RLG00000036136

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000678
Physical Location & Seq
Reverse (-)
76252381 .. 76254207
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036136

Sequence Viewer

Length: 471 bp
ATGGCCTACCTCCTCTCAAAAGATTCAAACTTATGCAGCAACCAGCACCGCCACCACCTTGATGATGTCATTTTGCCCATTCTTCCTGCGAAGAAGAGAAAGGAGACTAGGGACCAGCCCATTCTCCCTAACCCAACTCCTACCACCTATGATGTAATCACTATGATGCAATGTTCGAATTGGGTTTCTGTAGTGTTGAATTCGTTGTCTCGGATGTCGGGTTCTTTAAATCAGAATACAGATAACTTTGTTATACATCACATACACAAAGAAAACACTAAAAAGCTCCATAATATTCTGTATGGTGATGCTAAAGGATGGTTTAAAAGAACCTGTTCTTTTCTGTATCCATATGTTCTCGGAGTTACTAGATTTCAATATTTTCCCAGTACCTCCTTGGCTTACAGATGGTTAACCAATGTCTTTGAGATGCCTGCCATAACTCTAATCTGCAGTCATGCGGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

157

Amino Acids

17.97

Weight (kDa)

9.25

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 461
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 1 cut(s) 391
AgsI TTSAA 3 cut(s) 27, 199, 377
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 2 cut(s) 98, 213
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 317
AsuII TTCGAA 1 cut(s) 176
AvaII GGWCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 312, 402
BciVI GTATCC 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 98, 213
BfaI CTAG 2 cut(s) 108, 369
BfmI CTRYAG 2 cut(s) 189, 451
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 156, 298, 420
BmuI ACTGGG 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 219, 323
BseMI GCAATG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 98, 213
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 176
BspACI CCGC 2 cut(s) 49, 461
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 455
BspT104I TTCGAA 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 396
Bst6I CTCTTC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 435
BstF5I GGATG 2 cut(s) 219, 323
BstMAI GTCTC 2 cut(s) 98, 213
BstSFI CTRYAG 2 cut(s) 189, 451
BstV1I GCAGC 1 cut(s) 48
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 219, 323
Cac8I GCNNGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 390
CviAII CATG 1 cut(s) 458
CviJI RGCY 4 cut(s) 5, 118, 286, 401
CviKI_1 RGCY 4 cut(s) 5, 118, 286, 401
CviQI GTAC 1 cut(s) 390
DraI TTTAAA 2 cut(s) 228, 325
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 461
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 457
FauI CCCGC 1 cut(s) 454
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 2 cut(s) 226, 330
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 2 cut(s) 108, 369
GluI GCNGC 1 cut(s) 37
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 461
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 1 cut(s) 23
HpaI GTTAAC 1 cut(s) 414
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 3 cut(s) 213, 234, 362
Hpy8I GTNNAC 1 cut(s) 414
HpyCH4V TGCA 3 cut(s) 36, 169, 453
Hsp92II CATG 1 cut(s) 461
KspAI GTTAAC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 6 cut(s) 56, 99, 128, 346, 400, 447
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 3 cut(s) 156, 298, 420
MaeI CTAG 2 cut(s) 108, 369
MaeIII GTNAC 1 cut(s) 364
MboII GAAGA 3 cut(s) 74, 103, 106
MluCI AATT 2 cut(s) 178, 199
MnlI CCTC 3 cut(s) 20, 23, 403
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 4 cut(s) 227, 324, 413, 469
MslI CAYNNNNRTG 2 cut(s) 60, 164
NdeI CATATG 1 cut(s) 352
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 1 cut(s) 113
NspV TTCGAA 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
PstI CTGCAG 1 cut(s) 455
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 2 cut(s) 60, 164
SaqAI TTAA 4 cut(s) 227, 324, 413, 469
SatI GCNGC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 112
SetI ASST 6 cut(s) 12, 60, 149, 288, 335, 395
SfaNI GCATC 3 cut(s) 156, 298, 420
SfcI CTRYAG 2 cut(s) 189, 451
SfuI TTCGAA 1 cut(s) 176
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 60, 164
Sse9I AATT 2 cut(s) 178, 199
SsiI CCGC 2 cut(s) 49, 461
SspI AATATT 2 cut(s) 295, 380
SspMI CTAG 2 cut(s) 108, 369
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 178, 199
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 4 cut(s) 227, 324, 413, 469
Tru9I TTAA 4 cut(s) 227, 324, 413, 469
TseI GCWGC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 108, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.