Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011558

Physical Location & Seq

Genomic Coordinates Reverse (-)

83323316 .. 83324278

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG605300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATGAGGAGGTCGTCACTTATAATGGTGTTGTGCTGAAAAGGAGCGACTTGGATCTGCTTAGCGGCCAGCACTACTTAAACGATTGCATTATTCAATTCTATTTCAGTTATCTTACTTCCCAATATGATGATCGCATCCTTCTGGTTTCCCCTACAATCTCTTTTTGGCTGGCAAATTCTCAGAAGTCCGAAGCTGATTTTAGAGACTTTGAGGAGTCTAACCAACCTAGTAAAAAGCAAGTTGTGATGTTCACCGTGAATGATAATGAAGACACGAGTCAAAGCGACGGTGGAAAGCATTGGAGCTTGCTTGCGTATTACAGAAAATCGAATGCCTTCGTGCATTATGACAGCTTTGGGGGTTTCAATAGTTTGGTTGCCAGGAAGTTGTATCGAGCGGTTAAGAACTGCGTGGCAGCTCCAGCAACACAAGCACCAACTCCAGCTGGGACTGGTAGTTTGGTTACCCACATTAGTTCTAAAATGGGACACAAAGTAATCTGTGAATGGGACTACGATGAGGAGAGGACGGAGCAGGAGCAGCAGAATTGCTTCTTGAAGGACGACTGGTTTCCGAATATCACGAAGCATCTTGACAATTCTTTAGAATACACGATGCGCTCTGAGATGTTGAGGTTCATTCAACACCACATCGAACTTAAAACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 WRKY

Protein Analysis

224

Amino Acids

25.94

Weight (kDa)

