Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000330.1

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Reverse (-)

17896 .. 27666

Gene Structure 9771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000330.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

atgagcttgagtctagagcgacccaaaacactatacattagattgataaacgagctcttaccccagaccaactccggtgacggcggcaacgacaaaggcaagcgggtcggatccgtctccaattccagctactccgccgtggtcatcgaggacagatcagacgtcgatgaagccgacaacatggaagggagggtgggagagagagagagagacagagagagagaaaccaacttcggcgacgacgacggcgacaaaggcaagcggctagcttcaagccttcaaccactttgcttcggaattcaggtcatctttagtttattagaaatggctgattatgaaagagatgaggtacctatgctttcggattctcatccacagtcatcaaatgagcacctgccattacaaattgagagatttatgtccaggaaacggagcgcatcaatttcgattcctatgaattctatggattcatatgaaaggggtgaagttaaccttgtaggccatactggtcccttacgaactcacacaaaaacacccttcttacctatgagtggtccgttatatgctaaccgcggcaggcctgatagtgttctgtggctaactcgaggtgtgacagggcaagaagcagcagaaactacagcagaaaagtttccttctactagtgcaacaaatgagaatgagtggaatgacgactatactgcaaaaaacgaacacttactgagatctggccaattggggatgtgcaatgatccttactgcacaacttgcccaactgtctataaggctactcaaccaaaatactcgaggccctcgggcaagttccataatgctctctatggagatgccaagggatgggccaggaggtttttctcatgtctgcgtccatacattcctggagttatgaaccctcatgctaaaattgtgcaacagtggaatcagttttttgtcatttcttgcttagtagcaatttttgtagatccattgtttttcttcctgctgtctgttcaagaggataataaatgtatagttattgatcagccatggaccactacttttgtggttttcagaagcatgactgatctcatatacttcatgcacattcttctccagtttagattggcttatgtggctcccgagtctagagtggttggtgctggagagttagttgaccatccaaagaaaattgctctcaattaccttaaaggatattttctgattgacttttttgttgtattaccacttcctcagatcatactattactagttctgccaaagaacttgggatcatctggagcaaactacgcaaaaaatcttttacgtgctgccgttcttcttcagtacattcccaggttgtgtaggtttctacctctgcttgctggacagtcaccaagtggcttcatatttgagtcagcatgggccaattttataataaatcttctcacttttgtcttatctggccacgtcgtcgggtcatgctggtacctctttggattacagagggttaatcaatgttttcgagatgcctgtcacaagactcacaactctacgattaatggatgcatgaggttcatagactgtgggcatggaagcgacagtgaaggttccaacggggatatggaactgcgtaatacctggaaaaacaatgtaaatgctattgcttgttttaaccaaactggtctcttgctttttgctcttctcataggaaatatgcagaactttctgcaggcacttggccggagaaggttagaaatgtcactgaggcgtcgtgacgttgagcagtggatgaggcatagacgtttgccagatgaattaaggaggcgagtacgacaagctgaaaggtataattgggcagctaccagaggagtaaatgaagaaatgcttttggatgtcttgcctgaagaccttcagacagatataagacgccatctcttcaagtttattaagaaggtaaggatttttgctctcatggaggaaccgatcttagattccatttgcggaagactaagacagaagacatacatccaaggaagcaaagttttgtactttggtggtctaattgaaaagatggtctttattgtgcgcggaaaaatggagagcatgggagaagatgggattagagtttccttatccgaaggggatgtttgtggtgaggagcttctctcatggtgtctcgagcattcttcggtaaataaagacggtaaaaagatcaggattcctggacagcgaatgttaagcaacaggaatgtgatatgcttaacaaatgtcgaagcattttcactaagggcagctgacattgaagaggtcaccagcctctttgccagattcttgcgcaaaccacgtgttcaaggagccataaggtatgagtcaccttactggagaggccttgcggcaagatgcattcaagtggcttggagatacaggagaaagcgcctacatcgtgcagatacttctcaatccaatcacgcctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

