Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

9218579 .. 9233112

Gene Structure 14534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGGCAGCTTTTGTGCCTCCTCCAGGGGCACCTAGGCCCAATAACAGTAACACTCCACCAGGGGCACCACCCCCAAATTACAACCCTAACAATGCTCAGAGAAACCCCGATTCGTTATCCGGTAACATGCAGAATTTGAATCTTAATCGCCAGCAGCCTCCTCCCATGCCCAATTCTGCTCCTAGACCATCATCATCATCATCCCCTTTTGGCCAACCGCCCCCCTTCCAGTCATCACCGCCTCCCCCGGGGGCACCTGGTGCTTCTGCGCCTTATTCTCGGCCTGGCCCTCCCCCGGCGAGACCTGCAGCACCCCGTCCACAAGCAACATTACCCCCTGGCACCGCCGCAGTAAGACCTACTGGCCCACCTGTTGGCCAGTCTTCACCGTTTGGGTCTAGACCGCCTCCTGGGGCTTTTCCTCCTGGGGTAGCTCCTACTTCTGCGCCAGCTTCCAGTCCTTTCCAGACAACGGGTTTGCCAAGTGGTCCAACGCCACCACCGCCTTCATCAGGTCCTCGCCCTGGTCCTGGGCCGTTCGCTAGTGGTCAGGCTGTGCCCCCTATGGGCGCACCGGGTAGAATGAGTAATGGGCCACCGGTCTTTGGTTCTGGGGCTGTGCCAGGTGGACCTCGTTTTCCTCCAACTGGAAATTTACCTCAACCACCTGTTGGATCTTCACCAACTTCAGTGGCTCCTCCTCGTGCTCCAACCATGCATTCGGTGCTCGGTGGTTCAGCAGTCGGTGCTCCACCAGGATCTACTGCCCAACAAGCGCCGCCATTTTCATCAGGTCCTCAAGGCATGCGGCCTCCTCCTCCTGGTTCTCCTTATAGCCCACAGTCATGGCCAATGCAACAAGGGCAGGTGGCTCAACCTCCACAATTTCCTGGGTCTGCTCCACCTCCACAATTTCCTGGCTCTGCTCCACCCCCACAATTTCCTGGCTCTTCTCCACCTCCACAATTTCCTGGCTCGGCTCAACCACCTAGAATGTATGGAATGCCACCACAACCACTGCCAAATCAGTCCATGACTACCATCTCATCGGCTGTTGGTCAAACTGGAACTCCTATGGCTGGGTCATCAAAGATTGATCCCAATCAAATTCCTCGGCCTGGACCAAGTTCTTCAGTACTTCTGCATGAAACTCGTCAGGCCAATCAAGCAAATCCACCTCCGCCTGCTACAAGTGATTATATCGTCAGAGACACTGGGAATTGCAGTCCACGTTACATGAGGTGCACCATCAATCAGATACCATGCACTGCTGATCTTTTGACAACATCAGGGATGCCGTTAGCTTTGTTGGTTGAACCTTTTGCCCTTCCTCATCCATCTGAGGAACCAATCCAAGTTGTAGATTTTGGTGAAAGTGGCCCTGTTCGATGTTCTCGTTGCAAAGGCTACATAAATCCTTTCATGAGGTTCATAGACCAGGGCAGGCAATTCATCTGCAATTTGTGTGGATTTACTGATGAGACTCCCCGCGACTACCACTGCAATCTAGGTCCAGATGGCAGACGTAGAGATGCTGATGATCGGCCTGAGCTATGTAGGGGAACAGTTGAATTTGTTGCCTCAAAAGAATACATGGTGCGTGATCCCATGCCAGCTGTGTACTTCTTCCTTATCGATGTATCCATGAATGCCATTCAAACTGGTGCAACTGCTGCAGCTTGCAGTGCAATCAATCAAGTTATTGCTGATCTTCCTGAAGGTCCTCGGACAAGGGTGGGGATAGCAACATTTGACTCGACAATCCATTTTTACAATTTGAAACGTGCACTGCAGCAGCCTTTGATGCTTATTGTTCCTGATGTACAAGATGTTTACACTCCTCTAGAGACTGATGTAGTTGTTCAGCTTTCCGAGTGCCGTCAACATTTGGAGCAATTGCTGGAAAGTATTCCAACTATGTTTCAGAATAGTAAAACTGCTGAATCAGCTTTTGGTGCAGCAATCAAGGCTGCTTTCTTGGCAATAAAGAGTACTGGAGGGAAACTTTTGGTGTTTCAGTCAGTGTTGCCATCAACTGGAATTGGAGCGCTTTCAGCTAGAGAGGCTGAAGGAAGAGCTAATATATCTTCAACTGAGAAGGAGCCCAATAAATTACTCCAGCCCGTGGACAAAACTTTGAAGACATTGGCAATTGAATTTGCTGAATATCAGGTTTGCGTCGATTTATTTATCACCACCCAGTCATACATAGATATTGCTTCTATCTCAGTCATCCCCAGAACAACCGGAGGGCAGGTTTACTATTATTATCCCTTCTCAGCTCTCTCTGATCCTGCAAAGCTATATAATGATCTTAGATGGAATGTCACAAGGCCGCAAGGTTTTGAGGCAGTGATGCGTGTAAGATGCAGCCAGGGTATTCAAGTTCAAGAGTACTTTGGAAACTTTTGCAAACGCATTCCAACAGATGTCGACCTACCTGGGATTGACTGTGACAAAACTATTATGGTAACGTTAAAGCATGATGACAAATTACAGGATGGCTCAGAATGTTCTTTCCAGTGTGCTGTTTTATACACGACTGTGTATGGCCAACGGAGAATTCGGGTTACCACTTTGTCTCTGCCATGCACTAGTATGCTAAGTAATCTGTTTCGCGCTGCTGATTTGGACACTCAGTTTTCATGTTACATGAAGCAAGCGGCAAATGAAATCACGTCAAGTCCCCTCTTGCGTGTACGGGAACAAATGACAAATCTTTGCATCAATAGTCTGCTTTCATACCGCAAATTCTGTGCTACTGTATCATCTTCGGGACAGCTTATTCTTCCAGAGGCACTGAAGCTCCTGCCTCTATACACCCTTGCATTAATCAAAAGTACCGGACTACGAACTGATGGAAAAATTGATGAGCGGTCTTTCTGGATCAACCATGTTTCCTCCCTGTCTGTACCTTTGGCAGTTCCACTGGTGTATCCCAGGATGGTGGCTGTCCATGACCTTGATGCTAAAAAGGAGGGTGATGGATCTCTTATTCCTCCGGTGATTCCACTTTCTAGCGAACACGTTCGTGATGATGGAATATATCTTCTTGAGAATGGTGAGGACTGTTTAATATACGTTGGGAACTCGGTGGATTCTGGAATTTTACAACAGTTGTTTGGCGTCACCACTGCTGATGAACTTCCTACTCAGTTTGTGCTGCAGCAGTATGATAATTCATTATCAAAGAAGCTGAATGATGTGGTAAATGAAATACGCCGCCAGAGATGTTCCTACCTGCGATTGAAATTGTGCAAGAAAGGAGATCCTTCAGGAGCATTCTTCTTATCACATTTGGTTGAAGACCAGAGTCCCCATGGCCCCTCCTATGTTGAGTTTCTGGTACATGTCCATCGGCAAATACAGATAAAAATGACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

1128

Amino Acids

120.94

Weight (kDa)

8.19

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Sec23_Sec24	PF04810	461 - 499	3.4e-16	Sec23/Sec24 zinc finger
Sec23_trunk	PF04811	536 - 776	1.1e-80	Sec23/Sec24 trunk domain
Sec23_BS	PF08033	781 - 865	1.5e-27	Sec23/Sec24 beta-sandwich domain
Sec23_helical	PF04815	876 - 974	6.6e-25	Sec23/Sec24 helical domain
Gelsolin	PF00626	1000 - 1066	2.4e-08	Gelsolin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	856
Acc36I	ACCTGC	4 cut(s)	313, 856, 2245, 3249
AccB1I	GGYRCC	4 cut(s)	28, 64, 253, 341
AccB7I	CCANNNNNTGG	4 cut(s)	374, 671, 2036, 2125
AccBSI	CCGCTC	1 cut(s)	2875
AccI	GTMKAC	1 cut(s)	2433
AccII	CGCG	2 cut(s)	1491, 2619
