Rorug02G0534400
WRKY Family

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
66350079 .. 66355100
5022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0534400.1

Sequence Viewer

Length: 306 bp
ATGTGCAGAGGTGTAGAAGAAGAGGTCATTTCAGTTAAAGCCTCAAAAGGGTTTGTTTGCTGCGAGCTTTGCAGTTCAAGAGCTTCATTATATTGCCTAGCAGATGATGCATATTTGTGTAGGAAATGCGACCAATCTGTTCACGGGGCTAATTGTTTGGCTCTCCGGCATGTTAGATGCTTGCTCTGCAAGACATGTCAGAATCTTACACAGAGATATGTGATCGGGATTTCGGTCGAGCTTCTGCTGAGAGGAACAAGGCCATCACATCCACCATCCAACTGGAACTCATGTGAGATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

8.28

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 1 cut(s) 78
AluBI AGCT 3 cut(s) 67, 83, 241
AluI AGCT 3 cut(s) 67, 83, 241
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 47
BccI CCATC 2 cut(s) 271, 283
BfaI CTAG 1 cut(s) 98
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmsI GCATC 2 cut(s) 97, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 268, 275
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 48
BsnI GGCC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 222
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 287
BssMI GATC 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 65, 182
BstDEI CTNAG 1 cut(s) 248
BstF5I GGATG 2 cut(s) 268, 275
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 3 cut(s) 69, 107, 186
BstNSI RCATGY 2 cut(s) 173, 198
BstV1I GCAGC 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 268, 275
Cac8I GCNNGC 2 cut(s) 65, 182
CviAII CATG 3 cut(s) 170, 195, 291
CviJI RGCY 7 cut(s) 41, 67, 83, 149, 161, 241, 262
CviKI_1 RGCY 7 cut(s) 41, 67, 83, 149, 161, 241, 262
DdeI CTNAG 1 cut(s) 248
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 112
FaeI CATG 3 cut(s) 173, 198, 294
FaiI YATR 6 cut(s) 91, 112, 171, 196, 219, 292
FatI CATG 3 cut(s) 169, 194, 290
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 255, 262
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 166
Hin1II CATG 3 cut(s) 173, 198, 294
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 78, 226
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4V TGCA 4 cut(s) 6, 72, 110, 189
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 107, 186
HpyF3I CTNAG 1 cut(s) 248
Hsp92II CATG 3 cut(s) 173, 198, 294
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 2 cut(s) 179, 268
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 97, 167
MaeI CTAG 1 cut(s) 98
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 2 cut(s) 29, 32
MluCI AATT 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 3 cut(s) 16, 52, 245
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 115
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 3 cut(s) 69, 107, 186
NdeII GATC 1 cut(s) 222
NlaIII CATG 3 cut(s) 173, 198, 294
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 2 cut(s) 173, 198
PciI ACATGT 1 cut(s) 194
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 62
PscI ACATGT 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 222
SetI ASST 5 cut(s) 13, 27, 69, 85, 243
SfaNI GCATC 2 cut(s) 97, 167
SmiMI CAYNNNNRTG 1 cut(s) 115
Sse9I AATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 98
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 223
TasI AATT 1 cut(s) 151
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 75
XceI RCATGY 2 cut(s) 173, 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XspI CTAG 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.