1534, 1795, 1822
BstSFI	CTRYAG	2 cut(s)	1432, 1934
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	5 cut(s)	914, 923, 953, 955, 2347
BstV1I	GCAGC	6 cut(s)	103, 1500, 1522, 1630, 2108, 2606
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	1252, 1666, 1690
BstYI	RGATCY	3 cut(s)	1252, 1666, 1690
BstZ17I	GTATAC	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	2035
BsuRI	GGCC	5 cut(s)	191, 1795, 2077, 2117, 2531
BtsCI	GGATG	4 cut(s)	238, 1144, 1531, 1714
BtsI	GCAGTG	2 cut(s)	540, 2532
BtsIMutI	CAGTG	6 cut(s)	65, 166, 540, 886, 2071, 2532
BtuMI	TCGCGA	1 cut(s)	923
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	6 cut(s)	147, 965, 2063, 2205, 2209, 2413
CaiI	CAGNNNCTG	2 cut(s)	1466, 2102
CfoI	GCGC	3 cut(s)	916, 955, 2347
Cfr13I	GGNCC	2 cut(s)	156, 189
CseI	GACGC	4 cut(s)	726, 791, 978, 1083
Csp6I	GTAC	3 cut(s)	1852, 2430, 2517
CviAII	CATG	8 cut(s)	396, 828, 1339, 1622, 1651, 1963, 2123, 2405
CviQI	GTAC	3 cut(s)	1852, 2430, 2517
DdeI	CTNAG	9 cut(s)	68, 375, 513, 1320, 1846, 2219, 2289, 2641, 2706
DpnI	GATC	9 cut(s)	473, 751, 885, 920, 1254, 1668, 1692, 1713, 2656
DpnII	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
DraI	TTTAAA	1 cut(s)	840
DraIII	CACNNNGTG	1 cut(s)	1901
EaeI	YGGCCR	2 cut(s)	2075, 2529
EciI	GGCGGA	2 cut(s)	1037, 1060
Ecl136II	GAGCTC	2 cut(s)	1873, 2368
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	2 cut(s)	1795, 2117
Eco24I	GRGCYC	2 cut(s)	1875, 2370
Eco32I	GATATC	1 cut(s)	1315
Eco47I	GGWCC	1 cut(s)	156
Eco53kI	GAGCTC	2 cut(s)	1873, 2368
Eco57I	CTGAAG	4 cut(s)	269, 1031, 1392, 2643
Eco72I	CACGTG	1 cut(s)	440
Eco88I	CYCGRG	2 cut(s)	128, 2460
EcoICRI	GAGCTC	2 cut(s)	1873, 2368
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	5 cut(s)	289, 1212, 1534, 1795, 1822
EcoRV	GATATC	1 cut(s)	1315
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	2 cut(s)	1476, 1882
EcoT38I	GRGCYC	2 cut(s)	1875, 2370
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	8 cut(s)	399, 831, 1342, 1625, 1654, 1966, 2126, 2408
FaqI	GGGAC	2 cut(s)	445, 2556
FatI	CATG	8 cut(s)	395, 827, 1338, 1621, 1650, 1962, 2122, 2404
FauI	CCCGC	4 cut(s)	364, 697, 778, 2216
FauNDI	CATATG	2 cut(s)	447, 1943
FbaI	TGATCA	1 cut(s)	1711
FblI	GTMKAC	2 cut(s)	392, 992
Fnu4HI	GCNGC	9 cut(s)	117, 956, 1511, 1514, 1619, 2059, 2097, 2457, 2595
FokI	GGATG	4 cut(s)	245, 1151, 1518, 1721
FriOI	GRGCYC	2 cut(s)	1875, 2370
Fsp4HI	GCNGC	9 cut(s)	117, 956, 1511, 1514, 1619, 2059, 2097, 2457, 2595
FspBI	CTAG	6 cut(s)	146, 834, 1637, 1770, 1791, 2204
GlaI	GCGC	3 cut(s)	915, 954, 2346
GluI	GCNGC	9 cut(s)	117, 956, 1511, 1514, 1619, 2059, 2097, 2457, 2595
GsaI	CCCAGC	1 cut(s)	779
GsuI	CTGGAG	3 cut(s)	1268, 1908, 2129
HaeIII	GGCC	5 cut(s)	191, 1795, 2077, 2117, 2531
HapII	CCGG	4 cut(s)	576, 986, 1182, 1256
HgaI	GACGC	4 cut(s)	726, 791, 978, 1083
HhaI	GCGC	3 cut(s)	916, 955, 2347
Hin1I	GRCGYC	4 cut(s)	737, 989, 1094, 2035
Hin1II	CATG	8 cut(s)	399, 831, 1342, 1625, 1654, 1966, 2126, 2408
Hin6I	GCGC	3 cut(s)	914, 953, 2345