AclI	AACGTT	1 cut(s)	2474
AclWI	GGATC	8 cut(s)	682, 766, 1091, 1598, 2285, 2894, 2995, 3263
AcoI	YGGCCR	4 cut(s)	211, 376, 848, 2551
AcsI	RAATTY	8 cut(s)	133, 652, 1107, 1571, 2156, 2562, 2750, 3105
AcuI	CTGAAG	6 cut(s)	672, 1116, 1737, 2088, 2822, 3258
AcyI	GRCGYC	1 cut(s)	3126
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	9 cut(s)	1137, 1622, 1824, 1993, 2396, 2700, 2842, 2913, 3348
AfeI	AGCGCT	1 cut(s)	2049
AflIII	ACRYGT	2 cut(s)	3025, 3349
AgeI	ACCGGT	1 cut(s)	598
AhlI	ACTAGT	1 cut(s)	2594
AjiI	CACGTC	1 cut(s)	2679
AjuI	GAANNNNNNNTTGG	6 cut(s)	703, 735, 1935, 1967, 2547, 2579
AleI	CACNNNNGTG	2 cut(s)	2543, 3030
Alw21I	GWGCWC	5 cut(s)	709, 729, 751, 1247, 1789
Alw26I	GTCTC	5 cut(s)	295, 1203, 1475, 1841, 2586
Alw44I	GTGCAC	2 cut(s)	1243, 1785
AlwI	GGATC	8 cut(s)	682, 766, 1091, 1598, 2285, 2894, 2995, 3263
Ama87I	CYCGRG	1 cut(s)	247
Aor51HI	AGCGCT	1 cut(s)	2049
ApaLI	GTGCAC	2 cut(s)	1243, 1785
ApoI	RAATTY	8 cut(s)	133, 652, 1107, 1571, 2156, 2562, 2750, 3105
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
AseI	ATTAAT	1 cut(s)	2831
AsiGI	ACCGGT	1 cut(s)	598
Asp700I	GAANNNNTTC	2 cut(s)	1908, 3027
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	6 cut(s)	271, 448, 572, 778, 2050, 2621
AsuC2I	CCSGG	4 cut(s)	248, 249, 296, 576
AsuHPI	GGTGA	9 cut(s)	228, 378, 672, 1382, 2185, 2993, 3016, 3074, 3121
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	8 cut(s)	488, 515, 527, 629, 794, 1121, 1511, 1721
AvrII	CCTAGG	1 cut(s)	32
BaeGI	GKGCMC	6 cut(s)	31, 67, 256, 561, 1247, 1789
BaeI	ACNNNNGTAYC	2 cut(s)	2918, 2951
BalI	TGGCCA	4 cut(s)	213, 378, 850, 2553
BanI	GGYRCC	4 cut(s)	28, 64, 253, 341
BanII	GRGCYC	1 cut(s)	2106
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	3 cut(s)	375, 2147, 3312
Bbv12I	GWGCWC	5 cut(s)	709, 729, 751, 1247, 1789
BceAI	ACGGC	3 cut(s)	520, 1282, 1863
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BciVI	GTATCC	2 cut(s)	1651, 2946
BcnI	CCSGG	4 cut(s)	248, 249, 296, 576
BcoDI	GTCTC	5 cut(s)	295, 1203, 1475, 1841, 2586
BcuI	ACTAGT	1 cut(s)	2594
BfmI	CTRYAG	4 cut(s)	306, 1674, 1790, 3164
BfoI	RGCGCY	2 cut(s)	779, 2051