823

Amino Acids

93.86

Weight (kDa)

9.01

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1427
AarI	CACCTGC	1 cut(s)	402
AatII	GACGTC	1 cut(s)	165
Acc16I	TGCGCA	1 cut(s)	2330
Acc36I	ACCTGC	1 cut(s)	402
Acc65I	GGTACC	2 cut(s)	349, 1479
AccB1I	GGYRCC	2 cut(s)	349, 1479
AccB7I	CCANNNNNTGG	1 cut(s)	852
AccII	CGCG	2 cut(s)	573, 2082
AciI	CCGC	9 cut(s)	84, 103, 135, 262, 571, 573, 1995, 2082, 2387
AclWI	GGATC	5 cut(s)	105, 118, 743, 971, 1291
AcoI	YGGCCR	3 cut(s)	727, 1456, 1732
AcsI	RAATTY	2 cut(s)	297, 457
AcuI	CTGAAG	3 cut(s)	1319, 1889, 1917
AcvI	CACGTG	1 cut(s)	2339
AcyI	GRCGYC	3 cut(s)	162, 1762, 1921
AdeI	CACNNNGTG	1 cut(s)	1391
AfaI	GTAC	5 cut(s)	351, 1340, 1481, 1824, 2042
AfiI	CCNNNNNNNGG	3 cut(s)	429, 551, 852
AflIII	ACRYGT	1 cut(s)	2338
AgsI	TTSAA	8 cut(s)	273, 281, 1007, 1933, 2060, 2297, 2345, 2402
AhlI	ACTAGT	2 cut(s)	659, 1261
AjiI	CACGTC	1 cut(s)	1462
AjnI	CCWGG	6 cut(s)	422, 857, 892, 1346, 1631, 2215
AluBI	AGCT	8 cut(s)	6, 55, 129, 269, 1832, 1853, 2155, 2288
AluI	AGCT	8 cut(s)	6, 55, 129, 269, 1832, 1853, 2155, 2288
Alw21I	GWGCWC	2 cut(s)	57, 393
Alw26I	GTCTC	4 cut(s)	121, 204, 1682, 2174
AlwI	GGATC	5 cut(s)	105, 118, 743, 971, 1291
Ama87I	CYCGRG	5 cut(s)	603, 802, 811, 1133, 2171
AoxI	GGCC	9 cut(s)	499, 578, 727, 806, 855, 1416, 1456, 1732, 2380
ApeKI	GCWGC	4 cut(s)	626, 1322, 1850, 2285
ApoI	RAATTY	2 cut(s)	297, 457
AseI	ATTAAT	1 cut(s)	1551
Asp700I	GAANNNNTTC	2 cut(s)	648, 1902
Asp718I	GGTACC	2 cut(s)	349, 1479
AspLEI	GCGC	4 cut(s)	437, 2082, 2331, 2430
AspS9I	GGNCC	6 cut(s)	509, 554, 807, 855, 1044, 1416
AsuHPI	GGTGA	6 cut(s)	89, 494, 1377, 2159, 2296, 2358
AsuNHI	GCTAGC	1 cut(s)	265
AvaI	CYCGRG	5 cut(s)	603, 802, 811, 1133, 2171
AvaII	GGWCC	3 cut(s)	509, 554, 1044
BalI	TGGCCA	2 cut(s)	729, 1458
BamHI	GGATCC	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	349, 1479
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	1224, 1256
BbrPI	CACGTG	1 cut(s)	2339
BbsI	GAAGAC	3 cut(s)	1905, 2005, 2018
Bbv12I	GWGCWC	2 cut(s)	57, 393
BbvI	GCAGC	4 cut(s)	638, 1309, 1862, 2297
BccI	CCATC	5 cut(s)	846, 1179, 1932, 2059, 2102
BceAI	ACGGC	4 cut(s)	97, 122, 262, 1310
BcgI	CGANNNNNNTGC	6 cut(s)	88, 122, 426, 460, 680, 714
BciT130I	CCWGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
BclI	TGATCA	1 cut(s)	1033
BcoDI	GTCTC	4 cut(s)	121, 204, 1682, 2174
