Rh7CG175400

Domain of unknown function (DUF3527)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
14988360 .. 14994574
6215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG175400.1

Sequence Viewer

Length: 1407 bp
ATGGGGAACAGGAGGTTCGCGCAGATCGCGACGAGCGACGACGAAGAGGACGACTTCGCGCGGCAGAGCCAGCATTCGTCGGAGGAAGTTCCGGCGTCGACGAGGAAGAGGAAGCTGAAGAGAGTGGCGGAGGAGGAGGAGGAGGTGGAGAGGCGGGGGAGTAGGAAGAAGAAGAAGAAGAAGGGAGAGGAAGAGGCCGAAACGGCGTCGGAGGGAGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGATGAGCTGGAAGCCAAGCCGATTGGGGAGATGGTTAAGACTTCCGGCAAGGGGAGAACTCGGAGGCATCATTACCAGGCTTTTGAGTATGATGGAAACCAATACGAGCTGGAGGATCCGGTTCTTCTAACGCCCTCTGATAGAAGAGAGAAGCCTTATGTGGCAATTATTAAGGATATCACTCAGCTCAAAGATGGGAACATGGTGGTGTTAGGGCAATGGTTTTATCGTCCTGAAGAGGCAGAGAAAAAAGGGGGTGGAAACTGGCAGTCACAAGACACAAGGGAGCTGTTCTATAGTTTTCATCGTGATGAGTGTCCAGCAGAATCTGTGATGCATAAATGTGTGGTTCATTTTGTTCCTTTACACAAGCAGCTGCCAAAGCGTAAAGAGCATCCTGGATTTATTGTGCAAAAGGTGTATGACACCGATGGGAAGAAGCTTTGGAAGCTAACAGATAGAGACTATGAAGAAGATAAGCAGCATGAAATTGACTTACTAGTTCAGAAAACCATGCGAAGATTGGTAGATCTTCCTGATATTGAGATTGGAGATCCAACTACTAATCAGGATGATCAATTGAAGAGCAAAAGAAATTTGATTAAAAAGAATATAGCACCCCTTGATGTTTCTAGAGTGGAAGAAGCAACAACTAGGCCTGGTAAAAATCAAAAAGCTGAAACACCTGGAAGCTGTATGACTAATTCCTCAGAGTACCATCGTATTTTAGTTGAGCTCAATGCATTAACTGGAGACACACATCGTGACAAATGGTTGGAGAAGCTTATAAAAGAGCTACAGTTCATATGCAGTTCTACTGACAGCATGAACGGAGGTGATAAAAGAAAATGTGGTTCTGATGAAACTGACTGTAAGTCCCCAGATGTTGCAAATGGACGTCTGGATACAAATCTCAAGGGCGGCAAGCCTTTTCACTGGCCAGATGATGCTGTCCGTGCAGCTACTGCTCTGGAGAAGGCCTCACATGATTCCCTCTCCTCCGATTACCAGAAGTATAACCAAAAATTGCGGTCATTGTGCTACAATCTCTCGAAACAAGTGGTGCTAGCCCGCCGTCTGCTAAGTGGAGAGTTAGAGCCTTCAACTATACTAAATATGTCACCAGATGAGTTAAAGGTATGGTCTTTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

53.87

Weight (kDa)

5.48

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 118 - 235 2.2e-20 BAH domain
TFIIS_M PF07500 334 - 463 9e-14 Transcription factor S-II (TFIIS), central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
AatII GACGTC 1 cut(s) 1153
AccI GTMKAC 1 cut(s) 98
AccII CGCG 4 cut(s) 20, 29, 59, 61
AciI CCGC 6 cut(s) 61, 128, 154, 1173, 1282, 1324
AclWI GGATC 3 cut(s) 362, 375, 800
AcoI YGGCCR 1 cut(s) 1190
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 2 cut(s) 137, 507
AcyI GRCGYC 3 cut(s) 95, 206, 1150
AdeI CACNNNGTG 1 cut(s) 1016
AfaI GTAC 1 cut(s) 968
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 2 cut(s) 835, 1356
AhdI GACNNNNNGTC 1 cut(s) 1126
AhlI ACTAGT 1 cut(s) 751
AjnI CCWGG 4 cut(s) 327, 649, 910, 937
