Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

55040036 .. 55042690

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0407100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGCTCAGGCGCTACTGCTTCCACCGCCGACCACTCCACGCGTCCCGAACCGGACTCCACTGGAAGCCCCGGGACGAGTACAAGCTGACCCGACCCGAATTGCTCGACCGGATCTCCCGCCTCCTCGTCCTCCAACGGTACGACGCCCTTAACAACCTCTCTTTTGAATTCTCCGACCAACTCCTCAACACCGTTCTCCGGAAACTGAAGCTAAACCCTAACGCCTGCTTAGAGTTTTTCAAATTGGCCTCGAAGCAACAGAAATTCAGGCCCAATCTCAAGTCCTACTGTATAATTGTTCATATTTTGTCTCGGGCTCGAATGTACGATCAAACCAGAGCCTATTTGAATGAATTGGTTGCTCTCTGTAAGAGTAATTATCCGGCTTTCGTGGTCTGGAATGAGCTTGTTAGGGTTTATAGGGAGTTTACATTTTCTCCCACGGTTTTCGATATGATTCTCAAGGTGTTTGCTGAACAAGGCATGACAAAGCATGCATTACATGTGTTTGATAATATGGGGAAGTGCGGTAGGATGCCGAGTTTGAGGTCTTGTAATTCTTTGTTGAGTAATTTAGTCAGGAGTGGTGAATGTCACACTGCATTGCTTGTTTATGAGCAGATAGTTAGGTTGGGGATTGTTCCGGATGTTTATACGTGTTCGATAGTGGTGAGAGCATATTGTAAAGAGGGGAGAGTGAGCAGAGCGGCGGAGTTTGTGAAAGAAATGGAGAGTTCGGGTTTTGAGTTGAATGTAGTGACTTACAATGGTTTGATTGATGGGTATGCTGGTTTGGGAGATGTTGGAGGAGCGAAATCGGTGTTGAGGTTGATGTCTGAAAGGGGAATTAAGAGAAATGTGGTGAGTTGTACACTGTTGATGAAGGCTTACTGCAAGCAAGGTAAGATGGAGGAAGCAGAGGAGGTGCTTCGCAATATAAAGGAGGAGGAGCCAGTGGTTGTGGATGAGCGTGCATATGGTGTGTTGGTAGATGGATATTGTAAAGCTGGCAGAATGGATGATGCTAGTAGGATACATGATGAGTTGTTGAGGATTGGTTTAAAAATGAATACTATCATTTGCAACTCCTTGATCAACGGGTATTGTAAGCTTGGTCAAGTTTGGGAAGCAGAGGGAGTATTGAAGCATATGAGATCATGGAACTTAAAGCCAGATTCTTATAGTTACAATACCCTGATGGATGGTTACTGTAGGAAAGGTCAGACGAGTGAAGCATTGAAGCTTTTCGATGAGATGCCTGAGGGAGGAATCCATCAAACTGTGGTAACTTATAATACCGTTCTCAAGGGTTTATGTCAAGCAAATGATTTTGATGATGCTTTACACCTTTGGCATTTAATGTTGAAAAGAGGGTTGGCTCCTGATGAGGTTAGCTACTGTTCTCTGCTTGATGGGTTTTTCAAGAAGGAAGATCTTGACGGCGCTATAACTCTGTGGAAAGATATTTTGGCAAAGGGTTTTACGAAAAGCCGGTTTGCTTTCAATACAATGATTAATGGGTTATGCAAGATGGGGAAATTGGTTGAAGCGGAGGAGATCTTCAATAAGATGAAGGAGCTAGGATATTTACCTGATGAGATAACTTATAGAACCCTGAGTGATGGGTACTGCAAAGTTGGGAATGTTGAAGAAGCTTTCAAAGTTAAAACTTTGATGGAAGGCCAGGCAATATTTCCTTCAATTGAAATGTACAATTCTCTCATCAGTGGTGTTTTTATGTGTAGAAATATAAGTAAAGTGATGAATCTTCTTGCTGAGATGCAGACAAGGGGACTATCCCCTAATACTGTAACATATGGAGCCCTTATCTCTGGTTGGTGCAATGAAGGGATGCTGGATAAAGCTTTTAGTTCATATTTTGAGATGATTGACAAAGGGTTTGACACCAATTTGTTTATTTGCAGCAAATTTATCAGTACTCTGTATAGGCTTGGAAGGATTGATGAAGCAAGTATTCTGTTGCAGAAGTTAATACATTATGATCCCTTTCCAGTTCAAAAAGGTGATATTACCCAACGCAAAATTCAAAAGTTTGCAGATTCTCTTGATGAAAGTGCTAAAAGTGTCTGTCTTCCCAACAATGTCTTATACAACATTGCTATCTTTGGAATCTGCAAATCAGGGAAGGTTGGTGATGCAAGAAGATTTTTATCAGCTTTGTTACTGAGTGGCTTTTCTCCAGACAATTTCACATATTGTACCCTGATTCATGCCACTGCTGCTGCTGGTAATGTGAACGAGGCTTTCAGCTTACGAGATGAAATGCTGAGAAGGAATCTTGTTCCTAACATTACCACATATAATGCTCTTATAAATGGCTTGTGCAAAGCAGGAGAATTGGATCGAGCGCAGAGGCTTTTCTATAAACTTTGCAAGAAGGGGTTAGCTCCTAATGCTGTTACCTATAATATCTTGATTGATGGATACTGCAGAACTGGCAATACTGTTGAAGCTTTTAAATTTAAAGACGAGATGATTCTAGAAGGGATTGTTCCCTCTATAATCACTTATTCTGCATTGATCAATGGTCTTTATAAGCAAGGAAATATGGAAGAATCTGTGAAGCTTTTGAGCCAAATGATCAAGGCTGGAGTGCAACAAAACCTAGTCAGTTATGTACTCCAGTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