HinP1I	GCGC	3 cut(s)	914, 953, 2345
HincII	GTYRAC	1 cut(s)	993
HindII	GTYRAC	1 cut(s)	993
HindIII	AAGCTT	4 cut(s)	168, 480, 1577, 1919
HpaII	CCGG	4 cut(s)	576, 986, 1182, 1256
HphI	GGTGA	4 cut(s)	560, 694, 1985, 2250
Hpy166II	GTNNAC	4 cut(s)	393, 443, 993, 2430
Hpy8I	GTNNAC	4 cut(s)	393, 443, 993, 2430
Hpy99I	CGWCG	8 cut(s)	342, 928, 935, 938, 976, 994, 997, 1099
HpyAV	CCTTC	7 cut(s)	189, 202, 258, 1063, 2107, 2247, 2299
HpyCH4III	ACNGT	4 cut(s)	589, 1938, 2009, 2521
HpyCH4IV	ACGT	4 cut(s)	439, 558, 698, 2035
HpyF3I	CTNAG	9 cut(s)	68, 375, 513, 1320, 1846, 2219, 2289, 2641, 2706
HpySE526I	ACGT	4 cut(s)	439, 558, 698, 2035
Hsp92I	GRCGYC	4 cut(s)	737, 989, 1094, 2035
Hsp92II	CATG	8 cut(s)	399, 831, 1342, 1625, 1654, 1966, 2126, 2408
HspAI	GCGC	3 cut(s)	914, 953, 2345
Kpn2I	TCCGGA	1 cut(s)	575
Ksp22I	TGATCA	1 cut(s)	1711
Kzo9I	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
LguI	GCTCTTC	2 cut(s)	530, 1715
LmnI	GCTCC	6 cut(s)	17, 104, 1423, 2308, 2365, 2602
Lsp1109I	GCAGC	6 cut(s)	103, 1500, 1522, 1630, 2108, 2606
LweI	GCATC	6 cut(s)	38, 1461, 1540, 2074, 2332, 2455
MaeI	CTAG	6 cut(s)	146, 834, 1637, 1770, 1791, 2204
MaeII	ACGT	4 cut(s)	439, 558, 698, 2035
MaeIII	GTNAC	4 cut(s)	398, 1407, 1901, 2256
MalI	GATC	9 cut(s)	473, 751, 885, 920, 1254, 1668, 1692, 1713, 2656
MbiI	CCGCTC	1 cut(s)	2459
MboI	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
MfeI	CAATTG	1 cut(s)	1715
MflI	RGATCY	3 cut(s)	1252, 1666, 1690
MhlI	GDGCHC	6 cut(s)	135, 240, 542, 1875, 2370, 2413
MlsI	TGGCCA	2 cut(s)	2077, 2531
MluNI	TGGCCA	2 cut(s)	2077, 2531
MlyI	GAGTC	3 cut(s)	643, 701, 2327
MmeI	TCCRAC	7 cut(s)	608, 684, 954, 1077, 1718, 1893, 2403
Mox20I	TGGCCA	2 cut(s)	2077, 2531
Mph1103I	ATGCAT	2 cut(s)	1476, 1882
MroI	TCCGGA	1 cut(s)	575
MroXI	GAANNNNTTC	3 cut(s)	279, 600, 794
MscI	TGGCCA	2 cut(s)	2077, 2531
MseI	TTAA	7 cut(s)	839, 1173, 1308, 1740, 1883, 2270, 2282
MslI	CAYNNNNRTG	3 cut(s)	1343, 1446, 1479
Msp20I	TGGCCA	2 cut(s)	2077, 2531
MspA1I	CMGCKG	2 cut(s)	1513, 2288
MspI	CCGG	4 cut(s)	576, 986, 1182, 1256
MspR9I	CCNGG	5 cut(s)	291, 1214, 1536, 1797, 1824
MunI	CAATTG	1 cut(s)	1715
Mva1269I	GAATGC	1 cut(s)	2707
MvaI	CCWGG	5 cut(s)	291, 1214, 1536, 1797, 1824
MvnI	CGCG	5 cut(s)	914, 923, 953, 955, 2347
NdeI	CATATG	2 cut(s)	447, 1943
NdeII	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
NheI	GCTAGC	2 cut(s)	145, 2203
NlaIII	CATG	8 cut(s)	399, 831, 1342, 1625, 1654, 1966, 2126, 2408
NlaIV	GGNNCC	5 cut(s)	19, 100, 190, 1254, 2310
NmuCI	GTSAC	4 cut(s)	398, 1407, 1901, 2256
NruI	TCGCGA	1 cut(s)	923
NsiI	ATGCAT	2 cut(s)	1476, 1882
NspI	RCATGY	1 cut(s)	399
PaeR7I	CTCGAG	2 cut(s)	128, 2460
PceI	AGGCCT	2 cut(s)	1795, 2117
PciI	ACATGT	1 cut(s)	395
PciSI	GCTCTTC	2 cut(s)	530, 1715
PcsI	WCGNNNNNNNCGW	2 cut(s)	927, 942
PctI	GAATGC	1 cut(s)	2707
PdmI	GAANNNNTTC	3 cut(s)	279, 600, 794
PfeI	GAWTC	7 cut(s)	280, 601, 1463, 1539, 2126, 2579, 2690
PfoI	TCCNGGA	1 cut(s)	1534
PkrI	GCNGC	9 cut(s)	118, 957, 1512, 1515, 1620, 2060, 2098, 2458, 2596