Alw21I GWGCWC 1 cut(s) 990
Alw26I GTCTC 2 cut(s) 708, 999
AlwI GGATC 3 cut(s) 362, 375, 800
AlwNI CAGNNNCTG 2 cut(s) 581, 1217
AoxI GGCC 4 cut(s) 195, 908, 1190, 1230
ApeKI GCWGC 4 cut(s) 625, 628, 733, 1211
ApoI RAATTY 1 cut(s) 847
AspLEI GCGC 2 cut(s) 22, 61
AsuHPI GGTGA 2 cut(s) 1100, 1365
AsuNHI GCTAGC 1 cut(s) 1318
BalI TGGCCA 1 cut(s) 1192
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 990
BbvI GCAGC 4 cut(s) 615, 637, 745, 1223
BccI CCATC 5 cut(s) 277, 338, 440, 677, 978
BceAI ACGGC 2 cut(s) 219, 1311
BciT130I CCWGG 4 cut(s) 329, 651, 912, 939
BciVI GTATCC 1 cut(s) 1150
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 2 cut(s) 708, 999
BcuI ACTAGT 1 cut(s) 751
BfaI CTAG 4 cut(s) 752, 885, 906, 1319
BfmI CTRYAG 2 cut(s) 547, 1049
BfuI GTATCC 1 cut(s) 1150
BglI GCCNNNNNGGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 781
BisI GCNGC 6 cut(s) 62, 626, 629, 734, 1174, 1212
BlsI GCNGC 6 cut(s) 63, 627, 630, 735, 1175, 1213
Bme1390I CCNGG 4 cut(s) 329, 651, 912, 939
BmeRI GACNNNNNGTC 1 cut(s) 1126
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 4 cut(s) 329, 651, 912, 939
BmsI GCATC 4 cut(s) 328, 576, 655, 1189
BmtI GCTAGC 1 cut(s) 1322
BplI GAGNNNNNCTC 2 cut(s) 1217, 1249
BpmI CTGGAG 3 cut(s) 383, 1023, 1244
BpuEI CTTGAG 1 cut(s) 1151
BsaBI GATNNNNATC 1 cut(s) 1161
BsaHI GRCGYC 3 cut(s) 95, 206, 1150
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 3 cut(s) 521, 1006, 1193
Bse3DI GCAATG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 1161
BseBI CCWGG 4 cut(s) 329, 651, 912, 939
BseGI GGATG 3 cut(s) 259, 646, 829
BseJI GATNNNNATC 1 cut(s) 1161
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 2 cut(s) 449, 975
BseNI ACTGG 3 cut(s) 521, 1006, 1193
BseXI GCAGC 4 cut(s) 615, 637, 745, 1223
BsgI GTGCAG 1 cut(s) 1230
Bsh1236I CGCG 4 cut(s) 20, 29, 59, 61
BshFI GGCC 4 cut(s) 197, 910, 1192, 1232
BsiHKAI GWGCWC 1 cut(s) 990
BsiSI CCGG 3 cut(s) 92, 297, 371
BslFI GGGAC 1 cut(s) 1114
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 708, 999
BsmFI GGGAC 1 cut(s) 1114
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 4 cut(s) 197, 910, 1192, 1232
Bsp1286I GDGCHC 1 cut(s) 990
Bsp143I GATC 5 cut(s) 24, 367, 781, 805, 826
Bsp68I TCGCGA 1 cut(s) 29
BspACI CCGC 6 cut(s) 61, 128, 154, 1173, 1282, 1324
BspANI GGCC 4 cut(s) 197, 910, 1192, 1232
BspCNI CTCAG 2 cut(s) 448, 974
BspFNI CGCG 4 cut(s) 20, 29, 59, 61
BspLI GGNNCC 1 cut(s) 369
BspOI GCTAGC 1 cut(s) 1322
BspPI GGATC 3 cut(s) 362, 375, 800