884

Amino Acids

100.18

Weight (kDa)

8.7

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	181 - 229	3.5e-08	PPR repeat family
PPR_3	PF13812	205 - 262	7.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	212 - 244	5.7e-08	PPR repeat
TPR_24	PF23276	222 - 347	1e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	223 - 263	9.1e-10	PPR repeat family
PPR_2	PF13041	251 - 288	1e-05	PPR repeat family
PPR_3	PF13812	273 - 316	2.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	285 - 335	2.1e-09	PPR repeat family
PPR_1	PF12854	321 - 348	3.5e-06	PPR repeat
PPR_3	PF13812	344 - 403	8.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	353 - 385	6e-07	PPR repeat
PPR_2	PF13041	357 - 403	2.7e-14	PPR repeat family
PPR	PF01535	360 - 388	7.4e-07	PPR repeat
PPR_3	PF13812	380 - 436	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	388 - 419	5.9e-13	PPR repeat
PPR_2	PF13041	391 - 440	3.6e-18	PPR repeat family
PPR	PF01535	394 - 424	2.9e-10	PPR repeat
PPR_1	PF12854	423 - 454	1.6e-07	PPR repeat
PPR_2	PF13041	427 - 475	1e-15	PPR repeat family
PPR	PF01535	429 - 459	7.7e-07	PPR repeat
PPR_long	PF17177	475 - 623	5.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	497 - 525	2.2e-09	PPR repeat
PPR_2	PF13041	499 - 545	1.1e-15	PPR repeat family
PPR	PF01535	500 - 528	1.7e-09	PPR repeat
PPR_3	PF13812	520 - 576	7.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	528 - 560	1.8e-09	PPR repeat
PPR_3	PF13812	556 - 611	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	566 - 615	4.1e-11	PPR repeat family
PPR_1	PF12854	597 - 623	4.3e-09	PPR repeat
PPR_2	PF13041	601 - 638	7.6e-07	PPR repeat family
PPR	PF01535	604 - 634	5.6e-06	PPR repeat
PPR_2	PF13041	699 - 745	4.4e-09	PPR repeat family
PPR_long	PF17177	719 - 822	3.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	731 - 762	1.3e-07	PPR repeat
PPR_3	PF13812	731 - 779	2.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	741 - 783	3.2e-12	PPR repeat family
PPR_3	PF13812	758 - 816	9.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	765 - 794	1.3e-11	PPR repeat
PPR_2	PF13041	769 - 818	1.5e-18	PPR repeat family
PPR	PF01535	773 - 802	3.2e-07	PPR repeat
PPR_1	PF12854	800 - 832	2e-13	PPR repeat
PPR_2	PF13041	804 - 853	2.2e-16	PPR repeat family
PPR	PF01535	807 - 837	6.9e-08	PPR repeat
PPR_1	PF12854	836 - 867	3.6e-07	PPR repeat
PPR_2	PF13041	839 - 879	3.3e-08	PPR repeat family
PPR	PF01535	842 - 872	1.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1293, 2333, 2556
