RLG00000021308

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000687
Physical Location & Seq
Reverse (-)
74031146 .. 74031735
590 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021308

Sequence Viewer

Length: 378 bp
ATGGAAACGTTTTTAGCCGAACCCATCAAGCCTTTCTTTTCTACGAACTTTCCAAACTTATCGGAGGCTAGAATCGACCTCTCGTATAGACCTGGGGGGTCTGCTGGTCCCTTTCCATGGAATTTCTCTTATCTGAAAAAGTGTCTTGAAAATTTTAATTGCTCTAGAAAAGTAATTCTATATGTTACCCTCCCGGAGCTATGTACTTTTCCAGAATGGATAAGAAACGGATACACCCCACCATTGCCTAGTCTCAAGCATCTTGATGTAGAGATCGGTACTTCTACAACTGAAGTGACACATTCTGCCTTAATGGACTCCTTGAATTGGATGGCACCAGCGTCTCGAGTTTTGATCCATAACACAACATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

126

Amino Acids

14.16

Weight (kDa)

6.27

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AclI AACGTT 1 cut(s) 8
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 2 cut(s) 121, 151
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 205, 280
AfiI CCNNNNNNNGG 2 cut(s) 117, 327
AgsI TTSAA 2 cut(s) 149, 325
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 257, 348
AlwI GGATC 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 345
ApoI RAATTY 2 cut(s) 121, 151
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 345
AvaII GGWCC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 334
BccI CCATC 2 cut(s) 32, 325
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 257, 348
BfaI CTAG 3 cut(s) 69, 165, 249
BfuI GTATCC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 93, 194
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 109, 336
BmrFI CCNGG 2 cut(s) 93, 194
BmsI GCATC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 92, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 327
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 92, 116
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 117, 327
BseMI GCAATG 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 117, 327
BsmAI GTCTC 2 cut(s) 257, 348
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 345
Bsp143I GATC 2 cut(s) 273, 354
Bsp19I CCATGG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 109, 336
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 92, 116
BssMI GATC 2 cut(s) 273, 354
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 2 cut(s) 276, 357
BstMAI GTCTC 2 cut(s) 257, 348
BstMBI GATC 2 cut(s) 273, 354
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 91, 192
BsuI GTATCC 1 cut(s) 224
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 330
Csp6I GTAC 2 cut(s) 204, 279
CviAII CATG 1 cut(s) 117
CviJI RGCY 4 cut(s) 17, 31, 68, 199
CviKI_1 RGCY 4 cut(s) 17, 31, 68, 199
CviQI GTAC 2 cut(s) 204, 279
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 275, 356
DpnII GATC 2 cut(s) 273, 354
Eco130I CCWWGG 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 1 cut(s) 120
FaiI YATR 6 cut(s) 87, 118, 181, 183, 202, 360
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 116
FokI GGATG 1 cut(s) 343
FspBI CTAG 3 cut(s) 69, 165, 249
HapII CCGG 1 cut(s) 194
HgaI GACGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 120
HinfI GANTC 2 cut(s) 72, 317
HpaII CCGG 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 64, 135
Hpy188III TCNNGA 5 cut(s) 146, 165, 212, 263, 345
HpyCH4IV ACGT 1 cut(s) 8
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 120
Kzo9I GATC 2 cut(s) 273, 354
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 6 cut(s) 78, 90, 105, 207, 225, 351
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 69, 165, 249
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 184, 295
MalI GATC 2 cut(s) 275, 356
MboI GATC 2 cut(s) 273, 354
MluCI AATT 5 cut(s) 121, 151, 157, 174, 325
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 3 cut(s) 58, 89, 200
MseI TTAA 2 cut(s) 156, 311
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 93, 194
MvaI CCWGG 1 cut(s) 93
NciI CCSGG 1 cut(s) 194
NcoI CCATGG 1 cut(s) 116
NdeII GATC 2 cut(s) 273, 354
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 2 cut(s) 109, 336
NmuCI GTSAC 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 345
PfeI GAWTC 1 cut(s) 72
PfoI TCCNGGA 1 cut(s) 192
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 109, 336
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 2 cut(s) 205, 280
RsaNI GTAC 2 cut(s) 204, 279
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 2 cut(s) 156, 311
Sau3AI GATC 2 cut(s) 273, 354
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 93, 194
SetI ASST 4 cut(s) 11, 81, 94, 201
SfaNI GCATC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 254, 345
SmoI CTYRAG 2 cut(s) 254, 345
Sse9I AATT 5 cut(s) 121, 151, 157, 174, 325
SspMI CTAG 3 cut(s) 69, 165, 249
StyD4I CCNGG 2 cut(s) 91, 192
StyI CCWWGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 75, 346
TasI AATT 5 cut(s) 121, 151, 157, 174, 325
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 2 cut(s) 156, 311
Tru9I TTAA 2 cut(s) 156, 311
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 2 cut(s) 121, 151
XbaI TCTAGA 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 345
XspI CTAG 3 cut(s) 69, 165, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.