BspQI GCTCTTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 476
BsrI ACTGG 3 cut(s) 521, 1006, 1193
BssMI GATC 5 cut(s) 24, 367, 781, 805, 826
BssNI GRCGYC 3 cut(s) 95, 206, 1150
Bst2UI CCWGG 4 cut(s) 329, 651, 912, 939
Bst4CI ACNGT 2 cut(s) 1053, 1124
Bst6I CTCTTC 9 cut(s) 39, 101, 113, 186, 213, 225, 391, 483, 830
BstACI GRCGYC 3 cut(s) 95, 206, 1150
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstC8I GCNNGC 4 cut(s) 71, 1178, 1320, 1324
BstDEI CTNAG 3 cut(s) 435, 961, 1334
BstF5I GGATG 3 cut(s) 259, 646, 829
BstFNI CGCG 4 cut(s) 20, 29, 59, 61
BstHHI GCGC 2 cut(s) 22, 61
BstKTI GATC 5 cut(s) 27, 370, 784, 808, 829
BstMAI GTCTC 2 cut(s) 708, 999
BstMBI GATC 5 cut(s) 24, 367, 781, 805, 826
BstMWI GCNNNNNNNGC 8 cut(s) 26, 70, 203, 634, 643, 700, 1208, 1217
BstNI CCWGG 4 cut(s) 329, 651, 912, 939
BstSCI CCNGG 4 cut(s) 327, 649, 910, 937
BstSFI CTRYAG 2 cut(s) 547, 1049
BstUI CGCG 4 cut(s) 20, 29, 59, 61
BstV1I GCAGC 4 cut(s) 615, 637, 745, 1223
BstX2I RGATCY 3 cut(s) 367, 781, 805
BstYI RGATCY 3 cut(s) 367, 781, 805
BsuI GTATCC 1 cut(s) 1150
BsuRI GGCC 4 cut(s) 197, 910, 1192, 1232
BtsCI GGATG 3 cut(s) 259, 646, 829
BtsIMutI CAGTG 1 cut(s) 1186
BtuMI TCGCGA 1 cut(s) 29
Cac8I GCNNGC 4 cut(s) 71, 1178, 1320, 1324
CaiI CAGNNNCTG 2 cut(s) 581, 1217
CfoI GCGC 2 cut(s) 22, 61
CseI GACGC 2 cut(s) 84, 195
Csp6I GTAC 1 cut(s) 967
CviAII CATG 5 cut(s) 454, 737, 766, 1078, 1238
CviQI GTAC 1 cut(s) 967
DdeI CTNAG 3 cut(s) 435, 961, 1334
DpnI GATC 5 cut(s) 26, 369, 783, 807, 828
DpnII GATC 5 cut(s) 24, 367, 781, 805, 826
DraIII CACNNNGTG 1 cut(s) 1016
DriI GACNNNNNGTC 1 cut(s) 1126
EaeI YGGCCR 1 cut(s) 1190
Eam1104I CTCTTC 9 cut(s) 39, 101, 113, 186, 213, 225, 391, 483, 830
Eam1105I GACNNNNNGTC 1 cut(s) 1126
EarI CTCTTC 9 cut(s) 39, 101, 113, 186, 213, 225, 391, 483, 830
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 988
Eco147I AGGCCT 2 cut(s) 910, 1232
Eco24I GRGCYC 1 cut(s) 990
Eco32I GATATC 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 988
Eco57I CTGAAG 2 cut(s) 137, 507
EcoICRI GAGCTC 1 cut(s) 988
EcoRII CCWGG 4 cut(s) 327, 649, 910, 937
EcoRV GATATC 1 cut(s) 430
EcoT22I ATGCAT 2 cut(s) 591, 997
EcoT38I GRGCYC 1 cut(s) 990
FaeI CATG 5 cut(s) 457, 740, 769, 1081, 1241
FaqI GGGAC 1 cut(s) 1114
FatI CATG 5 cut(s) 453, 736, 765, 1077, 1237
FauI CCCGC 2 cut(s) 147, 1331
FauNDI CATATG 1 cut(s) 1058
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 6 cut(s) 62, 626, 629, 734, 1174, 1212
FokI GGATG 3 cut(s) 266, 633, 836
