FvH4_6g44780

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000678
Physical Location & Seq
Forward (+)
34478168 .. 34481488
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44780.t1

Sequence Viewer

Length: 918 bp
ATGGTAATTATTGGACTGGGACTCATCTTGTTTGCTCTTTTGATTGGAAATATGCAGAATTTTCTTCAGTCTCTTGGACGAAGGAGGTTTGATATGTTATTACGGAGTCGTGATGTTGAGCAGTGGATGCGTTATAGGAACTTGCCAGAAGAGCTTAGAAGGCAAGTAAGAAATGCTGAACGGTATAATTGGTCTGCCACACAAGGTGTAAATGAAGAATTAATTCTGGAAAATTTGCCTGAACACCTTCAGAGAAATATAAGACGCCATCTTTTCGAATTTGTGAAGAAAGTTCGGATCTTTGCTCTGATGGATGATCCTATCTTAGATGCGATTTGTGAGAAACTGAAACAAAAAACATACATTGAAGGAAACGAAATTTTGTATCCTGGAGGTATGGTTGAGAATATGGTGTTTATTGTTCGTGGAAAGATGGAGAGCATTGGGGAAGATGGGACTATTGATGACACATTAAAGGAAGGTGATGTTTGTGGTGAGGAACTTCTCAGATGGTGTCTTGAGTCTTCTGTAAACAATGATGGGAAAAATGTCAGAATCACTGGTCGGAGATTGCTCAGCAACAGATTGGTGAGGTGCTTAACAAACGTGGAAGCATTTCAACTCCGAGCTGCAGACCTTGAACAGTTCACGGCACGTTTTGCAAGATACTTGCGTAATCCACGTGTGCAAGGAGCCATAAGGTATGAATCTCCATATTGGAGAGGGCTTGCTGCAAAGCGAATTCAAGTAGCATGGAGGTATAGGCAAAAGCGTCTAAATCGTGCAAGCCCACAGAGTTACCCACGAAGCCCTTACTCCGATCAAAGTGCAGCTGACTTCTTGAGATCAACTTATCGCCCACATAGTTGGGGACTTGGAAATGATGCTAGGGAGCGGGAACGCTGGGGCCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

306

Amino Acids

35.93

Weight (kDa)

