FvH4_6g38430

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000687
Physical Location & Seq
Forward (+)
30370975 .. 30372692
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38430.t1

Sequence Viewer

Length: 762 bp
ATGGGACTGATGGAGAATTATTATCATGAGTTGTCTTCAACCGGGGAGGATCCTGAGAATGATAAAGTAGCTCAGAAAGATTACAGAGAAGGTGATTCCTTTTCTTTTGAGCTCAACTATTTTGTTTTGAACAGTTCGATAAGCAATCTGCCATACTTATTGTCTGTGGTCTTCCATGAGATAGTCATGGCTGGTTTGCCTTCAAAGTTGAATCGAACTTTCTTGCAATCATGTTCCTATACGCAGAATGTGACCGTTACCATTATTATTAGGATGAATGTTGATCCAGAAAGGTCTCCGGTTCAGCGAGGAGAATTATTACCAGCAGCTGGATTCAGTATTGAGAATGTCGCGGAAGACTGTGATGACTATAAAGAGGAGGCAAAAAGCAATATTGAAAAGGGGGACAGCGCTCCAAATTTATGTGAGGCTACGATCATACTTGACAAGAGCACAAGATGGGATACATATCATATTACCCTCAGGGATTTCCTTGCAAATTTTGACTGCTCAGGAAAATTATCCATCTATGCTTTTGGTTCTGAGGATATCCTCTTTTCAGAAGATACGAGGCAGACCTGTTTTGCACCATTGCCTAGTCTCAAGCATTTGGACATGAAGATAATAGAGCGGAAAAGTTCCGCAATGGCAGTGACAAATTGTTACATGAGGGACTCGTTGAATTGGATGGCACCATCTCTGGAAATTCTATCTATAAACAAGATAAACAAGAAATGGAGTAAAAATTTCAACAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

254

Amino Acids

28.8

Weight (kDa)

