Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

67134395 .. 67141613

Gene Structure 7219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGGCTGATCATGAAAGAGATGAGGTACCTATGCTTTCGGATACTCATCCACAGTCATCAAATGAGCACCTGCCATTACAAATTGAGAGATTTATGTCCAGGACACGGAGCGCATCAATTTCGATTCCTATGAATTCTATGGATTCATATGAAAGGGGTGAAGTTAACCTTGTAGGCCATACTGGTCCCTTAAGAACTCACACAAAAACACCCTTCTTACCTATGAGCGGTCCGTTATATGCTAACTGCGGCAGGCCTGATAGTGTTCTGCGGCTAACTCGAGGTGTGACAGGGCAAGAAGCAGCAGAAACTACAGCAGAAAAGTTTCCTTCTACTAGTGCAACAAATGAGAATGAGTGGAATGACGACTATACTGCAAAAAACGAACACTTACTGAGATCTGGCCAATTGGGGATGTGCCATGATCCTTACTGCACAACTTGCCCAACTGTCTATAAGGCTACTCAACCAAAATACTCGAGGCCCTCAGGCAAGTTCCATAATGCTCTCTATGGGGATGCCAAAGGATGGGCCAGGAGGTTTTTCTCATGTCTGCGTCCATACATTCCTGGAGATAATAAATGTATAGTTATTGATCAGCCATTGACCACTACTTTTGTAGTTTTCAGAAGCATGACTGATCTCATATACTTCATGCACATGCTTCTCCAGTTTAGATTGGCTTATGTGGCTCCCGAGTCTAGAGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCTCTCAATTACCTTAAAGGATATTTTCTGATTGACTTTTTTGTTGTATTACCACTTCCTCAGATCATACTATTACTAGTTCTGCCAAAGAACTTGGGATTATCTGGAGCAAACTACGCAAAAAATCTTTTACGTGCTGCCGTTCTTCTTCAGTACATTCCCAGGTTGTGTAGGTTTCTACCTCTGCTTGCTGGACAGTCACCAAGTGGCTTCATATTTGAGTCAGCATGGGCCAATTTTATAATAAATCTTCTCACTTTTGTCTTATCTGGCCACATCGTCGGGTCATGCTGGTACCTCTTTGGATTACAGAGGGTTAATCAATGTTTTCGAGATGCCTGTCACAACTCTGGGATTGAAGGATGCATGAGGTTCATAGACTGTGGGCATGGAAGTGACAGTGAAGGTTCTGAAGGGGATGTGGGACCTCGTAATAACTGGACAAACAATGCAAATGCTGCTGCTTGTTTTAACCAAACTAGTTTTGATTACGGAATCTACGCCCAAGCTGTTAACCTTACGACAGAAAATAGCATAATCACTAGATATGATGTGACACATATGATTGGTCTAATATGTAGGCGAGTACGACAAGCTGAAAGGTATAATTGGGCAGCTAACAGAGGAGTAAATGAAGAAATGCTTTTGGATGTCTTGCCTGAAGACCTTCAGACAGATATAAGACGCCATCTCTTCAAGTTTATTAAGAAAGTAAGGATTTTTGCCCTCATGGATGAACCGATCTTAGATTCCATTTGCGGAAGACTAAGACAGAAGACATACATCCAAGGAAGCAAAGTTTTGTACTGTGGTGGTCTAATTGAGAAGATGGTCTTTATTGTGCGCGGAAAAATGGAGAGCATAGGAGAAGATGGGATTAGAGTTTCCTTATCTGAAGGGGATGTTTGTGGTGAGGAGCTTCTCTCATGGTGTCTCGAGCATTCTTCGGTAAATAAAGACGGTAAAAAGATCAGGATTCCTGGACAGCGAATGTTAAGCAACAGGATGGTGATATGCTTAACAAATGTCGAAGCATTTTCACTAAGGGCAGCTGACATTGAAGAGGTCACCAGCCTCTTTGCCAGATTCTTGCGCAAACCACGTGTTCAAGGAGCCATAAGGTCAGACAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

627

Amino Acids

70.61

Weight (kDa)

8.42

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	203 - 424	1.9e-13	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	989
AarI	CACCTGC	1 cut(s)	78
Acc16I	TGCGCA	1 cut(s)	1841
Acc36I	ACCTGC	1 cut(s)	78
Acc65I	GGTACC	2 cut(s)	25, 1041
AccB1I	GGYRCC	2 cut(s)	25, 1041
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	228
AccII	CGCG	1 cut(s)	1593
AciI	CCGC	5 cut(s)	228, 249, 271, 1506, 1593