9.74

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 895
AciI CCGC 1 cut(s) 895
AclWI GGATC 2 cut(s) 305, 311
AcsI RAATTY 5 cut(s) 58, 232, 278, 378, 741
AcuI CTGAAG 2 cut(s) 50, 233
AcvI CACGTG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 4 cut(s) 368, 620, 641, 746
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 3 cut(s) 154, 629, 833
AluI AGCT 3 cut(s) 154, 629, 833
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 2 cut(s) 305, 311
AoxI GGCC 1 cut(s) 907
ApeKI GCWGC 3 cut(s) 629, 731, 830
ApoI RAATTY 5 cut(s) 58, 232, 278, 378, 741
AseI ATTAAT 1 cut(s) 221
Asp700I GAANNNNTTC 3 cut(s) 222, 246, 615
AspS9I GGNCC 1 cut(s) 907
AsuHPI GGTGA 3 cut(s) 494, 506, 601
AsuII TTCGAA 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 658, 691
BbrPI CACGTG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 616, 718, 842
BccI CCATC 6 cut(s) 276, 304, 427, 446, 504, 533
BceAI ACGGC 1 cut(s) 666
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 888
BfmI CTRYAG 1 cut(s) 630
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 3 cut(s) 630, 732, 831
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 3 cut(s) 631, 733, 832
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 907
BmiI GGNNCC 2 cut(s) 694, 908
BmrFI CCNGG 1 cut(s) 390
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 3 cut(s) 117, 319, 874
BmuI ACTGGG 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 575
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 539, 862
BsaAI YACGTR 1 cut(s) 683
BsaHI GRCGYC 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bse1I ACTGG 2 cut(s) 21, 565
BseBI CCWGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 132, 319
BseMII CTCAG 2 cut(s) 520, 589
BseNI ACTGG 2 cut(s) 21, 565
BseXI GCAGC 3 cut(s) 616, 718, 842
BseYI CCCAGC 1 cut(s) 903
BsgI GTGCAG 1 cut(s) 849
BshFI GGCC 1 cut(s) 909
BslFI GGGAC 3 cut(s) 33, 469, 885
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 3 cut(s) 33, 469, 885
BsnI GGCC 1 cut(s) 909
Bsp119I TTCGAA 1 cut(s) 276
Bsp143I GATC 4 cut(s) 297, 316, 820, 845
Bsp1720I GCTNAGC 1 cut(s) 575
BspACI CCGC 1 cut(s) 895
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 2 cut(s) 519, 588
BspLI GGNNCC 2 cut(s) 694, 908
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 2 cut(s) 305, 311
BspQI GCTCTTC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 895
BsrI ACTGG 2 cut(s) 21, 565
BssMI GATC 4 cut(s) 297, 316, 820, 845
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 183, 645
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 265
BstAPI GCANNNNNTGC 2 cut(s) 127, 659
BstBAI YACGTR 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 729, 787
BstDEI CTNAG 4 cut(s) 155, 325, 506, 575
BstF5I GGATG 2 cut(s) 132, 319
BstKTI GATC 4 cut(s) 300, 319, 823, 848
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 4 cut(s) 297, 316, 820, 845
BstMWI GCNNNNNNNGC 4 cut(s) 127, 151, 160, 659
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 3 cut(s) 616, 718, 842
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 867
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 909
BtsCI GGATG 2 cut(s) 132, 319
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 558
Cac8I GCNNGC 2 cut(s) 729, 787
Cfr13I GGNCC 1 cut(s) 907
CseI GACGC 2 cut(s) 273, 761
CviAII CATG 1 cut(s) 753
CviJI RGCY 8 cut(s) 154, 629, 695, 727, 789, 810, 833, 909
CviKI_1 RGCY 8 cut(s) 154, 629, 695, 727, 789, 810, 833, 909
DdeI CTNAG 4 cut(s) 155, 325, 506, 575
DpnI GATC 4 cut(s) 299, 318, 822, 847
DpnII GATC 4 cut(s) 297, 316, 820, 845
DraIII CACNNNGTG 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 50, 233
Eco72I CACGTG 1 cut(s) 683
EcoO109I RGGNCCY 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 741
EcoRII CCWGG 1 cut(s) 388
FaeI CATG 1 cut(s) 756
