Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011558

Physical Location & Seq

Genomic Coordinates Forward (+)

33801617 .. 33802827

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37251.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGAAAGATCCGATTGTCCTTAAATACAAAGATGTTAGGCTGAGAGAAAGCGACTTGGATTTGCTAATAGGCCCACATTACTTGAACGATTGCATCATTCAATTCTATTTCAGCCATCTTTCTTCCGTTTGTAATAAGGACATCCTTCTGGTTTCACCTACAATCTCATTTTTTCTGGCAAATTCTCCGGATTCGGATACTTTTAGAGGCTTCGCGGAGTCTAACCAATTTGGTGAAAAGCAAGTTGTGATATTCACCGTGAATGATAGTCAAGACATGAGTGAATACGACGGCGGAAACCATTGGAGTTTGCTGGTGTATTACAGAAAATCGAATGCATTTGTGCATTACGACAGCTTGGGGGGTTTGAACAGCTTGGTTGCTAGGAAGTTTTACGGAGCAATTAAGAAACATGTGGCAGCTGCAGCAGCAAGACAAACACCAAAGTCGTCTGTGACTAGATCTACTATCGGTCGCATGTACTACTCTAAGCACCGGAGTCGTCGAGTCAGAAATTATCATCATCATAAGAACAAGAACAAGAAGAAGACTATATCGGGCGCGTTTGTTATGATGGGGCGCAGCTTGCTTAACAAGTTTTATCAATTAATTCAGTATCATCCTATGAAGAAGACCATATCGGGGGCTTGGAATAAGACGTCTTCTGCCCTGCAAAACTACTACTTGGTCAATAATAATAATGGGGATCATGATGAAGACATTAGTAGTACTAGTGATAAGGATCATGATGATGATAATGATCCTTGGTTTAGAGAAGAGAGTGCTATGCCTCAGCAGACAAATCTGTATGATTGCGGTTTATATGTCATGTTTGTTGCTAGAGTCATCTGTCAATGGTACTGCGTCGACCAGGAGGAACAGCAGCAGCAGCAGCAGCAGCAGCATTGCTCTCTCTTGGGGGACGAACGGTTTCCCAATATTATATCATACGTGAAGCGTCTCGATAACAATTTAGAAAACTCAATGCGCCCAGGATTTTTGAGCTTCATTCAAGGCTTGATTCATGATCAAACCCTAACATGTAACAGTATTCCATCTTCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 WRKY

Protein Analysis

357

Amino Acids

41.16

Weight (kDa)