PleI	GAGTC	3 cut(s)	643, 701, 2326
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	3 cut(s)	643, 701, 2326
Ppu21I	YACGTR	1 cut(s)	440
PscI	ACATGT	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	1925
Psp124BI	GAGCTC	2 cut(s)	1875, 2370
Psp1406I	AACGTT	1 cut(s)	558
Psp6I	CCWGG	5 cut(s)	289, 1212, 1534, 1795, 1822
PspCI	CACGTG	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	775
PspGI	CCWGG	5 cut(s)	289, 1212, 1534, 1795, 1822
PspN4I	GGNNCC	5 cut(s)	19, 100, 190, 1254, 2310
PspPI	GGNCC	2 cut(s)	156, 189
PspXI	VCTCGAGB	1 cut(s)	128
PstNI	CAGNNNCTG	2 cut(s)	1466, 2102
PsuI	RGATCY	3 cut(s)	1252, 1666, 1690
PvuII	CAGCTG	2 cut(s)	1513, 2288
RruI	TCGCGA	1 cut(s)	923
RsaI	GTAC	3 cut(s)	1853, 2431, 2518
RsaNI	GTAC	3 cut(s)	1852, 2430, 2517
RseI	CAYNNNNRTG	3 cut(s)	1343, 1446, 1479
SacI	GAGCTC	2 cut(s)	1875, 2370
SalI	GTCGAC	1 cut(s)	991
SapI	GCTCTTC	2 cut(s)	530, 1715
SaqAI	TTAA	7 cut(s)	839, 1173, 1308, 1740, 1883, 2270, 2282
SatI	GCNGC	9 cut(s)	117, 956, 1511, 1514, 1619, 2059, 2097, 2457, 2595
Sau3AI	GATC	9 cut(s)	471, 749, 883, 918, 1252, 1666, 1690, 1711, 2654
Sau96I	GGNCC	2 cut(s)	156, 189
SchI	GAGTC	3 cut(s)	643, 701, 2327
ScrFI	CCNGG	5 cut(s)	291, 1214, 1536, 1797, 1824
SduI	GDGCHC	6 cut(s)	135, 240, 542, 1875, 2370, 2413
SfaNI	GCATC	6 cut(s)	38, 1461, 1540, 2074, 2332, 2455
SfcI	CTRYAG	2 cut(s)	1432, 1934
Sfr274I	CTCGAG	2 cut(s)	128, 2460
SgrDI	CGTCGACG	1 cut(s)	991
SinI	GGWCC	1 cut(s)	156
SlaI	CTCGAG	2 cut(s)	128, 2460
SmiMI	CAYNNNNRTG	3 cut(s)	1343, 1446, 1479
SmlI	CTYRAG	4 cut(s)	128, 219, 2051, 2460
SmoI	CTYRAG	4 cut(s)	128, 219, 2051, 2460
SpeI	ACTAGT	2 cut(s)	833, 1636
SseBI	AGGCCT	2 cut(s)	1795, 2117
SspMI	CTAG	6 cut(s)	146, 834, 1637, 1770, 1791, 2204
SstI	GAGCTC	2 cut(s)	1875, 2370
StuI	AGGCCT	2 cut(s)	1795, 2117
StyD4I	CCNGG	5 cut(s)	289, 1212, 1534, 1795, 1822
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	4 cut(s)	589, 1938, 2009, 2521
TaiI	ACGT	4 cut(s)	442, 561, 701, 2038
TaqI	TCGA	4 cut(s)	129, 992, 2189, 2461
TatI	WGTACW	1 cut(s)	2429
TauI	GCSGC	3 cut(s)	958, 2061, 2459
TfiI	GAWTC	7 cut(s)	280, 601, 1463, 1539, 2126, 2579, 2690
Tru1I	TTAA	7 cut(s)	839, 1173, 1308, 1740, 1883, 2270, 2282
Tru9I	TTAA	7 cut(s)	839, 1173, 1308, 1740, 1883, 2270, 2282
TscAI	CASTG	6 cut(s)	72, 166, 547, 886, 2078, 2539
TseFI	GTSAC	4 cut(s)	398, 1407, 1901, 2256
TseI	GCWGC	6 cut(s)	116, 1510, 1513, 1618, 2096, 2594
Tsp45I	GTSAC	4 cut(s)	398, 1407, 1901, 2256
TspGWI	ACGGA	4 cut(s)	430, 829, 1983, 2081
TspRI	CASTG	6 cut(s)	72, 166, 547, 886, 2078, 2539
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	4 cut(s)	487, 1732, 1803, 2540
XbaI	TCTAGA	1 cut(s)	1769
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	2 cut(s)	676, 1657
XhoI	CTCGAG	2 cut(s)	128, 2460
XmiI	GTMKAC	2 cut(s)	392, 992
XmnI	GAANNNNTTC	3 cut(s)	279, 600, 794
XspI	CTAG	6 cut(s)	146, 834, 1637, 1770, 1791, 2204
ZraI	GACGTC	1 cut(s)	2036
Zsp2I	ATGCAT	2 cut(s)	1476, 1882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.