Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011558

Physical Location & Seq

Genomic Coordinates Reverse (-)

36668529 .. 36669635

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATCCGAAGGTCCTTAGTTACAATGGTGTTGACCTGAGCATGAGCGACTTGGATCTTCTTAGAGGCCCTTGTTACTTAACCGATAGCATCATTCGATTCTATTTCACTCATCTTACTTCCCATTATGATGATGATATCCTTCTGGTTTCCCCTAATATCTCTGATCTTCTGGTAAATTCTCCGGATCCCGAGGATGAGCTTAGAGCCTTTGCGGAGTCTGACCAACTTGGTAAAAGGAAAGTTGTGATCTTCGCAGTGAATGATAACAAAGATCCGAGTCGAAGCGACGGCGGAAACCATTGGAGCTTGCTGGTGTATTTCAGAAAATCAAACGCATTCGTACATTACGACAGCTTGGGGGGTAACAATAGTTTGGAAGCTAGGAAAATGTATACAGTATTCAAGAAACTTGTGGCTGCTCCAGCAACACAAGCACCAATAACTCCAGCTGGGACTAGTAGTTTGGCTACCAACAACAGTTCTACAATGAGACACGAGTGCCACTCTACGCAGTCGCGGCGATTTATAGACTATACCAAGACAATGCTTGGGGTTTGGGGTTTTGTTGTCAACTACATTTTGTCAAAGTACTTGCGTCTGTTTGGAAATTATCATTATCATCCTTCGGAAGTGTGCTATCCCATGCAAAAAATCACCAATAGTAATCATGGAGATGATGATGATGTTAATGAACCTTGGTATAGAGAAGAGACTCTTATGCCTCAGCAGACGAATTTTTACGACTGCGGATTATATGTGATGGCAGTTGCTACAGTAGTCTGTGAATGGTACTACAACGAGAAGAGGGCGGAGCAGGAGCAGCAGCAGCATAAGGGCTTGTTTGGGGACGACCAGTTTCCGAATATCACCAACCATGTTGACAATTCTATTGAAAGAACAATGCGCTCTGAGCTTTTGCGGTTGATTCAACACCAGATCACACTTGAGGAGTACCGCAGTAGGCAGCCAAACAAAGTTAGGGAGTTTATACCTGAACAGCCGAAGAAGGAGACATTAACAGGAACAAACGCTTGTTCTCAGACAAAAAGAATTAGAACGGGAATAGAAGCTTCTCAAAATAAGAAATTTAGATTGAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 WRKY

Protein Analysis

369

Amino Acids

42.48

Weight (kDa)