BcuI	ACTAGT	2 cut(s)	659, 1261
BfaI	CTAG	5 cut(s)	14, 266, 660, 1140, 1262
BfmI	CTRYAG	2 cut(s)	636, 1721
BfoI	RGCGCY	1 cut(s)	2431
BfuAI	ACCTGC	1 cut(s)	402
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	8 cut(s)	85, 263, 574, 627, 1323, 1851, 2286, 2388
BlsI	GCNGC	8 cut(s)	86, 264, 575, 628, 1324, 1852, 2287, 2389
Bme1390I	CCNGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
Bme18I	GGWCC	3 cut(s)	509, 554, 1044
BmeT110I	CYCGRG	5 cut(s)	603, 802, 811, 1133, 2171
BmgBI	CACGTC	1 cut(s)	1462
BmgT120I	GGNCC	6 cut(s)	509, 554, 807, 855, 1044, 1416
BmiI	GGNNCC	8 cut(s)	112, 351, 511, 1131, 1481, 1603, 1974, 2350
BmrFI	CCNGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
BmsI	GCATC	5 cut(s)	446, 832, 1510, 1547, 2384
BmtI	GCTAGC	1 cut(s)	269
BpiI	GAAGAC	3 cut(s)	1905, 2005, 2018
BplI	GAGNNNNNCTC	2 cut(s)	2144, 2176
BpmI	CTGGAG	5 cut(s)	915, 1091, 1176, 1311, 2395
BpuEI	CTTGAG	1 cut(s)	28
BsaAI	YACGTR	2 cut(s)	1319, 2339
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	3 cut(s)	162, 1762, 1921
BsaI	GGTCTC	1 cut(s)	1682
BsaJI	CCNNGG	7 cut(s)	138, 571, 810, 846, 1040, 1346, 2023
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	1149, 1179
Bsc4I	CCNNNNNNNGG	3 cut(s)	429, 551, 852
Bse1I	ACTGG	4 cut(s)	511, 1108, 1678, 2378
Bse3DI	GCAATG	1 cut(s)	751
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
BseDI	CCNNGG	7 cut(s)	138, 571, 810, 846, 1040, 1346, 2023
BseGI	GGATG	9 cut(s)	370, 744, 857, 1171, 1562, 1788, 1891, 2019, 2143
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	429, 551, 852
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	3 cut(s)	710, 1259, 1748
BseNI	ACTGG	4 cut(s)	511, 1108, 1678, 2378
BseRI	GAGGAG	2 cut(s)	1875, 2165
BseXI	GCAGC	4 cut(s)	638, 1309, 1862, 2297
BsgI	GTGCAG	2 cut(s)	742, 2460
Bsh1236I	CGCG	2 cut(s)	573, 2082
BshFI	GGCC	9 cut(s)	501, 580, 729, 808, 857, 1418, 1458, 1734, 2382
BshNI	GGYRCC	2 cut(s)	349, 1479
BsiHKAI	GWGCWC	2 cut(s)	57, 393
BsiHKCI	CYCGRG	5 cut(s)	603, 802, 811, 1133, 2171
BsiSI	CCGG	2 cut(s)	75, 1735
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	429, 551, 852
BsmAI	GTCTC	4 cut(s)	121, 204, 1682, 2174
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	495
BsmI	GAATGC	2 cut(s)	2176, 2397
BsnI	GGCC	9 cut(s)	501, 580, 729, 808, 857, 1418, 1458, 1734, 2382
Bso31I	GGTCTC	1 cut(s)	1682
BsoBI	CYCGRG	5 cut(s)	603, 802, 811, 1133, 2171
Bsp1286I	GDGCHC	2 cut(s)	57, 393
Bsp19I	CCATGG	1 cut(s)	1040
BspACI	CCGC	9 cut(s)	84, 103, 135, 262, 571, 573, 1995, 2082, 2387
BspANI	GGCC	9 cut(s)	501, 580, 729, 808, 857, 1418, 1458, 1734, 2382