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	2 cut(s)	403, 1018
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	5 cut(s)	881, 1179, 1400, 1428, 1662
AcvI	CACGTG	1 cut(s)	1850
AcyI	GRCGYC	1 cut(s)	1432
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	5 cut(s)	27, 902, 1043, 1335, 1553
AfiI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	1849
AgsI	TTSAA	4 cut(s)	1106, 1444, 1808, 1856
AhlI	ACTAGT	3 cut(s)	335, 823, 1226
AjnI	CCWGG	5 cut(s)	98, 533, 568, 908, 1726
AluBI	AGCT	5 cut(s)	1256, 1343, 1364, 1666, 1799
AluI	AGCT	5 cut(s)	1256, 1343, 1364, 1666, 1799
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	1685
AlwI	GGATC	1 cut(s)	419
Ama87I	CYCGRG	4 cut(s)	279, 478, 695, 1682
AoxI	GGCC	7 cut(s)	175, 254, 403, 482, 531, 978, 1018
ApeKI	GCWGC	6 cut(s)	302, 884, 1205, 1208, 1361, 1796
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	2 cut(s)	324, 1413
Asp718I	GGTACC	2 cut(s)	25, 1041
AspLEI	GCGC	3 cut(s)	113, 1593, 1842
AspS9I	GGNCC	6 cut(s)	185, 230, 483, 531, 978, 1172
AsuHPI	GGTGA	5 cut(s)	170, 939, 1670, 1768, 1807
AvaI	CYCGRG	4 cut(s)	279, 478, 695, 1682
AvaII	GGWCC	3 cut(s)	185, 230, 1172
AxyI	CCTNAGG	1 cut(s)	487
BalI	TGGCCA	2 cut(s)	405, 1020
BanI	GGYRCC	2 cut(s)	25, 1041
BarI	GAAGNNNNNNTAC	2 cut(s)	786, 818
BbrPI	CACGTG	1 cut(s)	1850
BbsI	GAAGAC	3 cut(s)	1416, 1516, 1529
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	6 cut(s)	314, 871, 1192, 1195, 1373, 1808
BccI	CCATC	6 cut(s)	522, 741, 1443, 1570, 1613, 1747
BceAI	ACGGC	1 cut(s)	872
BcgI	CGANNNNNNTGC	4 cut(s)	102, 136, 356, 390
BciT130I	CCWGG	5 cut(s)	100, 535, 570, 910, 1728
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	2 cut(s)	7, 595
BcoDI	GTCTC	1 cut(s)	1685
BcuI	ACTAGT	3 cut(s)	335, 823, 1226
BfaI	CTAG	5 cut(s)	336, 702, 824, 1227, 1290
BfmI	CTRYAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	34
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	8 cut(s)	250, 272, 303, 885, 1206, 1209, 1362, 1797
BlsI	GCNGC	8 cut(s)	251, 273, 304, 886, 1207, 1210, 1363, 1798
Bme1390I	CCNGG	5 cut(s)	100, 535, 570, 910, 1728
Bme18I	GGWCC	3 cut(s)	185, 230, 1172
BmeT110I	CYCGRG	4 cut(s)	279, 478, 695, 1682
BmgT120I	GGNCC	6 cut(s)	185, 230, 483, 531, 978, 1172
BmiI	GGNNCC	6 cut(s)	27, 187, 693, 1043, 1173, 1861
BmrFI	CCNGG	5 cut(s)	100, 535, 570, 910, 1728
BmsI	GCATC	4 cut(s)	122, 508, 1072, 1100
BpiI	GAAGAC	3 cut(s)	1416, 1516, 1529
BplI	GAGNNNNNCTC	2 cut(s)	1655, 1687
BpmI	CTGGAG	4 cut(s)	591, 653, 738, 873
BsaAI	YACGTR	2 cut(s)	881, 1850
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	1432
BsaJI	CCNNGG	2 cut(s)	908, 1534