AccBSI	CCGCTC	1 cut(s)	707
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	2 cut(s)	198, 643
AciI	CCGC	6 cut(s)	25, 118, 528, 707, 710, 1550
AclWI	GGATC	3 cut(s)	119, 1997, 2370
AcsI	RAATTY	5 cut(s)	167, 263, 1928, 2043, 2480
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	9 cut(s)	80, 140, 326, 871, 1628, 1712, 1939, 2221, 2640
AfiI	CCNNNNNNNGG	2 cut(s)	198, 1265
AflIII	ACRYGT	3 cut(s)	39, 502, 656
AjnI	CCWGG	1 cut(s)	1683
AjuI	GAANNNNNNNTTGG	6 cut(s)	1358, 1390, 1451, 1483, 2028, 2060
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	3 cut(s)	119, 1997, 2370
Ama87I	CYCGRG	2 cut(s)	69, 312
Aor13HI	TCCGGA	2 cut(s)	198, 643
AoxI	GGCC	3 cut(s)	246, 269, 1681
ApeKI	GCWGC	3 cut(s)	1923, 2240, 2243
ApoI	RAATTY	5 cut(s)	167, 263, 1928, 2043, 2480
ArsI	GACNNNNNNTTYG	2 cut(s)	1883, 1915
AseI	ATTAAT	1 cut(s)	1515
Asp700I	GAANNNNTTC	1 cut(s)	1244
AspLEI	GCGC	3 cut(s)	12, 1445, 2371
AspS9I	GGNCC	1 cut(s)	270
AsuC2I	CCSGG	2 cut(s)	70, 71
AsuHPI	GGTGA	5 cut(s)	599, 682, 874, 2036, 2165
AvaI	CYCGRG	2 cut(s)	69, 312
AxyI	CCTNAGG	1 cut(s)	1260
BanII	GRGCYC	2 cut(s)	319, 1825
BbsI	GAAGAC	1 cut(s)	2084
BbvI	GCAGC	3 cut(s)	1935, 2227, 2230
BceAI	ACGGC	1 cut(s)	1456
BciT130I	CCWGG	1 cut(s)	1685
BciVI	GTATCC	2 cut(s)	1026, 2438
BclI	TGATCA	3 cut(s)	1092, 2541, 2601
BcnI	CCSGG	2 cut(s)	70, 71
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	4 cut(s)	1026, 1580, 2501, 2627
BfmI	CTRYAG	2 cut(s)	1210, 2449
BfoI	RGCGCY	2 cut(s)	13, 1446
BfuI	GTATCC	2 cut(s)	1026, 2438
BglII	AGATCT	2 cut(s)	1432, 1557
BisI	GCNGC	4 cut(s)	708, 1924, 2241, 2244
BlsI	GCNGC	4 cut(s)	709, 1925, 2242, 2245
BmcAI	AGTACT	1 cut(s)	1939
Bme1390I	CCNGG	3 cut(s)	70, 71, 1685
BmeT110I	CYCGRG	2 cut(s)	69, 312
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	3 cut(s)	951, 1380, 1822
BmrFI	CCNGG	3 cut(s)	70, 71, 1685
BmsI	GCATC	7 cut(s)	525, 1012, 1245, 1327, 1770, 1842, 2146
BpiI	GAAGAC	1 cut(s)	2084
BpmI	CTGGAG	3 cut(s)	2184, 2627, 2631
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	3 cut(s)	263, 446, 1289
BpuMI	CCSGG	2 cut(s)	70, 71
BsaAI	YACGTR	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	2170
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	68, 69, 441
BsaWI	WCCGGW	4 cut(s)	50, 108, 198, 643
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 421, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 1265
Bse118I	RCCGGY	1 cut(s)	1491
Bse1I	ACTGG	5 cut(s)	65, 953, 2012, 2461, 2644
Bse21I	CCTNAGG	1 cut(s)	1260
Bse3DI	GCAATG	3 cut(s)	602, 1849, 2115
Bse8I	GATNNNNATC	1 cut(s)	2170
BseAI	TCCGGA	2 cut(s)	198, 643
BseBI	CCWGG	1 cut(s)	1685
BseDI	CCNNGG	3 cut(s)	68, 69, 441
BseGI	GGATG	6 cut(s)	540, 652, 970, 1024, 1207, 1857