6.32

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g37251 FvH4_6g48790
malus_domestica	MD00G1127100.v1.1
prunus_persica	Prupe.1G350400_v2.0.a1 Prupe.1G350400_v2.0.a1
pyrus_communis	pycom16g00110
rosa_chinensis	RchiOBHm_Chr4g0447061
rosa_laevigata	RLG00000005608 RLG00000021798
rosa_multiflora	Rmu_co8291115.1_g000001 Rmu_co8439157.1_g000001 Rmu_sc0014071.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082780 Rroxscaffold_5G00387380
rosa_rugosa	Rorug02G0534400
rosa_samantha	Rh2AG605300 Rh4BG448000 Rh4CG465100 Rh4DG446500
rosa_wichuraiana	Rw4G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	7 cut(s)	215, 294, 520, 750, 812, 922, 958
AclWI	GGATC	5 cut(s)	12, 63, 182, 195, 269
AcsI	RAATTY	3 cut(s)	178, 736, 1088
AfaI	GTAC	4 cut(s)	345, 593, 794, 956
AgsI	TTSAA	3 cut(s)	406, 896, 932
AhlI	ACTAGT	1 cut(s)	458
AluBI	AGCT	7 cut(s)	202, 309, 357, 383, 452, 916, 1073
AluI	AGCT	7 cut(s)	202, 309, 357, 383, 452, 916, 1073
Alw26I	GTCTC	3 cut(s)	487, 707, 1007
AlwI	GGATC	5 cut(s)	12, 63, 182, 195, 269
Ama87I	CYCGRG	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	5 cut(s)	419, 823, 826, 829, 967
ApoI	RAATTY	3 cut(s)	178, 736, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	2 cut(s)	13, 68
AsuHPI	GGTGA	2 cut(s)	649, 862
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	13
BamHI	GGATCC	2 cut(s)	4, 187
BauI	CACGAG	1 cut(s)	497
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	5 cut(s)	406, 835, 838, 841, 979
BccI	CCATC	1 cut(s)	757
BceAI	ACGGC	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	487, 707, 1007
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	2 cut(s)	384, 459
BfmI	CTRYAG	1 cut(s)	774
BisI	GCNGC	6 cut(s)	420, 521, 824, 827, 830, 968
BlsI	GCNGC	6 cut(s)	421, 522, 825, 828, 831, 969
BmcAI	AGTACT	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	13, 68
BmiI	GGNNCC	2 cut(s)	6, 189
BmsI	GCATC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	2 cut(s)	408, 432
Bpu10I	CCTNAGC	2 cut(s)	38, 726
BpuEI	CTTGAG	1 cut(s)	968
BsaJI	CCNNGG	2 cut(s)	192, 698
BsaWI	WCCGGW	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	856
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	192, 698
BseGI	GGATG	2 cut(s)	202, 622
BseMII	CTCAG	4 cut(s)	29, 740, 903, 1055
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	1 cut(s)	965
BseXI	GCAGC	5 cut(s)	406, 835, 838, 841, 979
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	469, 863
BsmAI	GTCTC	3 cut(s)	487, 707, 1007
BsmFI	GGGAC	2 cut(s)	469, 863
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	191
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
BspACI	CCGC	7 cut(s)	215, 294, 520, 750, 812, 922, 958
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	4 cut(s)	30, 739, 904, 1054
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	6, 189
BspPI	GGATC	5 cut(s)	12, 63, 182, 195, 269
BsrI	ACTGG	1 cut(s)	856
BssECI	CCNNGG	2 cut(s)	192, 698
BssMI	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
BssNAI	GTATAC	1 cut(s)	396
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	698
Bst1107I	GTATAC	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	3 cut(s)	400, 482, 778
Bst6I	CTCTTC	2 cut(s)	705, 800
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	7 cut(s)	17, 38, 62, 203, 726, 912, 1041
BstF5I	GGATG	2 cut(s)	202, 622
BstFNI	CGCG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	7 cut(s)	7, 58, 169, 190, 252, 277, 942
BstMAI	GTCTC	3 cut(s)	487, 707, 1007
BstMBI	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
BstMWI	GCNNNNNNNGC	6 cut(s)	425, 434, 520, 823, 829, 913
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	5 cut(s)	406, 835, 838, 841, 979
BstX2I	RGATCY	4 cut(s)	4, 55, 187, 274
BstYI	RGATCY	4 cut(s)	4, 55, 187, 274
BstZ17I	GTATAC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	202, 622
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	311
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	2 cut(s)	13, 68
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	4 cut(s)	344, 592, 793, 955
CviAII	CATG	4 cut(s)	43, 646, 671, 878
CviQI	GTAC	4 cut(s)	344, 592, 793, 955
DdeI	CTNAG	7 cut(s)	17, 38, 62, 203, 726, 912, 1041
DpnI	GATC	7 cut(s)	6, 57, 168, 189, 251, 276, 941