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 227, 528
Bse1I	ACTGG	3 cut(s)	187, 670, 1190
Bse21I	CCTNAGG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	5 cut(s)	100, 535, 570, 910, 1728
BseDI	CCNNGG	2 cut(s)	908, 1534
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BseMII	CTCAG	3 cut(s)	386, 501, 821
BseNI	ACTGG	3 cut(s)	187, 670, 1190
BseRI	GAGGAG	2 cut(s)	1386, 1676
BseXI	GCAGC	6 cut(s)	314, 871, 1192, 1195, 1373, 1808
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	1593
BshFI	GGCC	7 cut(s)	177, 256, 405, 484, 533, 980, 1020
BshNI	GGYRCC	2 cut(s)	25, 1041
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	4 cut(s)	279, 478, 695, 1682
BslFI	GGGAC	2 cut(s)	171, 1185
BslI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BsmAI	GTCTC	1 cut(s)	1685
BsmFI	GGGAC	2 cut(s)	171, 1185
BsmI	GAATGC	1 cut(s)	1687
BsnI	GGCC	7 cut(s)	177, 256, 405, 484, 533, 980, 1020
BsoBI	CYCGRG	4 cut(s)	279, 478, 695, 1682
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
BspACI	CCGC	5 cut(s)	228, 249, 271, 1506, 1593
BspANI	GGCC	7 cut(s)	177, 256, 405, 484, 533, 980, 1020
BspCNI	CTCAG	3 cut(s)	387, 500, 820
BspFNI	CGCG	1 cut(s)	1593
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	6 cut(s)	27, 187, 693, 1043, 1173, 1861
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	2 cut(s)	25, 1041
BspTI	CTTAAG	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	187, 670, 1190
BssECI	CCNNGG	2 cut(s)	908, 1534
BssMI	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
BssNI	GRCGYC	1 cut(s)	1432
BssT1I	CCWWGG	1 cut(s)	1534
Bst2UI	CCWGG	5 cut(s)	100, 535, 570, 910, 1728
Bst4CI	ACNGT	7 cut(s)	54, 451, 945, 1130, 1148, 1556, 1709
Bst6I	CTCTTC	2 cut(s)	1445, 1803
BstACI	GRCGYC	1 cut(s)	1432
BstAFI	CTTAAG	1 cut(s)	190
BstAPI	GCANNNNNTGC	2 cut(s)	441, 1205
BstBAI	YACGTR	2 cut(s)	881, 1850
BstC8I	GCNNGC	2 cut(s)	254, 936
BstDEI	CTNAG	6 cut(s)	395, 487, 807, 1492, 1514, 1790
BstEII	GGTNACC	1 cut(s)	1813
BstFNI	CGCG	1 cut(s)	1593
BstHHI	GCGC	3 cut(s)	113, 1593, 1842
BstKTI	GATC	8 cut(s)	10, 401, 427, 598, 643, 813, 1491, 1719
BstMAI	GTCTC	1 cut(s)	1685
BstMBI	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
BstMWI	GCNNNNNNNGC	4 cut(s)	441, 689, 863, 1205
BstNI	CCWGG	5 cut(s)	100, 535, 570, 910, 1728
BstNSI	RCATGY	1 cut(s)	664
BstPI	GGTNACC	1 cut(s)	1813
BstSCI	CCNGG	5 cut(s)	98, 533, 568, 908, 1726
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	1593
BstV1I	GCAGC	6 cut(s)	314, 871, 1192, 1195, 1373, 1808
BstV2I	GAAGAC	3 cut(s)	1416, 1516, 1529
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	7 cut(s)	177, 256, 405, 484, 533, 980, 1020
