Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432259.1

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Reverse (-)

453 .. 1345

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432259.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggaggaaccgatcttagattccatttgcggaagactaagacagaagacatacatccaaggaagcaaagttttgtactttggtggtctaattgaaaagatggtctttattgtgcgcggaaaaatggagagcatgggagaagatgggattagagtttccttatccgaaggggatgtttgtggtgaggagcttctctcatggtgtctcgagcattcttcggtaaataaagacggtaaaaagatcaggattcctggacagcgaatgttaagcaacaggaatgtgatatgcttaacaaatgtcgaagcattttcactaagggcagctgacattgaagaggtcaccagcctctttgccagattcttgcgcaaaccacgtgttcaaggagccataaggtatgagtcaccttactggagaggccttgcggcaagatgcattcaagtggcttggagatacaggagaaagcgcctacatcgtgcagatacttctcaatccaatcacgcctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

168

Amino Acids

19.24

Weight (kDa)

9.59

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	365
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	30, 117, 422
AcvI	CACGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	4 cut(s)	95, 332, 380, 437
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	190, 323
AluI	AGCT	2 cut(s)	190, 323
Alw26I	GTCTC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	320
AspLEI	GCGC	3 cut(s)	117, 366, 465
AsuHPI	GGTGA	3 cut(s)	194, 331, 393
AvaI	CYCGRG	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	40, 53
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	94, 137
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	2 cut(s)	321, 423
BlsI	GCNGC	2 cut(s)	322, 424
Bme1390I	CCNGG	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	9, 385
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	419
BpiI	GAAGAC	2 cut(s)	40, 53
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	54, 178
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	209
BsmI	GAATGC	2 cut(s)	211, 432
BsnI	GGCC	1 cut(s)	417
BsoBI	CYCGRG	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	12, 240
BspACI	CCGC	3 cut(s)	30, 117, 422
BspANI	GGCC	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	9, 385
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	12, 240
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	16, 38, 314
BstEII	GGTNACC	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	54, 178
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	3 cut(s)	117, 366, 465
BstKTI	GATC	2 cut(s)	15, 243
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	12, 240
BstNI	CCWGG	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	2 cut(s)	40, 53
BsuRI	GGCC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	54, 178
CfoI	GCGC	3 cut(s)	117, 366, 465
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	133, 198
CviJI	RGCY	6 cut(s)	190, 323, 345, 386, 417, 443
CviKI_1	RGCY	6 cut(s)	190, 323, 345, 386, 417, 443
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	16, 38, 314
DpnI	GATC	2 cut(s)	14, 242
DpnII	GATC	2 cut(s)	12, 240
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	417
Eco72I	CACGTG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	136, 201
FaiI	YATR	7 cut(s)	52, 134, 199, 286, 389, 396, 505
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	2 cut(s)	132, 197
Fnu4HI	GCNGC	2 cut(s)	321, 423
FokI	GGATG	2 cut(s)	41, 185
Fsp4HI	GCNGC	2 cut(s)	321, 423
FspI	TGCGCA	1 cut(s)	365
GlaI	GCGC	3 cut(s)	116, 365, 464
GluI	GCNGC	2 cut(s)	321, 423
GsuI	CTGGAG	1 cut(s)	430
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	417
HhaI	GCGC	3 cut(s)	117, 366, 465
Hin1II	CATG	2 cut(s)	136, 201
Hin6I	GCGC	3 cut(s)	115, 364, 463
HinP1I	GCGC	3 cut(s)	115, 364, 463
HinfI	GANTC	4 cut(s)	20, 247, 357, 398
HphI	GGTGA	3 cut(s)	194, 331, 393
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	206, 244
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	2 cut(s)	432, 476
HpyF3I	CTNAG	3 cut(s)	16, 38, 314
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	136, 201
HspAI	GCGC	3 cut(s)	115, 364, 463
Kzo9I	GATC	2 cut(s)	12, 240
LmnI	GCTCC	2 cut(s)	187, 383
LpnPI	CCDG	8 cut(s)	229, 237, 259, 264, 355, 367, 394, 439
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	419
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	2 cut(s)	337, 399
MalI	GATC	2 cut(s)	14, 242
MboI	GATC	2 cut(s)	12, 240
MboII	GAAGA	5 cut(s)	45, 58, 152, 207, 344
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	178, 328, 356, 407
Mph1103I	ATGCAT	1 cut(s)	434
MseI	TTAA	2 cut(s)	266, 290
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	2 cut(s)	211, 432
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	117
NdeII	GATC	2 cut(s)	12, 240
NlaIII	CATG	2 cut(s)	136, 201
NlaIV	GGNNCC	2 cut(s)	9, 385
NmuCI	GTSAC	2 cut(s)	337, 399
NsbI	TGCGCA	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	417
PctI	GAATGC	2 cut(s)	211, 432
PfeI	GAWTC	3 cut(s)	20, 247, 357
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	322, 424
PleI	GAGTC	1 cut(s)	406
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	374
PspEI	GGTNACC	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	9, 385
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	266, 290
SatI	GCNGC	2 cut(s)	321, 423
Sau3AI	GATC	2 cut(s)	12, 240
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	6 cut(s)	192, 325, 339, 376, 395, 406
SfaNI	GCATC	1 cut(s)	419
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	90
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	3 cut(s)	30, 117, 422
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	207, 300
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	20, 247, 357
Tru1I	TTAA	2 cut(s)	266, 290
Tru9I	TTAA	2 cut(s)	266, 290
TseFI	GTSAC	2 cut(s)	337, 399
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	2 cut(s)	337, 399
XhoI	CTCGAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.