Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Reverse (-)

55962993 .. 55963258

Gene Structure 266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGACTCTTGTGGTTGAGAGTTTTAGGTCAAGACTTGAAGGCACTGAGAAGATGTTGGAACATATACCTGTTGTTGGATTTCTTGCAGCAAAACTTGTTGAGCTTATTTCAGGAGCACAGACAAGGTATACTTACATGTCGGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

49

Amino Acids

5.45

Weight (kDa)

6.54

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	37
BssMI	GATC	1 cut(s)	143
BssNAI	GTATAC	1 cut(s)	129
Bst1107I	GTATAC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	42
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	1 cut(s)	103
CviKI_1	RGCY	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
FaeI	CATG	1 cut(s)	139
FaiI	YATR	5 cut(s)	63, 65, 129, 137, 148
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FatI	CATG	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspEI	CC	9 cut(s)	10, 24, 41, 60, 81, 96, 109, 125, 126
GluI	GCNGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	3 cut(s)	30, 111, 141
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	2 cut(s)	81, 96
Lsp1109I	GCAGC	1 cut(s)	98
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	36, 55
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	139
NspI	RCATGY	1 cut(s)	139
PciI	ACATGT	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	135
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	4 cut(s)	29, 70, 105, 128
SgeI	CNNG	8 cut(s)	20, 42, 47, 80, 95, 107, 123, 135
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	1 cut(s)	86
TspRI	CASTG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.