BspCNI	CTCAG	3 cut(s)	711, 1258, 1749
BspFNI	CGCG	2 cut(s)	573, 2082
BspLI	GGNNCC	8 cut(s)	112, 351, 511, 1131, 1481, 1603, 1974, 2350
BspMAI	CTGCAG	1 cut(s)	1725
BspMI	ACCTGC	1 cut(s)	402
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	5 cut(s)	105, 118, 743, 971, 1291
BspQI	GCTCTTC	1 cut(s)	1698
BspT107I	GGYRCC	2 cut(s)	349, 1479
BspTNI	GGTCTC	1 cut(s)	1682
BsrDI	GCAATG	1 cut(s)	751
BsrI	ACTGG	4 cut(s)	511, 1108, 1678, 2378
BssECI	CCNNGG	7 cut(s)	138, 571, 810, 846, 1040, 1346, 2023
BssNI	GRCGYC	3 cut(s)	162, 1762, 1921
BssT1I	CCWWGG	3 cut(s)	846, 1040, 2023
Bst2UI	CCWGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
Bst4CI	ACNGT	7 cut(s)	378, 775, 930, 1383, 1577, 1595, 2198
Bst6I	CTCTTC	3 cut(s)	1698, 1934, 2292
BstACI	GRCGYC	3 cut(s)	162, 1762, 1921
BstAPI	GCANNNNNTGC	1 cut(s)	765
BstBAI	YACGTR	2 cut(s)	1319, 2339
BstC8I	GCNNGC	6 cut(s)	101, 260, 267, 578, 1374, 1725
BstDEI	CTNAG	7 cut(s)	719, 958, 1245, 1757, 1981, 2003, 2279
BstDSI	CCRYGG	3 cut(s)	138, 571, 1040
BstEII	GGTNACC	1 cut(s)	2302
BstF5I	GGATG	9 cut(s)	370, 744, 857, 1171, 1562, 1788, 1891, 2019, 2143
BstFNI	CGCG	2 cut(s)	573, 2082
BstH2I	RGCGCY	1 cut(s)	2431
BstHHI	GCGC	4 cut(s)	437, 2082, 2331, 2430
BstMAI	GTCTC	4 cut(s)	121, 204, 1682, 2174
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 765, 1127, 1301
BstNI	CCWGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
BstPI	GGTNACC	1 cut(s)	2302
BstSCI	CCNGG	6 cut(s)	422, 857, 892, 1346, 1631, 2215
BstSFI	CTRYAG	2 cut(s)	636, 1721
BstUI	CGCG	2 cut(s)	573, 2082
BstV1I	GCAGC	4 cut(s)	638, 1309, 1862, 2297
BstV2I	GAAGAC	3 cut(s)	1905, 2005, 2018
BstX2I	RGATCY	3 cut(s)	110, 722, 976
BstYI	RGATCY	3 cut(s)	110, 722, 976
BsuRI	GGCC	9 cut(s)	501, 580, 729, 808, 857, 1418, 1458, 1734, 2382
BtgI	CCRYGG	3 cut(s)	138, 571, 1040
BtrI	CACGTC	1 cut(s)	1462
BtsCI	GGATG	9 cut(s)	370, 744, 857, 1171, 1562, 1788, 1891, 2019, 2143
BtsI	GCAGTG	1 cut(s)	1784
BtsIMutI	CAGTG	4 cut(s)	935, 1600, 1754, 1784
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	6 cut(s)	101, 260, 267, 578, 1374, 1725
CfoI	GCGC	4 cut(s)	437, 2082, 2331, 2430
Cfr13I	GGNCC	6 cut(s)	509, 554, 807, 855, 1044, 1416
Cfr42I	CCGCGG	1 cut(s)	574
CseI	GACGC	3 cut(s)	869, 1751, 1929
Csp6I	GTAC	5 cut(s)	350, 1339, 1480, 1823, 2041
CspCI	CAANNNNNGTGG	2 cut(s)	1036, 1071
CviQI	GTAC	5 cut(s)	350, 1339, 1480, 1823, 2041
DdeI	CTNAG	7 cut(s)	719, 958, 1245, 1757, 1981, 2003, 2279
DraIII	CACNNNGTG	1 cut(s)	1391
EaeI	YGGCCR	3 cut(s)	727, 1456, 1732
Eam1104I	CTCTTC	3 cut(s)	1698, 1934, 2292
EarI	CTCTTC	3 cut(s)	1698, 1934, 2292