BseJI	GATNNNNATC	1 cut(s)	2170
BseLI	CCNNNNNNNGG	2 cut(s)	198, 1265
BseMI	GCAATG	3 cut(s)	602, 1849, 2115
BseMII	CTCAG	6 cut(s)	19, 1251, 1607, 1767, 2177, 2279
BseNI	ACTGG	5 cut(s)	65, 953, 2012, 2461, 2644
BseRI	GAGGAG	7 cut(s)	113, 173, 822, 935, 959, 962, 1568
BseXI	GCAGC	3 cut(s)	1935, 2227, 2230
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	248, 271, 1683
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	2 cut(s)	69, 312
BsiSI	CCGG	7 cut(s)	51, 70, 109, 199, 383, 644, 1492
BslFI	GGGAC	3 cut(s)	28, 86, 1806
BslI	CCNNNNNNNGG	2 cut(s)	198, 1265
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	3 cut(s)	28, 86, 1806
BsnI	GGCC	3 cut(s)	248, 271, 1683
BsoBI	CYCGRG	2 cut(s)	69, 312
Bsp1286I	GDGCHC	2 cut(s)	319, 1825
Bsp13I	TCCGGA	2 cut(s)	198, 643
Bsp1407I	TGTACA	2 cut(s)	869, 1710
BspACI	CCGC	6 cut(s)	25, 118, 528, 707, 710, 1550
BspANI	GGCC	3 cut(s)	248, 271, 1683
BspCNI	CTCAG	6 cut(s)	18, 1252, 1608, 1768, 2178, 2280
BspEI	TCCGGA	2 cut(s)	198, 643
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	3 cut(s)	951, 1380, 1822
BspMAI	CTGCAG	1 cut(s)	2453
BspPI	GGATC	3 cut(s)	119, 1997, 2370
BsrBI	CCGCTC	1 cut(s)	707
BsrDI	GCAATG	3 cut(s)	602, 1849, 2115
BsrFI	RCCGGY	1 cut(s)	1491
BsrGI	TGTACA	2 cut(s)	869, 1710
BsrI	ACTGG	5 cut(s)	65, 953, 2012, 2461, 2644
BssAI	RCCGGY	1 cut(s)	1491
BssECI	CCNNGG	3 cut(s)	68, 69, 441
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	1685
BstACI	GRCGYC	1 cut(s)	144
BstAUI	TGTACA	2 cut(s)	869, 1710
BstBAI	YACGTR	1 cut(s)	657
BstC8I	GCNNGC	5 cut(s)	226, 495, 896, 972, 1009
BstDEI	CTNAG	7 cut(s)	5, 229, 1260, 1616, 1776, 2186, 2288
BstDSI	CCRYGG	1 cut(s)	441
BstENI	CCTNNNNNAGG	1 cut(s)	1263
BstF5I	GGATG	6 cut(s)	540, 652, 970, 1024, 1207, 1857
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	13, 1446
BstHHI	GCGC	3 cut(s)	12, 1445, 2371
BstMAI	GTCTC	1 cut(s)	315
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 2240, 2414, 2457
BstNI	CCWGG	1 cut(s)	1685
BstNSI	RCATGY	2 cut(s)	497, 506
BstSCI	CCNGG	3 cut(s)	68, 69, 1683
BstSFI	CTRYAG	2 cut(s)	1210, 2449
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	1935, 2227, 2230
BstV2I	GAAGAC	1 cut(s)	2084
BstX2I	RGATCY	3 cut(s)	111, 1432, 1557
BstYI	RGATCY	3 cut(s)	111, 1432, 1557
Bsu36I	CCTNAGG	1 cut(s)	1260
BsuI	GTATCC	2 cut(s)	1026, 2438
BsuRI	GGCC	3 cut(s)	248, 271, 1683
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	6 cut(s)	540, 652, 970, 1024, 1207, 1857
BtsI	GCAGTG	2 cut(s)	597, 2235
BtsIMutI	CAGTG	6 cut(s)	58, 597, 872, 960, 1732, 2235
Cac8I	GCNNGC	5 cut(s)	226, 495, 896, 972, 1009
CfoI	GCGC	3 cut(s)	12, 1445, 2371
Cfr10I	RCCGGY	1 cut(s)	1491
Cfr13I	GGNCC	1 cut(s)	270
Cfr9I	CCCGGG	1 cut(s)	69