BtsIMutI	CAGTG	1 cut(s)	1153
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	254, 936
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	3 cut(s)	113, 1593, 1842
Cfr13I	GGNCC	6 cut(s)	185, 230, 483, 531, 978, 1172
CpoI	CGGWCCG	1 cut(s)	230
CseI	GACGC	2 cut(s)	545, 1440
Csp6I	GTAC	5 cut(s)	26, 901, 1042, 1334, 1552
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CspI	CGGWCCG	1 cut(s)	230
CviQI	GTAC	5 cut(s)	26, 901, 1042, 1334, 1552
DdeI	CTNAG	6 cut(s)	395, 487, 807, 1492, 1514, 1790
DpnI	GATC	8 cut(s)	9, 400, 426, 597, 642, 812, 1490, 1718
DpnII	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
DraIII	CACNNNGTG	1 cut(s)	953
EaeI	YGGCCR	2 cut(s)	403, 1018
Eam1104I	CTCTTC	2 cut(s)	1445, 1803
EarI	CTCTTC	2 cut(s)	1445, 1803
Eco130I	CCWWGG	1 cut(s)	1534
Eco147I	AGGCCT	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	185, 230, 1172
Eco57I	CTGAAG	5 cut(s)	881, 1179, 1400, 1428, 1662
Eco72I	CACGTG	1 cut(s)	1850
Eco81I	CCTNAGG	1 cut(s)	487
Eco88I	CYCGRG	4 cut(s)	279, 478, 695, 1682
Eco91I	GGTNACC	1 cut(s)	1813
EcoO109I	RGGNCCY	2 cut(s)	483, 1172
EcoO65I	GGTNACC	1 cut(s)	1813
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	5 cut(s)	98, 533, 568, 908, 1726
EcoT14I	CCWWGG	1 cut(s)	1534
EcoT22I	ATGCAT	1 cut(s)	1115
ErhI	CCWWGG	1 cut(s)	1534
FalI	AAGNNNNNCTT	6 cut(s)	153, 185, 1374, 1406, 1565, 1597
FaqI	GGGAC	2 cut(s)	171, 1185
FauNDI	CATATG	2 cut(s)	148, 1308
FbaI	TGATCA	2 cut(s)	7, 595
Fnu4HI	GCNGC	8 cut(s)	250, 272, 303, 885, 1206, 1209, 1362, 1797
Fsp4HI	GCNGC	8 cut(s)	250, 272, 303, 885, 1206, 1209, 1362, 1797
FspBI	CTAG	5 cut(s)	336, 702, 824, 1227, 1290
FspI	TGCGCA	1 cut(s)	1841
GlaI	GCGC	3 cut(s)	112, 1592, 1841
GluI	GCNGC	8 cut(s)	250, 272, 303, 885, 1206, 1209, 1362, 1797
GsuI	CTGGAG	4 cut(s)	591, 653, 738, 873
HaeIII	GGCC	7 cut(s)	177, 256, 405, 484, 533, 980, 1020
HgaI	GACGC	2 cut(s)	545, 1440
HhaI	GCGC	3 cut(s)	113, 1593, 1842
Hin1I	GRCGYC	1 cut(s)	1432
Hin6I	GCGC	3 cut(s)	111, 1591, 1840
HinP1I	GCGC	3 cut(s)	111, 1591, 1840
HincII	GTYRAC	3 cut(s)	166, 730, 1261
HindII	GTYRAC	3 cut(s)	166, 730, 1261
HinfI	GANTC	8 cut(s)	124, 143, 698, 968, 1242, 1496, 1723, 1833
HpaI	GTTAAC	2 cut(s)	166, 1261
HphI	GGTGA	5 cut(s)	170, 939, 1670, 1768, 1807
Hpy166II	GTNNAC	3 cut(s)	166, 730, 1261
Hpy188I	TCNGA	8 cut(s)	40, 629, 777, 810, 1159, 1419, 1642, 1873
Hpy188III	TCNNGA	7 cut(s)	11, 695, 702, 852, 1079, 1682, 1720
Hpy8I	GTNNAC	3 cut(s)	166, 730, 1261
Hpy99I	CGWCG	1 cut(s)	1031
HpyAV	CCTTC	7 cut(s)	223, 339, 1100, 1145, 1154, 1424, 1637