BfuAI	ACCTGC	4 cut(s)	313, 856, 2245, 3249
BfuI	GTATCC	2 cut(s)	1651, 2946
BlnI	CCTAGG	1 cut(s)	32
BmcAI	AGTACT	3 cut(s)	1137, 1993, 2396
Bme18I	GGWCC	8 cut(s)	488, 515, 527, 629, 794, 1121, 1511, 1721
BmeT110I	CYCGRG	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	2679
BmiI	GGNNCC	8 cut(s)	30, 66, 255, 343, 696, 1347, 2103, 3325
BmrI	ACTGGG	2 cut(s)	1224, 2194
BmsI	GCATC	7 cut(s)	1284, 1522, 1794, 2346, 2357, 2733, 2956
BmuI	ACTGGG	2 cut(s)	1224, 2194
BoxI	GACNNNNGTC	1 cut(s)	3312
BpiI	GAAGAC	3 cut(s)	375, 2147, 3312
BpmI	CTGGAG	3 cut(s)	6, 2016, 2102
Bpu10I	CCTNAGC	1 cut(s)	1548
BpuEI	CTTGAG	2 cut(s)	783, 3074
BpuMI	CCSGG	4 cut(s)	248, 249, 296, 576
Bsa29I	ATCGAT	1 cut(s)	1635
BsaBI	GATNNNNATC	1 cut(s)	1101
BsaHI	GRCGYC	1 cut(s)	3126
BsaI	GGTCTC	1 cut(s)	295
BsaWI	WCCGGW	5 cut(s)	119, 598, 2246, 2843, 3001
BsaXI	ACNNNNNCTCC	6 cut(s)	1054, 1084, 2241, 2271, 2790, 2820
Bse118I	RCCGGY	1 cut(s)	598
Bse8I	GATNNNNATC	1 cut(s)	1101
BseCI	ATCGAT	1 cut(s)	1635
BseGI	GGATG	6 cut(s)	200, 1299, 1333, 2232, 2506, 2949
BseJI	GATNNNNATC	1 cut(s)	1101
BseMII	CTCAG	9 cut(s)	110, 1332, 1539, 2085, 2241, 2292, 2520, 2651, 3167
BseRI	GAGGAG	7 cut(s)	9, 150, 687, 690, 804, 807, 1830
BseSI	GKGCMC	6 cut(s)	31, 67, 256, 561, 1247, 1789
BseYI	CCCAGC	1 cut(s)	1079
BsgI	GTGCAG	1 cut(s)	1977
Bsh1236I	CGCG	2 cut(s)	1491, 2619
BshNI	GGYRCC	4 cut(s)	28, 64, 253, 341
BshTI	ACCGGT	1 cut(s)	598
BshVI	ATCGAT	1 cut(s)	1635
BsiHKAI	GWGCWC	5 cut(s)	709, 729, 751, 1247, 1789
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	8 cut(s)	120, 248, 296, 575, 599, 2247, 2844, 3002
BslFI	GGGAC	3 cut(s)	2670, 2790, 3300
BsmAI	GTCTC	5 cut(s)	295, 1203, 1475, 1841, 2586
BsmFI	GGGAC	3 cut(s)	2670, 2790, 3300
BsmI	GAATGC	5 cut(s)	718, 1008, 1654, 2418, 3281
Bso31I	GGTCTC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	1822
Bsp19I	CCATGG	1 cut(s)	3319
BspCNI	CTCAG	9 cut(s)	109, 1333, 1540, 2086, 2240, 2291, 2519, 2650, 3166
BspDI	ATCGAT	1 cut(s)	1635
BspFNI	CGCG	2 cut(s)	1491, 2619
BspHI	TCATGA	1 cut(s)	1422
BspLI	GGNNCC	8 cut(s)	30, 66, 255, 343, 696, 1347, 2103, 3325
BspMAI	CTGCAG	4 cut(s)	310, 1678, 1794, 3168
BspMI	ACCTGC	4 cut(s)	313, 856, 2245, 3249