8.06

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g37251 FvH4_6g48790
malus_domestica	MD00G1127100.v1.1
prunus_persica	Prupe.1G350400_v2.0.a1 Prupe.1G350400_v2.0.a1
pyrus_communis	pycom16g00110
rosa_chinensis	RchiOBHm_Chr4g0447061
rosa_laevigata	RLG00000005608 RLG00000021798
rosa_multiflora	Rmu_co8291115.1_g000001 Rmu_co8439157.1_g000001 Rmu_sc0014071.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082780 Rroxscaffold_5G00387380
rosa_rugosa	Rorug02G0534400
rosa_samantha	Rh2AG605300 Rh4BG448000 Rh4CG465100 Rh4DG446500
rosa_wichuraiana	Rw4G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	870
AccII	CGCG	2 cut(s)	218, 566
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	3 cut(s)	218, 297, 819
AclWI	GGATC	4 cut(s)	5, 717, 753, 758
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	662
AfaI	GTAC	3 cut(s)	485, 733, 863
AfiI	CCNNNNNNNGG	1 cut(s)	645
AflIII	ACRYGT	2 cut(s)	415, 1043
AgsI	TTSAA	4 cut(s)	88, 104, 373, 1016
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	2 cut(s)	873, 994
AluBI	AGCT	5 cut(s)	360, 378, 425, 588, 1008
AluI	AGCT	5 cut(s)	360, 378, 425, 588, 1008
Alw26I	GTCTC	1 cut(s)	968
AlwI	GGATC	4 cut(s)	5, 717, 753, 758
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	933
AspLEI	GCGC	3 cut(s)	566, 585, 993
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	150, 248, 250
BarI	GAAGNNNNNNTAC	1 cut(s)	1045
BbsI	GAAGAC	4 cut(s)	557, 641, 657, 726
BbvCI	CCTCAGC	1 cut(s)	795
BccI	CCATC	3 cut(s)	126, 571, 1066
BceAI	ACGGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciT130I	CCWGG	2 cut(s)	875, 996
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	1030
BcoDI	GTCTC	1 cut(s)	968
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	4 cut(s)	387, 462, 735, 843
BfmI	CTRYAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	464
BmcAI	AGTACT	1 cut(s)	733
Bme1390I	CCNGG	2 cut(s)	875, 996
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	875, 996
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	4 cut(s)	557, 641, 657, 726
Bpu10I	CCTNAGC	1 cut(s)	795
BsaAI	YACGTR	1 cut(s)	955
BsaBI	GATNNNNATC	2 cut(s)	744, 762
BsaHI	GRCGYC	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	767, 994
BsaWI	WCCGGW	2 cut(s)	190, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	907
Bse8I	GATNNNNATC	2 cut(s)	744, 762
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	875, 996
BseDI	CCNNGG	2 cut(s)	767, 994
BseGI	GGATG	2 cut(s)	144, 622
BseJI	GATNNNNATC	2 cut(s)	744, 762
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseMI	GCAATG	1 cut(s)	907
BseMII	CTCAG	2 cut(s)	35, 809
Bsh1236I	CGCG	2 cut(s)	218, 566
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	191, 499
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmAI	GTCTC	1 cut(s)	968
BsmBI	CGTCTC	1 cut(s)	968
BsmFI	GGGAC	1 cut(s)	938
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
BspACI	CCGC	3 cut(s)	218, 297, 819
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	36, 808
BspEI	TCCGGA	1 cut(s)	190
BspFNI	CGCG	2 cut(s)	218, 566
BspHI	TCATGA	3 cut(s)	712, 748, 1027
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	4 cut(s)	5, 717, 753, 758
BsrDI	GCAATG	1 cut(s)	907
BssECI	CCNNGG	2 cut(s)	767, 994
BssMI	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
BssNI	GRCGYC	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	875, 996
Bst4CI	ACNGT	3 cut(s)	262, 933, 1052
Bst6I	CTCTTC	1 cut(s)	774
BstACI	GRCGYC	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	955
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	44, 492, 795
BstF5I	GGATG	2 cut(s)	144, 622
BstFNI	CGCG	2 cut(s)	218, 566
BstHHI	GCGC	3 cut(s)	566, 585, 993
BstKTI	GATC	6 cut(s)	13, 467, 712, 748, 766, 1033
BstMAI	GTCTC	1 cut(s)	968
BstMBI	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	8 cut(s)	428, 431, 589, 892, 895, 898, 901, 904
BstNI	CCWGG	2 cut(s)	875, 996
BstNSI	RCATGY	3 cut(s)	419, 484, 1047
BstSCI	CCNGG	2 cut(s)	873, 994
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	2 cut(s)	218, 566
BstV2I	GAAGAC	4 cut(s)	557, 641, 657, 726
BstX2I	RGATCY	2 cut(s)	10, 464
BstYI	RGATCY	2 cut(s)	10, 464
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	144, 622
Cac8I	GCNNGC	1 cut(s)	590
CciI	TCATGA	3 cut(s)	712, 748, 1027
CfoI	GCGC	3 cut(s)	566, 585, 993
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	2 cut(s)	856, 950
Csp6I	GTAC	3 cut(s)	484, 732, 862
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	8 cut(s)	280, 416, 481, 713, 749, 832, 1028, 1044
CviQI	GTAC	3 cut(s)	484, 732, 862
DdeI	CTNAG	3 cut(s)	44, 492, 795
DpnI	GATC	6 cut(s)	12, 466, 711, 747, 765, 1032
DpnII	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
EciI	GGCGGA	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	873, 994