CseI	GACGC	2 cut(s)	30, 152
Csp6I	GTAC	9 cut(s)	79, 139, 325, 870, 1627, 1711, 1938, 2220, 2639
CviAII	CATG	6 cut(s)	484, 494, 503, 1037, 1158, 2231
CviQI	GTAC	9 cut(s)	79, 139, 325, 870, 1627, 1711, 1938, 2220, 2639
DdeI	CTNAG	7 cut(s)	5, 229, 1260, 1616, 1776, 2186, 2288
DraI	TTTAAA	3 cut(s)	1062, 2479, 2485
EciI	GGCGGA	1 cut(s)	725
Eco24I	GRGCYC	2 cut(s)	319, 1825
Eco57I	CTGAAG	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	1260
Eco88I	CYCGRG	2 cut(s)	69, 312
EcoNI	CCTNNNNNAGG	1 cut(s)	1263
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	1683
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	2 cut(s)	319, 1825
FaeI	CATG	6 cut(s)	487, 497, 506, 1040, 1161, 2234
FaqI	GGGAC	3 cut(s)	28, 86, 1806
FatI	CATG	6 cut(s)	483, 493, 502, 1036, 1157, 2230
FauI	CCCGC	1 cut(s)	125
FauNDI	CATATG	3 cut(s)	976, 1149, 1816
FbaI	TGATCA	3 cut(s)	1092, 2541, 2601
Fnu4HI	GCNGC	4 cut(s)	708, 1924, 2241, 2244
FokI	GGATG	6 cut(s)	547, 659, 977, 1031, 1214, 1864
FriOI	GRGCYC	2 cut(s)	319, 1825
Fsp4HI	GCNGC	4 cut(s)	708, 1924, 2241, 2244
FspBI	CTAG	4 cut(s)	1026, 1580, 2501, 2627
GlaI	GCGC	3 cut(s)	11, 1444, 2370
GluI	GCNGC	4 cut(s)	708, 1924, 2241, 2244
GsuI	CTGGAG	3 cut(s)	2184, 2627, 2631
HaeII	RGCGCY	2 cut(s)	13, 1446
HaeIII	GGCC	3 cut(s)	248, 271, 1683
HapII	CCGG	7 cut(s)	51, 70, 109, 199, 383, 644, 1492
HgaI	GACGC	2 cut(s)	30, 152
HhaI	GCGC	3 cut(s)	12, 1445, 2371
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	6 cut(s)	487, 497, 506, 1040, 1161, 2234
Hin6I	GCGC	3 cut(s)	10, 1443, 2369
HinP1I	GCGC	3 cut(s)	10, 1443, 2369
HindIII	AAGCTT	6 cut(s)	1109, 1241, 1653, 1863, 2472, 2585
HpaII	CCGG	7 cut(s)	51, 70, 109, 199, 383, 644, 1492
HphI	GGTGA	5 cut(s)	599, 682, 874, 2036, 2165
Hpy166II	GTNNAC	3 cut(s)	429, 872, 2257
Hpy188I	TCNGA	3 cut(s)	175, 838, 1224
Hpy8I	GTNNAC	3 cut(s)	429, 872, 2257
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 2240, 2414, 2457
HpyF3I	CTNAG	7 cut(s)	5, 229, 1260, 1616, 1776, 2186, 2288
HpySE526I	ACGT	1 cut(s)	656
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	6 cut(s)	487, 497, 506, 1040, 1161, 2234
HspAI	GCGC	3 cut(s)	10, 1443, 2369
Kpn2I	TCCGGA	2 cut(s)	198, 643
Ksp22I	TGATCA	3 cut(s)	1092, 2541, 2601
LmnI	GCTCC	6 cut(s)	809, 949, 1384, 1576, 1820, 2413
Lsp1109I	GCAGC	3 cut(s)	1935, 2227, 2230
LweI	GCATC	7 cut(s)	525, 1012, 1245, 1327, 1770, 1842, 2146
MaeI	CTAG	4 cut(s)	1026, 1580, 2501, 2627
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	8 cut(s)	593, 757, 1184, 1205, 1285, 1810, 2181, 2419
MbiI	CCGCTC	1 cut(s)	707
MboII	GAAGA	7 cut(s)	1442, 1552, 1661, 1760, 2084, 2175, 2585
MfeI	CAATTG	1 cut(s)	1701
MflI	RGATCY	3 cut(s)	111, 1432, 1557
MhlI	GDGCHC	2 cut(s)	319, 1825
