Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005144.1

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Reverse (-)

32936 .. 36490

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005144.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggcctacctcctctcaaaagattcaaacttatgcagcaaccaccaccgccaccaccttgatgatgtcattttgcctattcttcctgcgaagaagagaaaggagactagggaccagcccattctccctaacccaattcttgccaccttcgccgtcaccacctatttgttgtcggcgaagaagagggtgtgggcacttccacccgttttgttccctgagaagccagtttcggagctggatttgaatcttgagtacaagccggatctcggggaagagttagaggctggtggagaaactgctgacttggacaaattcactctcactttcttgttggttggccatgttattgggtcatgctggtacctccttggcatacagagggttaaccaatgtcttcgagatgcctgccataactctaatctgcagtcatgcgggagtttaatagattgttgcaatgctcaatctattccagagtcaactaaatggagagaaaatgaggaggctgctggttgttttaatccggaaggagatttctcctatggagtatatacttcagttgtcaatctcactacaagagatagcatgactaaatatttatactcactgttttggggattccagcaaatcagcactctggcaggaaatcaaactccaagctattttaatggagaattaattgtttgtaccatggtaattattggactgggactcttcttctttgctcttctaattggaaatatgcggaattttcttcggtctcttggacggagagctgtcataagcatggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

263

Amino Acids

29.52

Weight (kDa)

5.89

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	3 cut(s)	49, 432, 742
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	311, 745
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	3 cut(s)	254, 362, 685
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	27, 244
AluBI	AGCT	3 cut(s)	235, 657, 773
AluI	AGCT	3 cut(s)	235, 657, 773
Alw26I	GTCTC	2 cut(s)	98, 762
AlwI	GGATC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	2 cut(s)	3, 337
ApeKI	GCWGC	2 cut(s)	36, 503
ApoI	RAATTY	2 cut(s)	311, 745
AseI	ATTAAT	1 cut(s)	674
Asp718I	GGTACC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	48, 490
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BcoDI	GTCTC	2 cut(s)	98, 762
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	422
BisI	GCNGC	2 cut(s)	37, 504
BlsI	GCNGC	2 cut(s)	38, 505
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	113, 362
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	2 cut(s)	367, 687
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	224, 708
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	520
BseDI	CCNNGG	2 cut(s)	367, 687
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	224, 708
BseRI	GAGGAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	48, 490
BshFI	GGCC	2 cut(s)	5, 339
BshNI	GGYRCC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	260, 521
BslFI	GGGAC	2 cut(s)	125, 720
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	98, 762
BsmFI	GGGAC	2 cut(s)	125, 720
BsnI	GGCC	2 cut(s)	5, 339
Bso31I	GGTCTC	1 cut(s)	762
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	262
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	3 cut(s)	49, 432, 742
BspANI	GGCC	2 cut(s)	5, 339
BspCNI	CTCAG	1 cut(s)	208
BspEI	TCCGGA	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	113, 362
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	762
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	224, 708
BssECI	CCNNGG	2 cut(s)	367, 687
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	2 cut(s)	367, 687
Bst4CI	ACNGT	1 cut(s)	606
Bst6I	CTCTTC	5 cut(s)	89, 176, 267, 716, 729
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	687
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	2 cut(s)	98, 762
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	422
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	48, 490
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	5, 339
BtgI	CCRYGG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	253, 361, 684
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	6 cut(s)	341, 354, 429, 583, 688, 784
CviQI	GTAC	3 cut(s)	253, 361, 684
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	5 cut(s)	89, 176, 267, 716, 729
EarI	CTCTTC	5 cut(s)	89, 176, 267, 716, 729
Eco130I	CCWWGG	2 cut(s)	367, 687
Eco31I	GGTCTC	1 cut(s)	762
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	367, 687
ErhI	CCWWGG	2 cut(s)	367, 687
FaeI	CATG	6 cut(s)	344, 357, 432, 586, 691, 787
FaqI	GGGAC	2 cut(s)	125, 720
FatI	CATG	6 cut(s)	340, 353, 428, 582, 687, 783
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	2 cut(s)	37, 504
Fsp4HI	GCNGC	2 cut(s)	37, 504
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	2 cut(s)	37, 504
HaeIII	GGCC	2 cut(s)	5, 339
HapII	CCGG	2 cut(s)	260, 521
Hin1II	CATG	6 cut(s)	344, 357, 432, 586, 691, 787
HincII	GTYRAC	2 cut(s)	385, 477
HindII	GTYRAC	2 cut(s)	385, 477
HinfI	GANTC	5 cut(s)	23, 244, 473, 615, 708
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	260, 521
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	385, 477
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	248, 398, 470, 521
Hpy8I	GTNNAC	2 cut(s)	385, 477
HpyAV	CCTTC	2 cut(s)	157, 518
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4V	TGCA	3 cut(s)	36, 424, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	344, 357, 432, 586, 691, 787
Kpn2I	TCCGGA	1 cut(s)	520
KpnI	GGTACC	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	262
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	48, 490
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	7 cut(s)	135, 311, 671, 675, 693, 729, 745
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	482, 702
MnlI	CCTC	8 cut(s)	20, 23, 177, 274, 372, 374, 490, 493
Mox20I	TGGCCA	1 cut(s)	339
MroI	TCCGGA	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	5 cut(s)	384, 440, 516, 663, 674
MslI	CAYNNNNRTG	2 cut(s)	60, 782
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	2 cut(s)	260, 521
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	6 cut(s)	344, 357, 432, 586, 691, 787
NlaIV	GGNNCC	2 cut(s)	113, 362
NmuCI	GTSAC	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	23, 244, 615
PkrI	GCNGC	2 cut(s)	38, 505
PleI	GAGTC	2 cut(s)	481, 702
PpsI	GAGTC	2 cut(s)	481, 702
PshBI	ATTAAT	1 cut(s)	674
PspN4I	GGNNCC	2 cut(s)	113, 362
PspPI	GGNCC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	3 cut(s)	254, 362, 685
RsaNI	GTAC	3 cut(s)	253, 361, 684
RseI	CAYNNNNRTG	2 cut(s)	60, 782
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	5 cut(s)	384, 440, 516, 663, 674
SatI	GCNGC	2 cut(s)	37, 504
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	482, 702
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	8 cut(s)	12, 60, 149, 164, 237, 366, 659, 775
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	60, 782
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	7 cut(s)	135, 311, 671, 675, 693, 729, 745
SsiI	CCGC	3 cut(s)	49, 432, 742
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	367, 687
TaaI	ACNGT	1 cut(s)	606
TaqI	TCGA	1 cut(s)	397
TaqII	GACCGA	1 cut(s)	744
TasI	AATT	7 cut(s)	135, 311, 671, 675, 693, 729, 745
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	3 cut(s)	23, 244, 615
Tru1I	TTAA	5 cut(s)	384, 440, 516, 663, 674
Tru9I	TTAA	5 cut(s)	384, 440, 516, 663, 674
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	36, 503
Tsp45I	GTSAC	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	674
XapI	RAATTY	2 cut(s)	311, 745
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.