4.91

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 691
AccB7I CCANNNNNTGG 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 631
AccII CGCG 1 cut(s) 353
AciI CCGC 3 cut(s) 353, 631, 642
AclWI GGATC 3 cut(s) 44, 57, 278
AcsI RAATTY 4 cut(s) 418, 499, 705, 745
AfeI AGCGCT 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 7 cut(s) 39, 130, 204, 211, 398, 682, 751
AluBI AGCT 3 cut(s) 71, 112, 329
AluI AGCT 3 cut(s) 71, 112, 329
Alw21I GWGCWC 2 cut(s) 114, 455
Alw26I GTCTC 2 cut(s) 300, 605
AlwI GGATC 3 cut(s) 44, 57, 278
AlwNI CAGNNNCTG 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 4 cut(s) 418, 499, 705, 745
AspLEI GCGC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 104
AxyI CCTNAGG 1 cut(s) 482
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 691
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 3 cut(s) 27, 163, 363
Bbv12I GWGCWC 2 cut(s) 114, 455
BbvI GCAGC 1 cut(s) 338
BccI CCATC 5 cut(s) 4, 453, 533, 682, 703
BciVI GTATCC 1 cut(s) 457
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 300, 605
BfaI CTAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 414
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 51, 693
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 3 cut(s) 27, 163, 363
Bpu10I CCTNAGC 1 cut(s) 511
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 482
Bse3DI GCAATG 2 cut(s) 590, 651
Bse8I GATNNNNATC 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 279, 693
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 2 cut(s) 590, 651
BseMII CTCAG 5 cut(s) 45, 86, 496, 525, 534
BseRI GAGGAG 2 cut(s) 324, 392
BseXI GCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 114, 455
BsiSI CCGG 2 cut(s) 42, 299
BslFI GGGAC 3 cut(s) 18, 419, 686
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 300, 605
BsmFI GGGAC 3 cut(s) 18, 419, 686
Bso31I GGTCTC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 114, 455
Bsp143I GATC 3 cut(s) 49, 283, 435
BspACI CCGC 3 cut(s) 353, 631, 642
BspCNI CTCAG 5 cut(s) 46, 85, 495, 524, 535
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 51, 693
BspPI GGATC 3 cut(s) 44, 57, 278
BspT107I GGYRCC 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 631
BsrDI GCAATG 2 cut(s) 590, 651
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 49, 283, 435
Bst4CI ACNGT 3 cut(s) 134, 256, 362
BstDEI CTNAG 5 cut(s) 54, 72, 482, 511, 543
BstF5I GGATG 2 cut(s) 279, 693
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 3 cut(s) 52, 286, 438
BstMAI GTCTC 2 cut(s) 300, 605
BstMBI GATC 3 cut(s) 49, 283, 435
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 338
BstV2I GAAGAC 3 cut(s) 27, 163, 363
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 482
BsuI GTATCC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 279, 693
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 657
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 413
CviAII CATG 6 cut(s) 26, 176, 187, 231, 616, 667
CviJI RGCY 5 cut(s) 71, 112, 191, 329, 431
CviKI_1 RGCY 5 cut(s) 71, 112, 191, 329, 431
DdeI CTNAG 5 cut(s) 54, 72, 482, 511, 543
DpnI GATC 3 cut(s) 51, 285, 437
DpnII GATC 3 cut(s) 49, 283, 435
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 300
Eco32I GATATC 1 cut(s) 550
Eco47III AGCGCT 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 6 cut(s) 29, 179, 190, 234, 619, 670
FaqI GGGAC 3 cut(s) 18, 419, 686
FatI CATG 6 cut(s) 25, 175, 186, 230, 615, 666
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 2 cut(s) 286, 700
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 412
GluI GCNGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 414
HapII CCGG 2 cut(s) 42, 299
HhaI GCGC 1 cut(s) 413
Hin1II CATG 6 cut(s) 29, 179, 190, 234, 619, 670
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HinfI GANTC 4 cut(s) 95, 211, 333, 674
HpaII CCGG 2 cut(s) 42, 299
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 3 cut(s) 75, 544, 562
Hpy188III TCNNGA 5 cut(s) 26, 53, 287, 513, 701
HpyAV CCTTC 2 cut(s) 83, 210
HpyCH4III ACNGT 3 cut(s) 134, 256, 362
HpyCH4V TGCA 3 cut(s) 226, 497, 587
HpyF3I CTNAG 5 cut(s) 54, 72, 482, 511, 543
Hsp92II CATG 6 cut(s) 29, 179, 190, 234, 619, 670
HspAI GCGC 1 cut(s) 411
Kzo9I GATC 3 cut(s) 49, 283, 435
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 1 cut(s) 338
MaeI CTAG 1 cut(s) 597
MaeIII GTNAC 4 cut(s) 250, 256, 652, 662
MalI GATC 3 cut(s) 51, 285, 437
MbiI CCGCTC 1 cut(s) 631
MboI GATC 3 cut(s) 49, 283, 435
MboII GAAGA 5 cut(s) 27, 163, 368, 575, 631
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 2 cut(s) 114, 455
MluCI AATT 9 cut(s) 16, 314, 418, 499, 518, 658, 682, 705, 745
MlyI GAGTC 1 cut(s) 668
MseI TTAA 1 cut(s) 760
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 2 cut(s) 42, 299
MspR9I CCNGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 353
NciI CCSGG 1 cut(s) 43
NdeII GATC 3 cut(s) 49, 283, 435
NlaIII CATG 6 cut(s) 29, 179, 190, 234, 619, 670
NlaIV GGNNCC 2 cut(s) 51, 693
NmuCI GTSAC 2 cut(s) 250, 652
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 3 cut(s) 95, 211, 333
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
Psp124BI GAGCTC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 51, 693
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 760
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 3 cut(s) 49, 283, 435
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 114, 455
SetI ASST 6 cut(s) 73, 94, 114, 296, 331, 581
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 9 cut(s) 16, 314, 418, 499, 518, 658, 682, 705, 745
SsiI CCGC 3 cut(s) 353, 631, 642
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 134, 256, 362
TaqI TCGA 2 cut(s) 137, 214
TasI AATT 9 cut(s) 16, 314, 418, 499, 518, 658, 682, 705, 745
TfiI GAWTC 3 cut(s) 95, 211, 333
Tru1I TTAA 1 cut(s) 760
Tru9I TTAA 1 cut(s) 760
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 2 cut(s) 250, 652
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 2 cut(s) 250, 652
TspDTI ATGAA 2 cut(s) 290, 632
TspRI CASTG 1 cut(s) 657
Van91I CCANNNNNTGG 1 cut(s) 329
XapI RAATTY 4 cut(s) 418, 499, 705, 745
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.