DpnII	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
Eam1104I	CTCTTC	2 cut(s)	705, 800
EarI	CTCTTC	2 cut(s)	705, 800
EciI	GGCGGA	2 cut(s)	309, 827
Eco130I	CCWWGG	1 cut(s)	698
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	13, 68
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	698
FaeI	CATG	4 cut(s)	46, 649, 674, 881
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FaqI	GGGAC	2 cut(s)	469, 863
FatI	CATG	4 cut(s)	42, 645, 670, 877
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	6 cut(s)	420, 521, 824, 827, 830, 968
FokI	GGATG	2 cut(s)	209, 609
Fsp4HI	GCNGC	6 cut(s)	420, 521, 824, 827, 830, 968
FspBI	CTAG	2 cut(s)	384, 459
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	6 cut(s)	420, 521, 824, 827, 830, 968
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	408, 432
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	4 cut(s)	46, 649, 674, 881
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	3 cut(s)	34, 574, 883
HindII	GTYRAC	3 cut(s)	34, 574, 883
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	5 cut(s)	99, 218, 280, 715, 928
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	649, 862
Hpy166II	GTNNAC	4 cut(s)	34, 396, 574, 883
Hpy188I	TCNGA	9 cut(s)	9, 166, 223, 279, 326, 631, 864, 913, 1044
Hpy188III	TCNNGA	3 cut(s)	185, 191, 406
Hpy8I	GTNNAC	4 cut(s)	34, 396, 574, 883
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	4 cut(s)	4, 152, 636, 1003
HpyCH4III	ACNGT	3 cut(s)	400, 482, 778
HpyCH4V	TGCA	1 cut(s)	649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	425, 434, 520, 823, 829, 913
HpyF3I	CTNAG	7 cut(s)	17, 38, 62, 203, 726, 912, 1041
Hsp92II	CATG	4 cut(s)	46, 649, 674, 881
HspAI	GCGC	1 cut(s)	907
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
LmnI	GCTCC	4 cut(s)	306, 427, 814, 820
Lsp1109I	GCAGC	5 cut(s)	406, 835, 838, 841, 979
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	384, 459
MaeIII	GTNAC	3 cut(s)	20, 74, 365
MalI	GATC	7 cut(s)	6, 57, 168, 189, 251, 276, 941
MboI	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
MboII	GAAGA	6 cut(s)	50, 161, 244, 722, 817, 1018
MflI	RGATCY	4 cut(s)	4, 55, 187, 274
MluCI	AATT	6 cut(s)	178, 610, 736, 886, 1053, 1088
MlyI	GAGTC	3 cut(s)	227, 289, 709
MnlI	CCTC	5 cut(s)	59, 187, 735, 801, 943
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	3 cut(s)	80, 690, 1019
MslI	CAYNNNNRTG	2 cut(s)	129, 675
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	338
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	6 cut(s)	425, 434, 520, 823, 829, 913
NdeII	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
NlaIII	CATG	4 cut(s)	46, 649, 674, 881
NlaIV	GGNNCC	2 cut(s)	6, 189
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	99, 928
PkrI	GCNGC	6 cut(s)	421, 522, 825, 828, 831, 969
PleI	GAGTC	3 cut(s)	226, 288, 709
PpsI	GAGTC	3 cut(s)	226, 288, 709
PpuMI	RGGWCCY	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	6, 189
PspPI	GGNCC	2 cut(s)	13, 68
PspPPI	RGGWCCY	1 cut(s)	13
PsuI	RGATCY	4 cut(s)	4, 55, 187, 274
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	4 cut(s)	345, 593, 794, 956
RsaNI	GTAC	4 cut(s)	344, 592, 793, 955
RseI	CAYNNNNRTG	2 cut(s)	129, 675
SaqAI	TTAA	3 cut(s)	80, 690, 1019
SatI	GCNGC	6 cut(s)	420, 521, 824, 827, 830, 968
Sau3AI	GATC	7 cut(s)	4, 55, 166, 187, 249, 274, 939
Sau96I	GGNCC	2 cut(s)	13, 68
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	3 cut(s)	227, 289, 709
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	129, 675
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	6 cut(s)	178, 610, 736, 886, 1053, 1088
SsiI	CCGC	7 cut(s)	215, 294, 520, 750, 812, 922, 958
SspMI	CTAG	2 cut(s)	384, 459
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	3 cut(s)	400, 482, 778
TaqI	TCGA	2 cut(s)	97, 283
TasI	AATT	6 cut(s)	178, 610, 736, 886, 1053, 1088
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	99, 928
Tru1I	TTAA	3 cut(s)	80, 690, 1019
Tru9I	TTAA	3 cut(s)	80, 690, 1019
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	5 cut(s)	419, 823, 826, 829, 967
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	3 cut(s)	178, 736, 1088
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	2 cut(s)	384, 459
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.