BspPI	GGATC	8 cut(s)	682, 766, 1091, 1598, 2285, 2894, 2995, 3263
BspQI	GCTCTTC	2 cut(s)	955, 2068
BspT107I	GGYRCC	4 cut(s)	28, 64, 253, 341
BspTNI	GGTCTC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	2875
BsrFI	RCCGGY	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	1822
BssAI	RCCGGY	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	3126
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	2 cut(s)	32, 3319
Bst2BI	CACGAG	1 cut(s)	702
Bst4CI	ACNGT	9 cut(s)	47, 390, 843, 1567, 2453, 2545, 2764, 3071, 3117
Bst6I	CTCTTC	2 cut(s)	955, 2068
BstACI	GRCGYC	1 cut(s)	3126
BstAPI	GCANNNNNTGC	4 cut(s)	260, 724, 746, 1673
BstAUI	TGTACA	1 cut(s)	1822
BstC8I	GCNNGC	8 cut(s)	152, 450, 806, 1185, 1445, 1614, 1681, 2661
BstDSI	CCRYGG	2 cut(s)	2124, 3319
BstEII	GGTNACC	1 cut(s)	2569
BstENI	CCTNNNNNAGG	2 cut(s)	21, 510
BstF5I	GGATG	6 cut(s)	200, 1299, 1333, 2232, 2506, 2949
BstFNI	CGCG	2 cut(s)	1491, 2619
BstH2I	RGCGCY	2 cut(s)	779, 2051
BstHHI	GCGC	6 cut(s)	271, 448, 572, 778, 2050, 2621
BstMAI	GTCTC	5 cut(s)	295, 1203, 1475, 1841, 2586
BstNSI	RCATGY	3 cut(s)	130, 808, 3353
BstPAI	GACNNNNGTC	1 cut(s)	3312
BstPI	GGTNACC	1 cut(s)	2569
BstSFI	CTRYAG	4 cut(s)	306, 1674, 1790, 3164
BstSLI	GKGCMC	6 cut(s)	31, 67, 256, 561, 1247, 1789
BstUI	CGCG	2 cut(s)	1491, 2619
BstV2I	GAAGAC	3 cut(s)	375, 2147, 3312
BstX2I	RGATCY	4 cut(s)	674, 758, 2987, 3268
BstXI	CCANNNNNNTGG	2 cut(s)	846, 2947
BstYI	RGATCY	4 cut(s)	674, 758, 2987, 3268
Bsu15I	ATCGAT	1 cut(s)	1635
BsuI	GTATCC	2 cut(s)	1651, 2946
BsuTUI	ATCGAT	1 cut(s)	1635
BtgI	CCRYGG	2 cut(s)	2124, 3319
BtrI	CACGTC	1 cut(s)	2679
BtsCI	GGATG	6 cut(s)	200, 1299, 1333, 2232, 2506, 2949
BtsI	GCAGTG	7 cut(s)	1016, 1266, 1498, 1690, 1787, 2358, 3132
BveI	ACCTGC	4 cut(s)	313, 856, 2245, 3249
Cac8I	GCNNGC	8 cut(s)	152, 450, 806, 1185, 1445, 1614, 1681, 2661
CciI	TCATGA	1 cut(s)	1422
CfoI	GCGC	6 cut(s)	271, 448, 572, 778, 2050, 2621
Cfr10I	RCCGGY	1 cut(s)	598
Cfr9I	CCCGGG	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	1635
CseI	GACGC	2 cut(s)	2167, 3115
CsiI	ACCWGGT	1 cut(s)	256
Csp6I	GTAC	9 cut(s)	1136, 1621, 1823, 1992, 2395, 2699, 2841, 2912, 3347