EciI	GGCGGA	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	3 cut(s)	846, 1040, 2023
Eco147I	AGGCCT	2 cut(s)	580, 2382
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	1682
Eco47I	GGWCC	3 cut(s)	509, 554, 1044
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	1319, 1889, 1917
Eco72I	CACGTG	1 cut(s)	2339
Eco88I	CYCGRG	5 cut(s)	603, 802, 811, 1133, 2171
Eco91I	GGTNACC	1 cut(s)	2302
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	807
EcoO65I	GGTNACC	1 cut(s)	2302
EcoRI	GAATTC	2 cut(s)	297, 457
EcoRII	CCWGG	6 cut(s)	422, 857, 892, 1346, 1631, 2215
EcoT14I	CCWWGG	3 cut(s)	846, 1040, 2023
EcoT22I	ATGCAT	2 cut(s)	1562, 2399
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	3 cut(s)	846, 1040, 2023
Esp3I	CGTCTC	1 cut(s)	121
FalI	AAGNNNNNCTT	6 cut(s)	477, 509, 1863, 1895, 2054, 2086
FaqI	GGGAC	1 cut(s)	495
FauI	CCCGC	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	1033
Fnu4HI	GCNGC	8 cut(s)	85, 263, 574, 627, 1323, 1851, 2286, 2388
FokI	GGATG	9 cut(s)	357, 751, 864, 1158, 1569, 1795, 1898, 2006, 2150
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	8 cut(s)	85, 263, 574, 627, 1323, 1851, 2286, 2388
FspBI	CTAG	5 cut(s)	14, 266, 660, 1140, 1262
FspI	TGCGCA	1 cut(s)	2330
GlaI	GCGC	4 cut(s)	436, 2081, 2330, 2429
GluI	GCNGC	8 cut(s)	85, 263, 574, 627, 1323, 1851, 2286, 2388
GsuI	CTGGAG	5 cut(s)	915, 1091, 1176, 1311, 2395
HaeII	RGCGCY	1 cut(s)	2431
HaeIII	GGCC	9 cut(s)	501, 580, 729, 808, 857, 1418, 1458, 1734, 2382
HapII	CCGG	2 cut(s)	75, 1735
HgaI	GACGC	3 cut(s)	869, 1751, 1929
HhaI	GCGC	4 cut(s)	437, 2082, 2331, 2430
Hin1I	GRCGYC	3 cut(s)	162, 1762, 1921
Hin6I	GCGC	4 cut(s)	435, 2080, 2329, 2428
HinP1I	GCGC	4 cut(s)	435, 2080, 2329, 2428
HincII	GTYRAC	2 cut(s)	490, 1168
HindII	GTYRAC	2 cut(s)	490, 1168
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	75, 1735
HphI	GGTGA	6 cut(s)	89, 494, 1377, 2159, 2296, 2358
Hpy166II	GTNNAC	2 cut(s)	490, 1168
Hpy188I	TCNGA	9 cut(s)	110, 160, 296, 364, 1067, 1215, 1248, 1908, 2131
Hpy188III	TCNNGA	9 cut(s)	14, 1007, 1133, 1140, 1290, 1517, 1766, 2171, 2209
Hpy8I	GTNNAC	2 cut(s)	490, 1168
Hpy99I	CGWCG	7 cut(s)	167, 242, 245, 248, 1466, 1469, 1767
HpyAV	CCTTC	9 cut(s)	179, 287, 547, 663, 1592, 1734, 1913, 1939, 2126
HpyCH4III	ACNGT	7 cut(s)	378, 775, 930, 1383, 1577, 1595, 2198
HpyCH4IV	ACGT	6 cut(s)	162, 1318, 1461, 1770, 1795, 2338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 765, 1127, 1301
HpyF3I	CTNAG	7 cut(s)	719, 958, 1245, 1757, 1981, 2003, 2279
HpySE526I	ACGT	6 cut(s)	162, 1318, 1461, 1770, 1795, 2338