FaqI GGGAC 3 cut(s) 33, 469, 885
FatI CATG 1 cut(s) 752
FauI CCCGC 1 cut(s) 888
Fnu4HI GCNGC 3 cut(s) 630, 732, 831
FokI GGATG 2 cut(s) 139, 326
Fsp4HI GCNGC 3 cut(s) 630, 732, 831
FspBI CTAG 1 cut(s) 888
GluI GCNGC 3 cut(s) 630, 732, 831
GsaI CCCAGC 1 cut(s) 907
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 909
HgaI GACGC 2 cut(s) 273, 761
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 1 cut(s) 756
HinfI GANTC 5 cut(s) 21, 106, 521, 555, 707
HphI GGTGA 3 cut(s) 494, 506, 601
Hpy166II GTNNAC 2 cut(s) 532, 648
Hpy188I TCNGA 9 cut(s) 252, 297, 309, 509, 554, 567, 626, 820, 917
Hpy188III TCNNGA 4 cut(s) 110, 227, 518, 841
Hpy8I GTNNAC 2 cut(s) 532, 648
HpyAV CCTTC 5 cut(s) 75, 153, 257, 362, 473
HpyCH4III ACNGT 2 cut(s) 183, 645
HpyCH4IV ACGT 3 cut(s) 606, 655, 682
HpyCH4V TGCA 7 cut(s) 55, 632, 662, 688, 734, 785, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 151, 160, 659
HpyF3I CTNAG 4 cut(s) 155, 325, 506, 575
HpySE526I ACGT 3 cut(s) 606, 655, 682
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 1 cut(s) 756
Kzo9I GATC 4 cut(s) 297, 316, 820, 845
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 2 cut(s) 692, 892
LpnPI CCDG 8 cut(s) 2, 159, 212, 252, 375, 402, 546, 889
Lsp1109I GCAGC 3 cut(s) 616, 718, 842
LweI GCATC 3 cut(s) 117, 319, 874
MaeI CTAG 1 cut(s) 888
MaeII ACGT 3 cut(s) 606, 655, 682
MaeIII GTNAC 1 cut(s) 797
MalI GATC 4 cut(s) 299, 318, 822, 847
MbiI CCGCTC 1 cut(s) 895
MboI GATC 4 cut(s) 297, 316, 820, 845
MboII GAAGA 6 cut(s) 56, 161, 227, 298, 461, 516
MflI RGATCY 1 cut(s) 297
MluCI AATT 9 cut(s) 6, 58, 187, 218, 222, 232, 278, 378, 741
MlyI GAGTC 3 cut(s) 15, 115, 530
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 6 cut(s) 78, 386, 490, 585, 716, 750
MroXI GAANNNNTTC 3 cut(s) 222, 246, 615
MseI TTAA 3 cut(s) 221, 473, 599
MspA1I CMGCKG 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 4 cut(s) 127, 151, 160, 659
NdeII GATC 4 cut(s) 297, 316, 820, 845
NlaIII CATG 1 cut(s) 756
NlaIV GGNNCC 2 cut(s) 694, 908
NspV TTCGAA 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 144
PdmI GAANNNNTTC 3 cut(s) 222, 246, 615
PfeI GAWTC 2 cut(s) 555, 707
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 3 cut(s) 631, 733, 832
PleI GAGTC 3 cut(s) 15, 114, 529
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
PpsI GAGTC 3 cut(s) 15, 114, 529
Ppu21I YACGTR 1 cut(s) 683
PshBI ATTAAT 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 388
PspCI CACGTG 1 cut(s) 683
PspFI CCCAGC 1 cut(s) 903
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 694, 908
PspPI GGNCC 1 cut(s) 907
PstI CTGCAG 1 cut(s) 634
PsuI RGATCY 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 833
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 221, 473, 599
SatI GCNGC 3 cut(s) 630, 732, 831
Sau3AI GATC 4 cut(s) 297, 316, 820, 845
Sau96I GGNCC 1 cut(s) 907
SchI GAGTC 3 cut(s) 15, 115, 530
ScrFI CCNGG 1 cut(s) 390
SfaNI GCATC 3 cut(s) 117, 319, 874
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 518, 841
SmoI CTYRAG 2 cut(s) 518, 841
Sse9I AATT 9 cut(s) 6, 58, 187, 218, 222, 232, 278, 378, 741
SsiI CCGC 1 cut(s) 895
SspMI CTAG 1 cut(s) 888
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 183, 645
TaiI ACGT 3 cut(s) 609, 658, 685
TaqI TCGA 1 cut(s) 276
TasI AATT 9 cut(s) 6, 58, 187, 218, 222, 232, 278, 378, 741
TfiI GAWTC 2 cut(s) 555, 707
Tru1I TTAA 3 cut(s) 221, 473, 599
Tru9I TTAA 3 cut(s) 221, 473, 599
TscAI CASTG 2 cut(s) 128, 565
TseI GCWGC 3 cut(s) 629, 731, 830
TspDTI ATGAA 2 cut(s) 228, 720
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 2 cut(s) 128, 565
VspI ATTAAT 1 cut(s) 221
XapI RAATTY 5 cut(s) 58, 232, 278, 378, 741
XmnI GAANNNNTTC 3 cut(s) 222, 246, 615
XspI CTAG 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.