CspAI	ACCGGT	1 cut(s)	598
CspCI	CAANNNNNGTGG	4 cut(s)	672, 707, 1447, 1482
CviQI	GTAC	9 cut(s)	1136, 1621, 1823, 1992, 2395, 2699, 2841, 2912, 3347
DraIII	CACNNNGTG	1 cut(s)	260
EaeI	YGGCCR	4 cut(s)	211, 376, 848, 2551
Eam1104I	CTCTTC	2 cut(s)	955, 2068
EarI	CTCTTC	2 cut(s)	955, 2068
EciI	GGCGGA	1 cut(s)	1170
Eco130I	CCWWGG	2 cut(s)	32, 3319
Eco24I	GRGCYC	1 cut(s)	2106
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	8 cut(s)	488, 515, 527, 629, 794, 1121, 1511, 1721
Eco47III	AGCGCT	1 cut(s)	2049
Eco57I	CTGAAG	6 cut(s)	672, 1116, 1737, 2088, 2822, 3258
Eco88I	CYCGRG	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	2569
EcoNI	CCTNNNNNAGG	2 cut(s)	21, 510
EcoO109I	RGGNCCY	3 cut(s)	515, 794, 1721
EcoO65I	GGTNACC	1 cut(s)	2569
EcoRI	GAATTC	1 cut(s)	2562
EcoT14I	CCWWGG	2 cut(s)	32, 3319
EcoT22I	ATGCAT	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	2106
ErhI	CCWWGG	2 cut(s)	32, 3319
FaqI	GGGAC	3 cut(s)	2670, 2790, 3300
FauI	CCCGC	1 cut(s)	1496
FblI	GTMKAC	1 cut(s)	2433
FokI	GGATG	6 cut(s)	187, 1306, 1320, 2219, 2513, 2956
FriOI	GRGCYC	1 cut(s)	2106
GlaI	GCGC	6 cut(s)	270, 447, 571, 777, 2049, 2620
GsaI	CCCAGC	1 cut(s)	1083
GsuI	CTGGAG	3 cut(s)	6, 2016, 2102
HaeII	RGCGCY	2 cut(s)	779, 2051
HapII	CCGG	8 cut(s)	120, 248, 296, 575, 599, 2247, 2844, 3002
HgaI	GACGC	2 cut(s)	2167, 3115
HhaI	GCGC	6 cut(s)	271, 448, 572, 778, 2050, 2621
Hin1I	GRCGYC	1 cut(s)	3126
Hin6I	GCGC	6 cut(s)	269, 446, 570, 776, 2048, 2619
HinP1I	GCGC	6 cut(s)	269, 446, 570, 776, 2048, 2619
HincII	GTYRAC	2 cut(s)	1883, 2434
HindII	GTYRAC	2 cut(s)	1883, 2434
HinfI	GANTC	8 cut(s)	110, 139, 1483, 1754, 1943, 3007, 3098, 3313
HpaII	CCGG	8 cut(s)	120, 248, 296, 575, 599, 2247, 2844, 3002
HphI	GGTGA	9 cut(s)	228, 378, 672, 1382, 2185, 2993, 3016, 3074, 3121
Hpy188I	TCNGA	9 cut(s)	99, 1208, 1257, 1342, 1728, 1873, 1926, 2290, 2509
Hpy99I	CGWCG	1 cut(s)	2183
HpyAV	CCTTC	8 cut(s)	235, 516, 1337, 1712, 2063, 2092, 2284, 3282
HpyCH4III	ACNGT	9 cut(s)	47, 390, 843, 1567, 2453, 2545, 2764, 3071, 3117
HpyCH4IV	ACGT	7 cut(s)	1231, 1525, 1783, 2474, 2678, 3027, 3081
HpySE526I	ACGT	7 cut(s)	1231, 1525, 1783, 2474, 2678, 3027, 3081