HpyCH4III	ACNGT	7 cut(s)	54, 451, 945, 1130, 1148, 1556, 1709
HpyCH4IV	ACGT	2 cut(s)	880, 1849
HpyCH4V	TGCA	6 cut(s)	341, 377, 435, 658, 1113, 1199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	441, 689, 863, 1205
HpyF3I	CTNAG	6 cut(s)	395, 487, 807, 1492, 1514, 1790
HpySE526I	ACGT	2 cut(s)	880, 1849
Hsp92I	GRCGYC	1 cut(s)	1432
HspAI	GCGC	3 cut(s)	111, 1591, 1840
KpnI	GGTACC	2 cut(s)	29, 1045
Ksp22I	TGATCA	2 cut(s)	7, 595
KspAI	GTTAAC	2 cut(s)	166, 1261
Kzo9I	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
LmnI	GCTCC	5 cut(s)	108, 697, 854, 1663, 1859
Lsp1109I	GCAGC	6 cut(s)	314, 871, 1192, 1195, 1373, 1808
LweI	GCATC	4 cut(s)	122, 508, 1072, 1100
MaeI	CTAG	5 cut(s)	336, 702, 824, 1227, 1290
MaeII	ACGT	2 cut(s)	880, 1849
MaeIII	GTNAC	6 cut(s)	286, 945, 1088, 1142, 1300, 1813
MalI	GATC	8 cut(s)	9, 400, 426, 597, 642, 812, 1490, 1718
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	2 cut(s)	405, 1020
MluCI	AATT	9 cut(s)	81, 117, 133, 407, 744, 754, 982, 1354, 1566
MluNI	TGGCCA	2 cut(s)	405, 1020
MlyI	GAGTC	2 cut(s)	707, 977
Mox20I	TGGCCA	2 cut(s)	405, 1020
Mph1103I	ATGCAT	1 cut(s)	1115
MroXI	GAANNNNTTC	2 cut(s)	324, 1413
MscI	TGGCCA	2 cut(s)	405, 1020
MseI	TTAA	9 cut(s)	165, 191, 762, 1065, 1218, 1260, 1452, 1742, 1766
MslI	CAYNNNNRTG	2 cut(s)	659, 1140
Msp20I	TGGCCA	2 cut(s)	405, 1020
MspA1I	CMGCKG	1 cut(s)	1799
MspCI	CTTAAG	1 cut(s)	190
MspR9I	CCNGG	5 cut(s)	100, 535, 570, 910, 1728
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	1687
MvaI	CCWGG	5 cut(s)	100, 535, 570, 910, 1728
MvnI	CGCG	1 cut(s)	1593
MwoI	GCNNNNNNNGC	4 cut(s)	441, 689, 863, 1205
NdeI	CATATG	2 cut(s)	148, 1308
NdeII	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
NlaIV	GGNNCC	6 cut(s)	27, 187, 693, 1043, 1173, 1861
NmuCI	GTSAC	6 cut(s)	286, 945, 1088, 1142, 1300, 1813
NsbI	TGCGCA	1 cut(s)	1841
NsiI	ATGCAT	1 cut(s)	1115
NspI	RCATGY	1 cut(s)	664
PaeR7I	CTCGAG	3 cut(s)	279, 478, 1682
PagI	TCATGA	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	1687
PdmI	GAANNNNTTC	2 cut(s)	324, 1413
PfeI	GAWTC	6 cut(s)	124, 143, 1242, 1496, 1723, 1833
PflMI	CCANNNNNTGG	1 cut(s)	528
PfoI	TCCNGGA	3 cut(s)	98, 568, 1726
PkrI	GCNGC	8 cut(s)	251, 273, 304, 886, 1207, 1210, 1363, 1798
PleI	GAGTC	2 cut(s)	706, 976
PmaCI	CACGTG	1 cut(s)	1850
PmlI	CACGTG	1 cut(s)	1850
PpsI	GAGTC	2 cut(s)	706, 976
Ppu21I	YACGTR	2 cut(s)	881, 1850
PpuMI	RGGWCCY	1 cut(s)	1172
PsiI	TTATAA	1 cut(s)	989
Psp5II	RGGWCCY	1 cut(s)	1172
Psp6I	CCWGG	5 cut(s)	98, 533, 568, 908, 1726
PspCI	CACGTG	1 cut(s)	1850
PspEI	GGTNACC	1 cut(s)	1813
PspGI	CCWGG	5 cut(s)	98, 533, 568, 908, 1726
