Rorug02G0493400

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000678
Physical Location & Seq
Forward (+)
62230594 .. 62235015
4422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0493400.1

Sequence Viewer

Length: 681 bp
ATGAATGGAAGCTATAGCAATGCAAGTGCGAGCTCAAGCTCGAGTTTGAATAGCAGCTCTCATGATACCGAGGATGACCTGACCATTGCAACTGTCTTGGCAGAAGAGGAAAAGCAGAAAAGTGATGGCAGGCTGGGGAAAAGACTCTCCCACTTAGATTCGATTCCGCACACTCCCAGGGTGAATGGGGAGATACCTGACGTGAATGATGCCACTCAAGACCATAAGAGGCTTTCAGAAAGGTTGGCTACCTATGATCTATCTGAGCTGCAAATTGAGGGTGATGGAAATTGCCAGTTTCGAGCAGTAGCTGATCAGTTGTTTCGCAATCCGGATTACCATAAGCATGTTAGAAAGCAGGTTATAAAGCAGTTAAAGCATCACAGAAAACTCTATGAAGCTTATGTCCCGATGAAGTACAAAAGTTACCTGAGGAAGATGAAAAAAAAAGGGGAATGGGGAGATCATCTGACCCTACAGGCAGCTGCTGACCGATTTGGAGCCAAAATTTGTTTAATCACCTCTTTTCGGGATACTTGCTACATTGAGATCCTTCCTAAAGACGGGAATCCTACCCGAGAGCTTTGGCTGAGCTTTTGGAGTGAAGTGCATTACAACTCACTATATGCTACTGCAGATGTTCCCACAAGAAGTCCCAGAAAGAAGCATTGGCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

226

Amino Acids

25.99

Weight (kDa)

