Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Reverse (-)

29999799 .. 30002174

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG278200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGTGGGACAAGAGCGCTTCCATGCTGTCACGTTGGCTTACTACTTAGGCGCGGTGGGCGCGCTTGTAGTGGGCTTCTTCCATGGATACTCAGTTCTCATGATTCTCAACCATGCATTCAGTGGCATTGCTGTGTCTATGGTAATGAAGTATGCTGACAATATTGTGAAGGAAAAGATAAGGGACGTTGGCATTAAAGATGAAGATCTTCTTTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

73

Amino Acids

8.06

Weight (kDa)

6.24

Isoelectric Point (pI)

10.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	24 - 58	1.1e-06	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 62
AciI	CCGC	1 cut(s)	53
AfeI	AGCGCT	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
Aor51HI	AGCGCT	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	4 cut(s)	18, 53, 62, 64
BciVI	GTATCC	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	205
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	105
BsePI	GCGCGC	1 cut(s)	60
Bsh1236I	CGCG	2 cut(s)	53, 62
BslFI	GGGAC	2 cut(s)	21, 197
BsmFI	GGGAC	2 cut(s)	21, 197
BsmI	GAATGC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	2 cut(s)	53, 62
BspHI	TCATGA	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	82
BssHII	GCGCGC	1 cut(s)	60
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	46, 91
BstDSI	CCRYGG	1 cut(s)	82
BstFNI	CGCG	2 cut(s)	53, 62
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	4 cut(s)	18, 53, 62, 64
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 59
BstUI	CGCG	2 cut(s)	53, 62
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	4 cut(s)	18, 53, 62, 64
CviAII	CATG	4 cut(s)	23, 83, 100, 113
CviJI	RGCY	2 cut(s)	38, 75
CviKI_1	RGCY	2 cut(s)	38, 75
DdeI	CTNAG	2 cut(s)	46, 91
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	82
Eco47III	AGCGCT	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	4 cut(s)	26, 86, 103, 116
FaiI	YATR	6 cut(s)	24, 84, 101, 114, 140, 153
FalI	AAGNNNNNCTT	1 cut(s)	195
FaqI	GGGAC	2 cut(s)	21, 197
FatI	CATG	4 cut(s)	22, 82, 99, 112
GlaI	GCGC	4 cut(s)	17, 52, 61, 63
HaeII	RGCGCY	1 cut(s)	19
HhaI	GCGC	4 cut(s)	18, 53, 62, 64
Hin1II	CATG	4 cut(s)	26, 86, 103, 116
Hin6I	GCGC	4 cut(s)	16, 51, 60, 62
HinP1I	GCGC	4 cut(s)	16, 51, 60, 62
HinfI	GANTC	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	32, 186
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 59
HpyF3I	CTNAG	2 cut(s)	46, 91
HpySE526I	ACGT	2 cut(s)	32, 186
Hsp92II	CATG	4 cut(s)	26, 86, 103, 116
HspAI	GCGC	4 cut(s)	16, 51, 60, 62
Kzo9I	GATC	1 cut(s)	205
MaeII	ACGT	2 cut(s)	32, 186
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	3 cut(s)	70, 200, 215
MflI	RGATCY	1 cut(s)	205
Mph1103I	ATGCAT	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	2 cut(s)	195, 220
MslI	CAYNNNNRTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	116
MvnI	CGCG	2 cut(s)	53, 62
MwoI	GCNNNNNNNGC	2 cut(s)	57, 59
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	4 cut(s)	26, 86, 103, 116
NmuCI	GTSAC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	118
PagI	TCATGA	1 cut(s)	99
PauI	GCGCGC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	205
PteI	GCGCGC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	195, 220
Sau3AI	GATC	1 cut(s)	205
SetI	ASST	2 cut(s)	35, 189
SgeI	CNNG	9 cut(s)	23, 35, 43, 64, 73, 77, 95, 112, 125
SmiMI	CAYNNNNRTG	1 cut(s)	131
SsiI	CCGC	1 cut(s)	53
SspI	AATATT	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	82
TaiI	ACGT	2 cut(s)	35, 189
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	195, 220
Tru9I	TTAA	2 cut(s)	195, 220
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	161, 216
TspRI	CASTG	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.