Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00659

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

155 .. 2173

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCAGGCTACAGGAGTAAAGCAAATTGTGTTTTGTTCGTCTCGGTATTGGGAAGCTTGGAATCAATGATGCCGCTTCACAGCGCCATTGCTTCTGCTCGGCTCAAGGTCTTCAATGCCGCTGCCATAGTGATTCAAGATTTTGATGCTGTTGTGAACAAGGGCTTCTTCAATGGATACTCAGTTCTCATGATTCTCAACCATGCATTCAGTGGCATTTCTGTGTCTATGGTAATTAATGAAGTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

83

Amino Acids

8.89

Weight (kDa)

7.83

Isoelectric Point (pI)

19.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 120
AgsI	TTSAA	3 cut(s)	115, 137, 172
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	74, 120, 123
BlsI	GCNGC	3 cut(s)	75, 121, 124
BmsI	GCATC	2 cut(s)	60, 136
BpiI	GAAGAC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	206
BspACI	CCGC	2 cut(s)	74, 120
BspCNI	CTCAG	1 cut(s)	194
BspHI	TCATGA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	86
CviAII	CATG	2 cut(s)	190, 203
CviJI	RGCY	4 cut(s)	9, 57, 103, 165
CviKI_1	RGCY	4 cut(s)	9, 57, 103, 165
DdeI	CTNAG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	193, 206
FaiI	YATR	5 cut(s)	128, 191, 204, 230, 247
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	2 cut(s)	189, 202
Fnu4HI	GCNGC	3 cut(s)	74, 120, 123
Fsp4HI	GCNGC	3 cut(s)	74, 120, 123
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	74, 120, 123
HaeII	RGCGCY	1 cut(s)	87
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	193, 206
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	3 cut(s)	62, 133, 193
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	137, 190
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	193, 206
HspAI	GCGC	1 cut(s)	84
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	60, 136
MboII	GAAGA	2 cut(s)	103, 160
MluCI	AATT	2 cut(s)	25, 234
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	193, 206
NmeAIII	GCCGAG	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	208
PagI	TCATGA	1 cut(s)	189
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	62, 133, 193
PkrI	GCNGC	3 cut(s)	75, 121, 124
PshBI	ATTAAT	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	74, 120, 123
SetI	ASST	2 cut(s)	59, 111
SfaNI	GCATC	2 cut(s)	60, 136
SfcI	CTRYAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	25, 234
SsiI	CCGC	2 cut(s)	74, 120
TasI	AATT	2 cut(s)	25, 234
TauI	GCSGC	2 cut(s)	76, 122
TfiI	GAWTC	3 cut(s)	62, 133, 193
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	122
TspRI	CASTG	1 cut(s)	217
VspI	ATTAAT	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.