Rw4G030330

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000687
Physical Location & Seq
Forward (+)
57076701 .. 57079439
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030330.1

Sequence Viewer

Length: 888 bp
ATGGCCGATGCCAGCGAGTTACCGGAGATTGCAATCTGCCAAATCCTCCAATCGCTTTCCACTAAGTTTGTAGTCCGGGCCAGCATTCTTTCAAAGCAATGGGAACGTGTCTGGCCATTAGTCCCGTTATTAGATTTTGATGAGGAAGAGAATGTACACAATGGTCACAATGCCAGCCCTCGTCGACACAGAAAGTTCCTAGAGTTTGTAACACTGTGTTTGAGGCGTCGCGAAGAAGATAAGTTGTTACATAAATTCCGGCTTTGCATGGCGTACTGTTATTACTGTAAAGACTGTGGAGAGCTCGTGGATAAGTGTTTGAGTTTTGCTCTTGACAGAAATGTTAAAGAGTTGCATATTGCTGAATCAGGCTACTTCTTATCACATAAGGTTCTGAATGCTGAATATTTAACTGTTTTAAGTTTTTTGTATTTTATTGAAATAAGGGATGATGATATTGTAACTCTTCCGTCTTTGAAATATTTGTCTCTGATTTGTATAAGTTTTGGCGACTTGGGATTCCTCCACCTTATGGCGCTAGTTAAATGTAGAGGCTTCGATGAAAGAATTAAAGTTTCAAGTTCAAGCTTCAAATCCTTAGAAGTTTTCAACTCGGGTGTTGCACTCCAACTTGAAGCTATGAATCTAGAATCTTTTAGATTTGGTCAAAATGGTCATGCTTCCAACTATCAGTGCCTCAGTGAGTTTTTTCAGGAATGGTTTGTAGGTGCATGGTTTGAAAACTTGAGTTCAAAATTTCCACTCCTTGAGAGTTTGATCTTATATAAATGTGGCATCGAAAGGGGAGGAGATCTCAATGTGTTTAGCCACAACCAGAAACATTTTTGTAGTGGGTGGATGTGTCTGCAAAATGAATGTCGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

295

Amino Acids

34.18

Weight (kDa)