PspN4I	GGNNCC	6 cut(s)	27, 187, 693, 1043, 1173, 1861
PspPI	GGNCC	6 cut(s)	185, 230, 483, 531, 978, 1172
PspPPI	RGGWCCY	1 cut(s)	1172
PspXI	VCTCGAGB	2 cut(s)	279, 478
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	1799
RsaI	GTAC	5 cut(s)	27, 902, 1043, 1335, 1553
RsaNI	GTAC	5 cut(s)	26, 901, 1042, 1334, 1552
RseI	CAYNNNNRTG	2 cut(s)	659, 1140
Rsr2I	CGGWCCG	1 cut(s)	230
RsrII	CGGWCCG	1 cut(s)	230
SaqAI	TTAA	9 cut(s)	165, 191, 762, 1065, 1218, 1260, 1452, 1742, 1766
SatI	GCNGC	8 cut(s)	250, 272, 303, 885, 1206, 1209, 1362, 1797
Sau3AI	GATC	8 cut(s)	7, 398, 424, 595, 640, 810, 1488, 1716
Sau96I	GGNCC	6 cut(s)	185, 230, 483, 531, 978, 1172
SchI	GAGTC	2 cut(s)	707, 977
ScrFI	CCNGG	5 cut(s)	100, 535, 570, 910, 1728
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	4 cut(s)	122, 508, 1072, 1100
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	3 cut(s)	279, 478, 1682
SinI	GGWCC	3 cut(s)	185, 230, 1172
SlaI	CTCGAG	3 cut(s)	279, 478, 1682
SmiMI	CAYNNNNRTG	2 cut(s)	659, 1140
SmlI	CTYRAG	4 cut(s)	190, 279, 478, 1682
SmoI	CTYRAG	4 cut(s)	190, 279, 478, 1682
SpeI	ACTAGT	3 cut(s)	335, 823, 1226
Sse9I	AATT	9 cut(s)	81, 117, 133, 407, 744, 754, 982, 1354, 1566
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	5 cut(s)	228, 249, 271, 1506, 1593
SspMI	CTAG	5 cut(s)	336, 702, 824, 1227, 1290
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	5 cut(s)	98, 533, 568, 908, 1726
StyI	CCWWGG	1 cut(s)	1534
TaaI	ACNGT	7 cut(s)	54, 451, 945, 1130, 1148, 1556, 1709
TaiI	ACGT	2 cut(s)	883, 1852
TaqI	TCGA	6 cut(s)	122, 280, 479, 1078, 1683, 1776
TasI	AATT	9 cut(s)	81, 117, 133, 407, 744, 754, 982, 1354, 1566
TatI	WGTACW	2 cut(s)	900, 1551
TauI	GCSGC	2 cut(s)	252, 274
TfiI	GAWTC	6 cut(s)	124, 143, 1242, 1496, 1723, 1833
Tru1I	TTAA	9 cut(s)	165, 191, 762, 1065, 1218, 1260, 1452, 1742, 1766
Tru9I	TTAA	9 cut(s)	165, 191, 762, 1065, 1218, 1260, 1452, 1742, 1766
TscAI	CASTG	1 cut(s)	1153
TseFI	GTSAC	6 cut(s)	286, 945, 1088, 1142, 1300, 1813
TseI	GCWGC	6 cut(s)	302, 884, 1205, 1208, 1361, 1796
Tsp45I	GTSAC	6 cut(s)	286, 945, 1088, 1142, 1300, 1813
TspDTI	ATGAA	9 cut(s)	27, 135, 146, 165, 643, 949, 1111, 1395, 1497
TspGWI	ACGGA	3 cut(s)	121, 222, 1254
TspRI	CASTG	1 cut(s)	1153
Van91I	CCANNNNNTGG	1 cut(s)	528
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	3 cut(s)	185, 230, 1172
XapI	RAATTY	1 cut(s)	133
XbaI	TCTAGA	1 cut(s)	701
XceI	RCATGY	1 cut(s)	664
XhoI	CTCGAG	3 cut(s)	279, 478, 1682
XmnI	GAANNNNTTC	2 cut(s)	324, 1413
XspI	CTAG	5 cut(s)	336, 702, 824, 1227, 1290
Zsp2I	ATGCAT	1 cut(s)	1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.