Hsp92I	GRCGYC	1 cut(s)	3126
HspAI	GCGC	6 cut(s)	269, 446, 570, 776, 2048, 2619
LguI	GCTCTTC	2 cut(s)	955, 2068
LweI	GCATC	7 cut(s)	1284, 1522, 1794, 2346, 2357, 2733, 2956
MabI	ACCWGGT	1 cut(s)	256
MaeII	ACGT	7 cut(s)	1231, 1525, 1783, 2474, 2678, 3027, 3081
MaeIII	GTNAC	9 cut(s)	47, 122, 1232, 2326, 2453, 2470, 2569, 2648, 3127
MbiI	CCGCTC	1 cut(s)	2875
MfeI	CAATTG	2 cut(s)	1895, 2151
MflI	RGATCY	4 cut(s)	674, 758, 2987, 3268
MlsI	TGGCCA	4 cut(s)	213, 378, 850, 2553
MluNI	TGGCCA	4 cut(s)	213, 378, 850, 2553
MlyI	GAGTC	3 cut(s)	1477, 1748, 3322
MmeI	TCCRAC	6 cut(s)	515, 652, 668, 734, 1937, 2447
Mox20I	TGGCCA	4 cut(s)	213, 378, 850, 2553
Mph1103I	ATGCAT	1 cut(s)	720
MroXI	GAANNNNTTC	2 cut(s)	1908, 3027
MscI	TGGCCA	4 cut(s)	213, 378, 850, 2553
MseI	TTAA	4 cut(s)	144, 2477, 2831, 3074
MslI	CAYNNNNRTG	4 cut(s)	844, 2543, 2597, 3030
Msp20I	TGGCCA	4 cut(s)	213, 378, 850, 2553
MspA1I	CMGCKG	1 cut(s)	1616
MspI	CCGG	8 cut(s)	120, 248, 296, 575, 599, 2247, 2844, 3002
MunI	CAATTG	2 cut(s)	1895, 2151
Mva1269I	GAATGC	5 cut(s)	718, 1008, 1654, 2418, 3281
MvnI	CGCG	2 cut(s)	1491, 2619
NciI	CCSGG	4 cut(s)	248, 249, 296, 576
NcoI	CCATGG	1 cut(s)	3319
NlaIV	GGNNCC	8 cut(s)	30, 66, 255, 343, 696, 1347, 2103, 3325
NmeAIII	GCCGAG	3 cut(s)	259, 956, 1093
NmuCI	GTSAC	3 cut(s)	2326, 2453, 3127
NsiI	ATGCAT	1 cut(s)	720
NspI	RCATGY	3 cut(s)	130, 808, 3353
OliI	CACNNNNGTG	2 cut(s)	2543, 3030
PaeI	GCATGC	1 cut(s)	808
PagI	TCATGA	1 cut(s)	1422
PaqCI	CACCTGC	1 cut(s)	856
PciI	ACATGT	1 cut(s)	3349
PciSI	GCTCTTC	2 cut(s)	955, 2068
PcsI	WCGNNNNNNNCGW	1 cut(s)	1393
PctI	GAATGC	5 cut(s)	718, 1008, 1654, 2418, 3281
PdmI	GAANNNNTTC	2 cut(s)	1908, 3027
PfeI	GAWTC	5 cut(s)	110, 139, 1943, 3007, 3098
PflMI	CCANNNNNTGG	4 cut(s)	374, 671, 2036, 2125
PinAI	ACCGGT	1 cut(s)	598
PleI	GAGTC	3 cut(s)	1477, 1748, 3321
PpsI	GAGTC	3 cut(s)	1477, 1748, 3321
PpuMI	RGGWCCY	3 cut(s)	515, 794, 1721
PscI	ACATGT	1 cut(s)	3349
PshAI	GACNNNNGTC	1 cut(s)	3312
PshBI	ATTAAT	1 cut(s)	2831
Psp1406I	AACGTT	1 cut(s)	2474
Psp5II	RGGWCCY	3 cut(s)	515, 794, 1721
PspEI	GGTNACC	1 cut(s)	2569
PspFI	CCCAGC	1 cut(s)	1079