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	3 cut(s)	157, 198, 784
Mph1103I	ATGCAT	1 cut(s)	499
MroI	TCCGGA	2 cut(s)	198, 643
MroXI	GAANNNNTTC	1 cut(s)	1244
MspI	CCGG	7 cut(s)	51, 70, 109, 199, 383, 644, 1492
MspR9I	CCNGG	3 cut(s)	70, 71, 1685
MunI	CAATTG	1 cut(s)	1701
MvaI	CCWGG	1 cut(s)	1685
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	24, 2240, 2414, 2457
NciI	CCSGG	2 cut(s)	70, 71
NdeI	CATATG	3 cut(s)	976, 1149, 1816
NlaIII	CATG	6 cut(s)	487, 497, 506, 1040, 1161, 2234
NlaIV	GGNNCC	3 cut(s)	951, 1380, 1822
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	593, 757
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	2 cut(s)	497, 506
PaeI	GCATGC	1 cut(s)	497
PciI	ACATGT	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	1244
PkrI	GCNGC	4 cut(s)	709, 1925, 2242, 2245
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Ppu21I	YACGTR	1 cut(s)	657
PscI	ACATGT	1 cut(s)	502
PshBI	ATTAAT	1 cut(s)	1515
PsiI	TTATAA	3 cut(s)	1293, 2333, 2556
Psp6I	CCWGG	1 cut(s)	1683
PspGI	CCWGG	1 cut(s)	1683
PspN4I	GGNNCC	3 cut(s)	951, 1380, 1822
PspPI	GGNCC	1 cut(s)	270
PsrI	GAACNNNNNNTAC	2 cut(s)	2446, 2478
PstI	CTGCAG	1 cut(s)	2453
PsuI	RGATCY	3 cut(s)	111, 1432, 1557
RsaI	GTAC	9 cut(s)	80, 140, 326, 871, 1628, 1712, 1939, 2221, 2640
RsaNI	GTAC	9 cut(s)	79, 139, 325, 870, 1627, 1711, 1938, 2220, 2639
SatI	GCNGC	4 cut(s)	708, 1924, 2241, 2244
Sau96I	GGNCC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	1939
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	70, 71, 1685
SduI	GDGCHC	2 cut(s)	319, 1825
SfaNI	GCATC	7 cut(s)	525, 1012, 1245, 1327, 1770, 1842, 2146
SfcI	CTRYAG	2 cut(s)	1210, 2449
SmaI	CCCGGG	1 cut(s)	71
SmlI	CTYRAG	3 cut(s)	278, 461, 1304
SmoI	CTYRAG	3 cut(s)	278, 461, 1304
SphI	GCATGC	1 cut(s)	497
SsiI	CCGC	6 cut(s)	25, 118, 528, 707, 710, 1550
SspI	AATATT	1 cut(s)	1692
SspMI	CTAG	4 cut(s)	1026, 1580, 2501, 2627
StyD4I	CCNGG	3 cut(s)	68, 69, 1683
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	7 cut(s)	105, 251, 319, 450, 662, 1248, 2365
TatI	WGTACW	5 cut(s)	78, 869, 1710, 1937, 2638
TauI	GCSGC	1 cut(s)	710
TscAI	CASTG	6 cut(s)	65, 604, 879, 960, 1732, 2242
TseFI	GTSAC	2 cut(s)	593, 757
TseI	GCWGC	3 cut(s)	1923, 2240, 2243
Tsp45I	GTSAC	2 cut(s)	593, 757
TspMI	CCCGGG	1 cut(s)	69
TspRI	CASTG	6 cut(s)	65, 604, 879, 960, 1732, 2242
VspI	ATTAAT	1 cut(s)	1515
XagI	CCTNNNNNAGG	1 cut(s)	1263
XapI	RAATTY	5 cut(s)	167, 263, 1928, 2043, 2480
XbaI	TCTAGA	1 cut(s)	2500
XceI	RCATGY	2 cut(s)	497, 506
XmaI	CCCGGG	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	1244
XspI	CTAG	4 cut(s)	1026, 1580, 2501, 2627
ZrmI	AGTACT	1 cut(s)	1939
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.