5.46

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g37251 FvH4_6g48790
malus_domestica	MD00G1127100.v1.1
prunus_persica	Prupe.1G350400_v2.0.a1 Prupe.1G350400_v2.0.a1
pyrus_communis	pycom16g00110
rosa_chinensis	RchiOBHm_Chr4g0447061
rosa_laevigata	RLG00000005608 RLG00000021798
rosa_multiflora	Rmu_co8291115.1_g000001 Rmu_co8439157.1_g000001 Rmu_sc0014071.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082780 Rroxscaffold_5G00387380
rosa_rugosa	Rorug02G0534400
rosa_samantha	Rh2AG605300 Rh4BG448000 Rh4CG465100 Rh4DG446500
rosa_wichuraiana	Rw4G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	401
AciI	CCGC	2 cut(s)	66, 401
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	178
AgsI	TTSAA	4 cut(s)	98, 370, 562, 647
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	5 cut(s)	197, 309, 357, 422, 449
AluI	AGCT	5 cut(s)	197, 309, 357, 422, 449
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	419, 544
ApoI	RAATTY	1 cut(s)	178
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
Asp700I	GAANNNNTTC	2 cut(s)	338, 554
AspLEI	GCGC	1 cut(s)	624
AsuHPI	GGTGA	1 cut(s)	247
BauI	CACGAG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	431, 556
BciT130I	CCWGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	3 cut(s)	67, 420, 545
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	3 cut(s)	68, 421, 546
Bme1390I	CCNGG	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	3 cut(s)	147, 601, 609
BoxI	GACNNNNGTC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	2 cut(s)	408, 429
Bpu1102I	GCTNAGC	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	460, 575
BseBI	CCWGG	1 cut(s)	385
BseGI	GGATG	2 cut(s)	10, 138
BseMII	CTCAG	2 cut(s)	197, 618
BseNI	ACTGG	2 cut(s)	460, 575
BseRI	GAGGAG	3 cut(s)	23, 230, 539
BseXI	GCAGC	2 cut(s)	431, 556
BseYI	CCCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	3 cut(s)	466, 504, 527
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	3 cut(s)	466, 504, 527
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	55, 133
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	66, 401
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	196, 619
BspPI	GGATC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	460, 575
BssMI	GATC	2 cut(s)	55, 133
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	259, 293
BstC8I	GCNNGC	4 cut(s)	71, 174, 311, 315
BstDEI	CTNAG	3 cut(s)	62, 183, 627
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	10, 138
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	2 cut(s)	58, 136
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	55, 133
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 434, 544
BstNI	CCWGG	1 cut(s)	385
BstPAI	GACNNNNGTC	1 cut(s)	279
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	431, 556
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	10, 138
Cac8I	GCNNGC	4 cut(s)	71, 174, 311, 315
CfoI	GCGC	1 cut(s)	624
CviJI	RGCY	7 cut(s)	69, 172, 197, 309, 357, 422, 449
CviKI_1	RGCY	7 cut(s)	69, 172, 197, 309, 357, 422, 449
DdeI	CTNAG	3 cut(s)	62, 183, 627
DpnI	GATC	2 cut(s)	57, 135
DpnII	GATC	2 cut(s)	55, 133
EaeI	YGGCCR	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	383
FaiI	YATR	3 cut(s)	24, 129, 351
FaqI	GGGAC	3 cut(s)	466, 504, 527
Fnu4HI	GCNGC	3 cut(s)	67, 420, 545
FokI	GGATG	2 cut(s)	17, 125
Fsp4HI	GCNGC	3 cut(s)	67, 420, 545
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	3 cut(s)	67, 420, 545
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	2 cut(s)	408, 429
HaeIII	GGCC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	624
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	2 cut(s)	218, 280
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	4 cut(s)	186, 193, 579, 628
Hpy188III	TCNNGA	3 cut(s)	559, 586, 596
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	152, 349, 556
HpyCH4III	ACNGT	2 cut(s)	259, 293
HpyCH4V	TGCA	2 cut(s)	90, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 434, 544
HpyF3I	CTNAG	3 cut(s)	62, 183, 627
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	55, 133
LmnI	GCTCC	5 cut(s)	45, 306, 427, 535, 541
Lsp1109I	GCAGC	2 cut(s)	431, 556
LweI	GCATC	3 cut(s)	147, 601, 609
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	16, 466
MalI	GATC	2 cut(s)	57, 135
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	2 cut(s)	55, 133
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	4 cut(s)	98, 178, 550, 601
MlyI	GAGTC	2 cut(s)	227, 289
MnlI	CCTC	5 cut(s)	4, 208, 517, 522, 630
MroXI	GAANNNNTTC	2 cut(s)	338, 554
MseI	TTAA	3 cut(s)	80, 405, 663
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	425, 434, 544
NdeII	GATC	2 cut(s)	55, 133
NmuCI	GTSAC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	2 cut(s)	338, 554
PkrI	GCNGC	3 cut(s)	68, 421, 546
PleI	GAGTC	2 cut(s)	226, 288
PpsI	GAGTC	2 cut(s)	226, 288
PshAI	GACNNNNGTC	1 cut(s)	279
PsiI	TTATAA	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	383
PspEI	GGTNACC	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	80, 405, 663
SatI	GCNGC	3 cut(s)	67, 420, 545
Sau3AI	GATC	2 cut(s)	55, 133
SchI	GAGTC	2 cut(s)	227, 289
ScrFI	CCNGG	1 cut(s)	385
SetI	ASST	8 cut(s)	15, 199, 232, 311, 359, 424, 451, 641
SfaNI	GCATC	3 cut(s)	147, 601, 609
Sse9I	AATT	4 cut(s)	98, 178, 550, 601
SsiI	CCGC	2 cut(s)	66, 401
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	259, 293
TaqI	TCGA	3 cut(s)	332, 397, 657
TasI	AATT	4 cut(s)	98, 178, 550, 601
TauI	GCSGC	1 cut(s)	69
Tru1I	TTAA	3 cut(s)	80, 405, 663
Tru9I	TTAA	3 cut(s)	80, 405, 663
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	419, 544
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	285, 631
TspGWI	ACGGA	1 cut(s)	548
XapI	RAATTY	1 cut(s)	178
XmnI	GAANNNNTTC	2 cut(s)	338, 554
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.