PspN4I	GGNNCC	8 cut(s)	30, 66, 255, 343, 696, 1347, 2103, 3325
PspPPI	RGGWCCY	3 cut(s)	515, 794, 1721
PstI	CTGCAG	4 cut(s)	310, 1678, 1794, 3168
PsuI	RGATCY	4 cut(s)	674, 758, 2987, 3268
PvuII	CAGCTG	1 cut(s)	1616
RsaI	GTAC	9 cut(s)	1137, 1622, 1824, 1993, 2396, 2700, 2842, 2913, 3348
RsaNI	GTAC	9 cut(s)	1136, 1621, 1823, 1992, 2395, 2699, 2841, 2912, 3347
RseI	CAYNNNNRTG	4 cut(s)	844, 2543, 2597, 3030
SalI	GTCGAC	1 cut(s)	2432
SapI	GCTCTTC	2 cut(s)	955, 2068
SaqAI	TTAA	4 cut(s)	144, 2477, 2831, 3074
ScaI	AGTACT	3 cut(s)	1137, 1993, 2396
SchI	GAGTC	3 cut(s)	1477, 1748, 3322
SexAI	ACCWGGT	1 cut(s)	256
SfaNI	GCATC	7 cut(s)	1284, 1522, 1794, 2346, 2357, 2733, 2956
SfcI	CTRYAG	4 cut(s)	306, 1674, 1790, 3164
SinI	GGWCC	8 cut(s)	488, 515, 527, 629, 794, 1121, 1511, 1721
SmaI	CCCGGG	1 cut(s)	249
SmiMI	CAYNNNNRTG	4 cut(s)	844, 2543, 2597, 3030
SmlI	CTYRAG	2 cut(s)	798, 3053
SmoI	CTYRAG	2 cut(s)	798, 3053
SpeI	ACTAGT	1 cut(s)	2594
SphI	GCATGC	1 cut(s)	808
StyI	CCWWGG	2 cut(s)	32, 3319
TaaI	ACNGT	9 cut(s)	47, 390, 843, 1567, 2453, 2545, 2764, 3071, 3117
TaiI	ACGT	7 cut(s)	1234, 1528, 1786, 2477, 2681, 3030, 3084
TaqI	TCGA	5 cut(s)	1387, 1635, 1757, 2181, 2433
TatI	WGTACW	5 cut(s)	1135, 1620, 1822, 1991, 2394
TauI	GCSGC	6 cut(s)	350, 781, 811, 2338, 2666, 3225
TfiI	GAWTC	5 cut(s)	110, 139, 1943, 3007, 3098
Tru1I	TTAA	4 cut(s)	144, 2477, 2831, 3074
Tru9I	TTAA	4 cut(s)	144, 2477, 2831, 3074
TseFI	GTSAC	3 cut(s)	2326, 2453, 3127
Tsp45I	GTSAC	3 cut(s)	2326, 2453, 3127
TspGWI	ACGGA	1 cut(s)	2572
TspMI	CCCGGG	1 cut(s)	247
Van91I	CCANNNNNTGG	4 cut(s)	374, 671, 2036, 2125
VneI	GTGCAC	2 cut(s)	1243, 1785
VpaK11BI	GGWCC	8 cut(s)	488, 515, 527, 629, 794, 1121, 1511, 1721
VspI	ATTAAT	1 cut(s)	2831
XagI	CCTNNNNNAGG	2 cut(s)	21, 510
XapI	RAATTY	8 cut(s)	133, 652, 1107, 1571, 2156, 2562, 2750, 3105
XbaI	TCTAGA	2 cut(s)	398, 1843
XceI	RCATGY	3 cut(s)	130, 808, 3353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3317
XmaI	CCCGGG	1 cut(s)	247
XmaJI	CCTAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	2433
XmnI	GAANNNNTTC	2 cut(s)	1908, 3027
ZrmI	AGTACT	3 cut(s)	1137, 1993, 2396
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.