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 6 cut(s) 62, 626, 629, 734, 1174, 1212
FspBI CTAG 4 cut(s) 752, 885, 906, 1319
GlaI GCGC 2 cut(s) 21, 60
GluI GCNGC 6 cut(s) 62, 626, 629, 734, 1174, 1212
GsuI CTGGAG 3 cut(s) 383, 1023, 1244
HaeIII GGCC 4 cut(s) 197, 910, 1192, 1232
HapII CCGG 3 cut(s) 92, 297, 371
HgaI GACGC 2 cut(s) 84, 195
HhaI GCGC 2 cut(s) 22, 61
Hin1I GRCGYC 3 cut(s) 95, 206, 1150
Hin1II CATG 5 cut(s) 457, 740, 769, 1081, 1241
Hin6I GCGC 2 cut(s) 20, 59
HinP1I GCGC 2 cut(s) 20, 59
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 692, 1034
HinfI GANTC 2 cut(s) 578, 1241
HpaII CCGG 3 cut(s) 92, 297, 371
HphI GGTGA 2 cut(s) 1100, 1365
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 8 cut(s) 82, 211, 315, 391, 759, 964, 1111, 1255
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 7 cut(s) 34, 41, 44, 82, 100, 103, 211
HpyAV CCTTC 3 cut(s) 175, 1222, 1362
HpyCH4III ACNGT 2 cut(s) 1053, 1124
HpyCH4IV ACGT 1 cut(s) 1150
HpyCH4V TGCA 6 cut(s) 589, 664, 995, 1062, 1142, 1211
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 70, 203, 634, 643, 700, 1208, 1217
HpyF3I CTNAG 3 cut(s) 435, 961, 1334
HpySE526I ACGT 1 cut(s) 1150
Hsp92I GRCGYC 3 cut(s) 95, 206, 1150
Hsp92II CATG 5 cut(s) 457, 740, 769, 1081, 1241
HspAI GCGC 2 cut(s) 20, 59
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 24, 367, 781, 805, 826
LguI GCTCTTC 1 cut(s) 830
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 4 cut(s) 615, 637, 745, 1223
LweI GCATC 4 cut(s) 328, 576, 655, 1189
MaeI CTAG 4 cut(s) 752, 885, 906, 1319
MaeII ACGT 1 cut(s) 1150
MaeIII GTNAC 3 cut(s) 522, 1016, 1371
MalI GATC 5 cut(s) 26, 369, 783, 807, 828
MboI GATC 5 cut(s) 24, 367, 781, 805, 826
MfeI CAATTG 1 cut(s) 830
MflI RGATCY 3 cut(s) 367, 781, 805
MhlI GDGCHC 1 cut(s) 990
MlsI TGGCCA 1 cut(s) 1192
MluCI AATT 6 cut(s) 417, 741, 830, 847, 955, 1277
MluNI TGGCCA 1 cut(s) 1192
MmeI TCCRAC 4 cut(s) 60, 189, 833, 1008
Mox20I TGGCCA 1 cut(s) 1192
Mph1103I ATGCAT 2 cut(s) 591, 997
MscI TGGCCA 1 cut(s) 1192
MseI TTAA 5 cut(s) 288, 423, 855, 998, 1385
MslI CAYNNNNRTG 3 cut(s) 458, 561, 594
Msp20I TGGCCA 1 cut(s) 1192
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 3 cut(s) 92, 297, 371
MspR9I CCNGG 4 cut(s) 329, 651, 912, 939
MunI CAATTG 1 cut(s) 830
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 4 cut(s) 329, 651, 912, 939
MvnI CGCG 4 cut(s) 20, 29, 59, 61
MwoI GCNNNNNNNGC 8 cut(s) 26, 70, 203, 634, 643, 700, 1208, 1217