EcoT14I	CCWWGG	1 cut(s)	767
EcoT22I	ATGCAT	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	767
Esp3I	CGTCTC	1 cut(s)	968
FaeI	CATG	8 cut(s)	283, 419, 484, 716, 752, 835, 1031, 1047
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	8 cut(s)	279, 415, 480, 712, 748, 831, 1027, 1043
FbaI	TGATCA	1 cut(s)	1030
FblI	GTMKAC	1 cut(s)	870
FokI	GGATG	2 cut(s)	131, 609
FspBI	CTAG	4 cut(s)	387, 462, 735, 843
GlaI	GCGC	3 cut(s)	565, 584, 992
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	191, 499
HgaI	GACGC	2 cut(s)	856, 950
HhaI	GCGC	3 cut(s)	566, 585, 993
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	8 cut(s)	283, 419, 484, 716, 752, 835, 1031, 1047
Hin6I	GCGC	3 cut(s)	564, 583, 991
HinP1I	GCGC	3 cut(s)	564, 583, 991
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	6 cut(s)	194, 221, 502, 510, 846, 1024
HpaII	CCGG	2 cut(s)	191, 499
HphI	GGTGA	3 cut(s)	150, 248, 250
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	3 cut(s)	15, 199, 515
Hpy188III	TCNNGA	6 cut(s)	191, 275, 713, 749, 965, 1028
Hpy8I	GTNNAC	1 cut(s)	871
Hpy99I	CGWCG	3 cut(s)	296, 510, 872
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	262, 933, 1052
HpyCH4IV	ACGT	2 cut(s)	662, 954
HpyCH4V	TGCA	5 cut(s)	96, 341, 349, 428, 676
HpyF10VI	GCNNNNNNNGC	8 cut(s)	428, 431, 589, 892, 895, 898, 901, 904
HpyF3I	CTNAG	3 cut(s)	44, 492, 795
HpySE526I	ACGT	2 cut(s)	662, 954
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	8 cut(s)	283, 419, 484, 716, 752, 835, 1031, 1047
HspAI	GCGC	3 cut(s)	564, 583, 991
Kpn2I	TCCGGA	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	1030
Kzo9I	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
LmnI	GCTCC	1 cut(s)	401
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	4 cut(s)	387, 462, 735, 843
MaeII	ACGT	2 cut(s)	662, 954
MaeIII	GTNAC	2 cut(s)	457, 1046
MalI	GATC	6 cut(s)	12, 466, 711, 747, 765, 1032
MboI	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
MboII	GAAGA	9 cut(s)	117, 559, 562, 643, 646, 657, 731, 791, 1053
MflI	RGATCY	2 cut(s)	10, 464
MluCI	AATT	8 cut(s)	104, 184, 230, 405, 517, 608, 612, 973
MlyI	GAGTC	4 cut(s)	230, 511, 519, 855
MnlI	CCTC	3 cut(s)	203, 804, 871
Mph1103I	ATGCAT	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	4 cut(s)	24, 408, 594, 611
MslI	CAYNNNNRTG	1 cut(s)	753
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	191, 499
MspR9I	CCNGG	2 cut(s)	875, 996
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	875, 996
MvnI	CGCG	2 cut(s)	218, 566
MwoI	GCNNNNNNNGC	8 cut(s)	428, 431, 589, 892, 895, 898, 901, 904
NdeII	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
NlaIII	CATG	8 cut(s)	283, 419, 484, 716, 752, 835, 1031, 1047
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	3 cut(s)	419, 484, 1047
PagI	TCATGA	3 cut(s)	712, 748, 1027
PciI	ACATGT	2 cut(s)	415, 1043
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	2 cut(s)	194, 1024
PleI	GAGTC	4 cut(s)	229, 510, 518, 854
PpsI	GAGTC	4 cut(s)	229, 510, 518, 854
Ppu21I	YACGTR	1 cut(s)	955
PscI	ACATGT	2 cut(s)	415, 1043
PshBI	ATTAAT	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	873, 994
PspGI	CCWGG	2 cut(s)	873, 994
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	10, 464
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	3 cut(s)	485, 733, 863
RsaNI	GTAC	3 cut(s)	484, 732, 862
RseI	CAYNNNNRTG	1 cut(s)	753
SalI	GTCGAC	1 cut(s)	869
SaqAI	TTAA	4 cut(s)	24, 408, 594, 611
Sau3AI	GATC	6 cut(s)	10, 464, 709, 745, 763, 1030
Sau96I	GGNCC	1 cut(s)	74
ScaI	AGTACT	1 cut(s)	733
SchI	GAGTC	4 cut(s)	230, 511, 519, 855
ScrFI	CCNGG	2 cut(s)	875, 996
SetI	ASST	8 cut(s)	163, 362, 380, 427, 590, 665, 957, 1010
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	753
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	8 cut(s)	104, 184, 230, 405, 517, 608, 612, 973
SsiI	CCGC	3 cut(s)	218, 297, 819
SspI	AATATT	1 cut(s)	943
SspMI	CTAG	4 cut(s)	387, 462, 735, 843
StyD4I	CCNGG	2 cut(s)	873, 994
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	3 cut(s)	262, 933, 1052
TaiI	ACGT	2 cut(s)	665, 957
TaqI	TCGA	4 cut(s)	335, 508, 870, 966
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	8 cut(s)	104, 184, 230, 405, 517, 608, 612, 973
TatI	WGTACW	2 cut(s)	483, 731
TfiI	GAWTC	2 cut(s)	194, 1024
Tru1I	TTAA	4 cut(s)	24, 408, 594, 611
Tru9I	TTAA	4 cut(s)	24, 408, 594, 611
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	5 cut(s)	644, 732, 1000, 1016, 1053
TspGWI	ACGGA	2 cut(s)	118, 414
VspI	ATTAAT	1 cut(s)	611
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	3 cut(s)	419, 484, 1047
XmiI	GTMKAC	1 cut(s)	870
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	4 cut(s)	387, 462, 735, 843
ZraI	GACGTC	1 cut(s)	663
ZrmI	AGTACT	1 cut(s)	733
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.