8.83

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 94 - 184 5.8e-14 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 349
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 528, 563
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 176
AjuI GAANNNNNNNTTGG 1 cut(s) 652
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 1 cut(s) 544
AlwNI CAGNNNCTG 2 cut(s) 311, 488
Ama87I CYCGRG 2 cut(s) 40, 576
Aor13HI TCCGGA 1 cut(s) 331
ApeKI GCWGC 4 cut(s) 54, 268, 482, 485
ApoI RAATTY 1 cut(s) 507
AsuHPI GGTGA 3 cut(s) 193, 293, 511
AvaI CYCGRG 2 cut(s) 40, 576
AxyI CCTNAGG 1 cut(s) 431
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 4 cut(s) 66, 255, 472, 494
BccI CCATC 2 cut(s) 119, 278
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 1 cut(s) 526
BclI TGATCA 1 cut(s) 313
BfaI CTAG 1 cut(s) 679
BfmI CTRYAG 3 cut(s) 13, 476, 633
BfuAI ACCTGC 1 cut(s) 349
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 4 cut(s) 55, 269, 483, 486
BlpI GCTNAGC 1 cut(s) 590
BlsI GCNGC 4 cut(s) 56, 270, 484, 487
Bme1390I CCNGG 1 cut(s) 178
BmeT110I CYCGRG 2 cut(s) 40, 576
BmgBI CACGTC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 199, 388
Bpu1102I GCTNAGC 1 cut(s) 590
BpuEI CTTGAG 2 cut(s) 19, 201
BsaJI CCNNGG 3 cut(s) 69, 176, 177
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 2 cut(s) 528, 563
Bse1I ACTGG 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 431
Bse3DI GCAATG 2 cut(s) 25, 84
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 3 cut(s) 69, 176, 177
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 528, 563
BseMI GCAATG 2 cut(s) 25, 84
BseMII CTCAG 3 cut(s) 255, 422, 581
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 4 cut(s) 66, 255, 472, 494
BseYI CCCAGC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 2 cut(s) 40, 576
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 2 cut(s) 392, 639
BslI CCNNNNNNNGG 2 cut(s) 528, 563
BsmFI GGGAC 2 cut(s) 392, 639
BsoBI CYCGRG 2 cut(s) 40, 576
Bsp1286I GDGCHC 1 cut(s) 35
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 4 cut(s) 256, 313, 463, 549
Bsp1720I GCTNAGC 1 cut(s) 590
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 3 cut(s) 256, 423, 582
BspEI TCCGGA 1 cut(s) 331
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 502
BspMAI CTGCAG 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 25, 84
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 69, 176, 177
BssMI GATC 4 cut(s) 256, 313, 463, 549
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 31, 131
BstDEI CTNAG 4 cut(s) 154, 264, 431, 590
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 4 cut(s) 259, 316, 466, 552
BstMBI GATC 4 cut(s) 256, 313, 463, 549
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 3 cut(s) 13, 476, 633
BstV1I GCAGC 4 cut(s) 66, 255, 472, 494
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 431
BsuI GTATCC 1 cut(s) 526
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 31, 131
CaiI CAGNNNCTG 2 cut(s) 311, 488
CciI TCATGA 1 cut(s) 61
Csp6I GTAC 1 cut(s) 418
CviAII CATG 2 cut(s) 62, 347
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 4 cut(s) 154, 264, 431, 590
DpnI GATC 4 cut(s) 258, 315, 465, 551
DpnII GATC 4 cut(s) 256, 313, 463, 549
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 431
Eco88I CYCGRG 2 cut(s) 40, 576
EcoICRI GAGCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 2 cut(s) 65, 350
FaqI GGGAC 2 cut(s) 392, 639
FatI CATG 2 cut(s) 61, 346
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 55, 269, 483, 486
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 4 cut(s) 55, 269, 483, 486
FspBI CTAG 1 cut(s) 679
GluI GCNGC 4 cut(s) 55, 269, 483, 486
GsaI CCCAGC 1 cut(s) 137
HapII CCGG 1 cut(s) 332
Hin1II CATG 2 cut(s) 65, 350
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 4 cut(s) 144, 158, 163, 568
HpaII CCGG 1 cut(s) 332
HphI GGTGA 3 cut(s) 193, 293, 511
Hpy188I TCNGA 3 cut(s) 238, 265, 471
Hpy188III TCNNGA 5 cut(s) 62, 218, 332, 409, 530
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 23, 89, 271, 610, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 4 cut(s) 154, 264, 431, 590
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 65, 350
Kpn2I TCCGGA 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 4 cut(s) 256, 313, 463, 549
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 4 cut(s) 66, 255, 472, 494
LweI GCATC 2 cut(s) 199, 388
MaeI CTAG 1 cut(s) 679
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 425
MalI GATC 4 cut(s) 258, 315, 465, 551
MboI GATC 4 cut(s) 256, 313, 463, 549
MboII GAAGA 2 cut(s) 116, 448
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 3 cut(s) 273, 289, 507
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 6 cut(s) 64, 100, 222, 271, 426, 532
MroI TCCGGA 1 cut(s) 331
MseI TTAA 2 cut(s) 374, 515
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 4 cut(s) 256, 313, 463, 549
NlaIII CATG 2 cut(s) 65, 350
NlaIV GGNNCC 1 cut(s) 502
NspI RCATGY 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 61
PasI CCCWGGG 1 cut(s) 177
PfeI GAWTC 3 cut(s) 158, 163, 568
PkrI GCNGC 4 cut(s) 56, 270, 484, 487
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PsiI TTATAA 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 502
PspXI VCTCGAGB 1 cut(s) 40
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 2 cut(s) 311, 488
PsuI RGATCY 1 cut(s) 549
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 374, 515
SatI GCNGC 4 cut(s) 55, 269, 483, 486
Sau3AI GATC 4 cut(s) 256, 313, 463, 549
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 2 cut(s) 199, 388
SfcI CTRYAG 3 cut(s) 13, 476, 633
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 3 cut(s) 34, 40, 216
SmoI CTYRAG 3 cut(s) 34, 40, 216
Sse9I AATT 3 cut(s) 273, 289, 507
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 679
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 41, 161, 301
TaqII GACCGA 1 cut(s) 507
TasI AATT 3 cut(s) 273, 289, 507
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 3 cut(s) 158, 163, 568
Tru1I TTAA 2 cut(s) 374, 515
Tru9I TTAA 2 cut(s) 374, 515
TseI GCWGC 4 cut(s) 54, 268, 482, 485
TspDTI ATGAA 4 cut(s) 17, 411, 428, 455
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 40
XspI CTAG 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.