NdeI CATATG 1 cut(s) 1058
NdeII GATC 5 cut(s) 24, 367, 781, 805, 826
NheI GCTAGC 1 cut(s) 1318
NlaIII CATG 5 cut(s) 457, 740, 769, 1081, 1241
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 3 cut(s) 522, 1016, 1371
NruI TCGCGA 1 cut(s) 29
NsiI ATGCAT 2 cut(s) 591, 997
PceI AGGCCT 2 cut(s) 910, 1232
PciSI GCTCTTC 1 cut(s) 830
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 48
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 578, 1241
PfoI TCCNGGA 1 cut(s) 649
PkrI GCNGC 6 cut(s) 63, 627, 630, 735, 1175, 1213
PsiI TTATAA 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 990
Psp6I CCWGG 4 cut(s) 327, 649, 910, 937
PspGI CCWGG 4 cut(s) 327, 649, 910, 937
PspN4I GGNNCC 1 cut(s) 369
PstNI CAGNNNCTG 2 cut(s) 581, 1217
PsuI RGATCY 3 cut(s) 367, 781, 805
PvuII CAGCTG 1 cut(s) 628
RruI TCGCGA 1 cut(s) 29
RsaI GTAC 1 cut(s) 968
RsaNI GTAC 1 cut(s) 967
RseI CAYNNNNRTG 3 cut(s) 458, 561, 594
SacI GAGCTC 1 cut(s) 990
SalI GTCGAC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 830
SaqAI TTAA 5 cut(s) 288, 423, 855, 998, 1385
SatI GCNGC 6 cut(s) 62, 626, 629, 734, 1174, 1212
Sau3AI GATC 5 cut(s) 24, 367, 781, 805, 826
ScrFI CCNGG 4 cut(s) 329, 651, 912, 939
SduI GDGCHC 1 cut(s) 990
SfaNI GCATC 4 cut(s) 328, 576, 655, 1189
SfcI CTRYAG 2 cut(s) 547, 1049
SgrDI CGTCGACG 1 cut(s) 97
SmiMI CAYNNNNRTG 3 cut(s) 458, 561, 594
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SpeI ACTAGT 1 cut(s) 751
Sse9I AATT 6 cut(s) 417, 741, 830, 847, 955, 1277
SseBI AGGCCT 2 cut(s) 910, 1232
SsiI CCGC 6 cut(s) 61, 128, 154, 1173, 1282, 1324
SspMI CTAG 4 cut(s) 752, 885, 906, 1319
SstI GAGCTC 1 cut(s) 990
StuI AGGCCT 2 cut(s) 910, 1232
StyD4I CCNGG 4 cut(s) 327, 649, 910, 937
TaaI ACNGT 2 cut(s) 1053, 1124
TaiI ACGT 1 cut(s) 1153
TaqI TCGA 2 cut(s) 98, 1304
TasI AATT 6 cut(s) 417, 741, 830, 847, 955, 1277
TauI GCSGC 2 cut(s) 64, 1176
TfiI GAWTC 2 cut(s) 578, 1241
Tru1I TTAA 5 cut(s) 288, 423, 855, 998, 1385
Tru9I TTAA 5 cut(s) 288, 423, 855, 998, 1385
TscAI CASTG 1 cut(s) 1193
TseFI GTSAC 3 cut(s) 522, 1016, 1371
TseI GCWGC 4 cut(s) 625, 628, 733, 1211
Tsp45I GTSAC 3 cut(s) 522, 1016, 1371
TspDTI ATGAA 7 cut(s) 545, 593, 735, 753, 1045, 1094, 1128
TspGWI ACGGA 2 cut(s) 1098, 1196
TspRI CASTG 1 cut(s) 1193
XapI RAATTY 1 cut(s) 847
XbaI TCTAGA 1 cut(s) 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 4 cut(s) 752, 885, 906, 1319
ZraI GACGTC 1 cut(s) 1151
Zsp2I ATGCAT 2 cut(s) 591, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.