6.08

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 532
AccI GTMKAC 1 cut(s) 184
AccII CGCG 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 3, 113
AcsI RAATTY 2 cut(s) 254, 755
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 2 cut(s) 156, 275
AfiI CCNNNNNNNGG 1 cut(s) 532
AflIII ACRYGT 1 cut(s) 106
AluBI AGCT 3 cut(s) 304, 588, 638
AluI AGCT 3 cut(s) 304, 588, 638
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 3 cut(s) 3, 78, 113
ApoI RAATTY 2 cut(s) 254, 755
ArsI GACNNNNNNTTYG 1 cut(s) 862
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 613
BalI TGGCCA 1 cut(s) 115
BanII GRGCYC 1 cut(s) 306
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BauI CACGAG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 306
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 3 cut(s) 200, 539, 647
BfoI RGCGCY 1 cut(s) 539
BglII AGATCT 1 cut(s) 811
Bme1390I CCNGG 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 804
BplI GAGNNNNNCTC 4 cut(s) 313, 345, 798, 830
BpuEI CTTGAG 2 cut(s) 766, 788
BpuMI CCSGG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 32
BseGI GGATG 2 cut(s) 454, 864
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 712
BseRI GAGGAG 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 5, 80, 115
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 3 cut(s) 23, 76, 259
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 2 cut(s) 84, 403
BsnI GGCC 3 cut(s) 5, 80, 115
BsoBI CYCGRG 1 cut(s) 613
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 2 cut(s) 777, 811
Bsp68I TCGCGA 1 cut(s) 231
BspANI GGCC 3 cut(s) 5, 80, 115
BspCNI CTCAG 1 cut(s) 711
BspFNI CGCG 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 154
BssMI GATC 2 cut(s) 777, 811
BssNI GRCGYC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 5 cut(s) 216, 278, 287, 296, 415
Bst6I CTCTTC 2 cut(s) 141, 471
BstACI GRCGYC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 13, 82, 175
BstDEI CTNAG 3 cut(s) 63, 598, 698
BstF5I GGATG 2 cut(s) 454, 864
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 2 cut(s) 780, 814
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 2 cut(s) 777, 811
BstSCI CCNGG 1 cut(s) 75
BstUI CGCG 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 3 cut(s) 5, 80, 115
BtsCI GGATG 2 cut(s) 454, 864
BtsIMutI CAGTG 3 cut(s) 212, 698, 706
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 3 cut(s) 13, 82, 175
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 155, 274
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 3 cut(s) 268, 677, 732
CviQI GTAC 2 cut(s) 155, 274
DdeI CTNAG 3 cut(s) 63, 598, 698
DpnI GATC 2 cut(s) 779, 813
DpnII GATC 2 cut(s) 777, 811
EaeI YGGCCR 2 cut(s) 3, 113
Eam1104I CTCTTC 2 cut(s) 141, 471
EarI CTCTTC 2 cut(s) 141, 471
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 613
EcoICRI GAGCTC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 3 cut(s) 271, 680, 735
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 267, 676, 731
FblI GTMKAC 1 cut(s) 184
FokI GGATG 2 cut(s) 461, 871
FriOI GRGCYC 1 cut(s) 306
FspBI CTAG 3 cut(s) 200, 539, 647
GlaI GCGC 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 3 cut(s) 5, 80, 115
HapII CCGG 3 cut(s) 23, 76, 259
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 3 cut(s) 271, 680, 735
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 586
HinfI GANTC 4 cut(s) 365, 519, 643, 650
HpaII CCGG 3 cut(s) 23, 76, 259
Hpy166II GTNNAC 2 cut(s) 157, 185
Hpy188I TCNGA 2 cut(s) 396, 492
Hpy188III TCNNGA 4 cut(s) 230, 332, 647, 713
Hpy8I GTNNAC 2 cut(s) 157, 185
Hpy99I CGWCG 2 cut(s) 186, 231
HpyCH4III ACNGT 5 cut(s) 216, 278, 287, 296, 415
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 6 cut(s) 32, 267, 355, 623, 731, 868
HpyF3I CTNAG 3 cut(s) 63, 598, 698
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 3 cut(s) 271, 680, 735
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 2 cut(s) 777, 811
LweI GCATC 1 cut(s) 804
MaeI CTAG 3 cut(s) 200, 539, 647
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 5 cut(s) 18, 164, 208, 246, 460
MalI GATC 2 cut(s) 779, 813
MboI GATC 2 cut(s) 777, 811
MboII GAAGA 4 cut(s) 158, 245, 248, 458
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 3 cut(s) 254, 567, 755
MluNI TGGCCA 1 cut(s) 115
MmeI TCCRAC 2 cut(s) 652, 708
MnlI CCTC 8 cut(s) 56, 136, 189, 216, 533, 545, 707, 800
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 5 cut(s) 345, 410, 419, 543, 570
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 3 cut(s) 23, 76, 259
MspR9I CCNGG 1 cut(s) 77
Mva1269I GAATGC 2 cut(s) 84, 403
MvnI CGCG 1 cut(s) 231
NciI CCSGG 1 cut(s) 77
NdeII GATC 2 cut(s) 777, 811
NlaIII CATG 3 cut(s) 271, 680, 735
NmuCI GTSAC 1 cut(s) 164
NruI TCGCGA 1 cut(s) 231
PctI GAATGC 2 cut(s) 84, 403
PfeI GAWTC 4 cut(s) 365, 519, 643, 650
PflMI CCANNNNNTGG 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 811
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 2 cut(s) 156, 275
RsaNI GTAC 2 cut(s) 155, 274
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 183
SaqAI TTAA 5 cut(s) 345, 410, 419, 543, 570
Sau3AI GATC 2 cut(s) 777, 811
Sau96I GGNCC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 306
SetI ASST 7 cut(s) 109, 306, 393, 531, 590, 640, 730
SfaNI GCATC 1 cut(s) 804
SmlI CTYRAG 2 cut(s) 745, 767
SmoI CTYRAG 2 cut(s) 745, 767
Sse9I AATT 3 cut(s) 254, 567, 755
SspI AATATT 2 cut(s) 407, 482
SspMI CTAG 3 cut(s) 200, 539, 647
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 5 cut(s) 216, 278, 287, 296, 415
TaiI ACGT 1 cut(s) 109
TaqI TCGA 4 cut(s) 184, 558, 798, 880
TasI AATT 3 cut(s) 254, 567, 755
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 4 cut(s) 365, 519, 643, 650
Tru1I TTAA 5 cut(s) 345, 410, 419, 543, 570
Tru9I TTAA 5 cut(s) 345, 410, 419, 543, 570
TscAI CASTG 3 cut(s) 219, 698, 706
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 576, 656, 888
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 3 cut(s) 219, 698, 706
Van91I CCANNNNNTGG 1 cut(s) 532
XapI RAATTY 2 cut(s) 254, 755
XbaI TCTAGA 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 3 cut(s) 200, 539, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.