Hsp92I	GRCGYC	3 cut(s)	162, 1762, 1921
HspAI	GCGC	4 cut(s)	435, 2080, 2329, 2428
KpnI	GGTACC	2 cut(s)	353, 1483
Ksp22I	TGATCA	1 cut(s)	1033
KspAI	GTTAAC	1 cut(s)	490
KspI	CCGCGG	1 cut(s)	574
LguI	GCTCTTC	1 cut(s)	1698
LmnI	GCTCC	5 cut(s)	432, 1135, 1292, 2152, 2348
Lsp1109I	GCAGC	4 cut(s)	638, 1309, 1862, 2297
LweI	GCATC	5 cut(s)	446, 832, 1510, 1547, 2384
MaeI	CTAG	5 cut(s)	14, 266, 660, 1140, 1262
MaeII	ACGT	6 cut(s)	162, 1318, 1461, 1770, 1795, 2338
MaeIII	GTNAC	8 cut(s)	77, 610, 1383, 1526, 1752, 1766, 2302, 2364
MfeI	CAATTG	1 cut(s)	731
MflI	RGATCY	3 cut(s)	110, 722, 976
MhlI	GDGCHC	2 cut(s)	57, 393
MlsI	TGGCCA	2 cut(s)	729, 1458
MluNI	TGGCCA	2 cut(s)	729, 1458
MlyI	GAGTC	5 cut(s)	19, 1145, 1415, 1528, 2372
MmeI	TCCRAC	2 cut(s)	88, 1629
Mox20I	TGGCCA	2 cut(s)	729, 1458
Mph1103I	ATGCAT	2 cut(s)	1562, 2399
MroXI	GAANNNNTTC	2 cut(s)	648, 1902
MscI	TGGCCA	2 cut(s)	729, 1458
MseI	TTAA	9 cut(s)	489, 1200, 1503, 1551, 1665, 1811, 1941, 2231, 2255
MslI	CAYNNNNRTG	1 cut(s)	2402
Msp20I	TGGCCA	2 cut(s)	729, 1458
MspA1I	CMGCKG	2 cut(s)	573, 2288
MspI	CCGG	2 cut(s)	75, 1735
MspR9I	CCNGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
MunI	CAATTG	1 cut(s)	731
Mva1269I	GAATGC	2 cut(s)	2176, 2397
MvaI	CCWGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
MvnI	CGCG	2 cut(s)	573, 2082
MwoI	GCNNNNNNNGC	4 cut(s)	255, 765, 1127, 1301
NcoI	CCATGG	1 cut(s)	1040
NdeI	CATATG	1 cut(s)	472
NheI	GCTAGC	1 cut(s)	265
NlaIV	GGNNCC	8 cut(s)	112, 351, 511, 1131, 1481, 1603, 1974, 2350
NmuCI	GTSAC	8 cut(s)	77, 610, 1383, 1526, 1752, 1766, 2302, 2364
NsbI	TGCGCA	1 cut(s)	2330
NsiI	ATGCAT	2 cut(s)	1562, 2399
PaeR7I	CTCGAG	3 cut(s)	603, 802, 2171
PaqCI	CACCTGC	1 cut(s)	402
PceI	AGGCCT	2 cut(s)	580, 2382
PciSI	GCTCTTC	1 cut(s)	1698
PcsI	WCGNNNNNNNCGW	4 cut(s)	87, 171, 240, 246
PctI	GAATGC	2 cut(s)	2176, 2397
PdmI	GAANNNNTTC	2 cut(s)	648, 1902
PfeI	GAWTC	7 cut(s)	365, 448, 467, 934, 1985, 2212, 2322
PflMI	CCANNNNNTGG	1 cut(s)	852
PfoI	TCCNGGA	3 cut(s)	422, 892, 2215
PkrI	GCNGC	8 cut(s)	86, 264, 575, 628, 1324, 1852, 2287, 2389
PleI	GAGTC	5 cut(s)	18, 1144, 1414, 1528, 2371
PmaCI	CACGTG	1 cut(s)	2339
PmlI	CACGTG	1 cut(s)	2339
PpsI	GAGTC	5 cut(s)	18, 1144, 1414, 1528, 2371
Ppu21I	YACGTR	2 cut(s)	1319, 2339
PshBI	ATTAAT	1 cut(s)	1551
PsiI	TTATAA	1 cut(s)	1427
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	6 cut(s)	422, 857, 892, 1346, 1631, 2215
PspCI	CACGTG	1 cut(s)	2339
PspEI	GGTNACC	1 cut(s)	2302
PspGI	CCWGG	6 cut(s)	422, 857, 892, 1346, 1631, 2215
PspN4I	GGNNCC	8 cut(s)	112, 351, 511, 1131, 1481, 1603, 1974, 2350
PspPI	GGNCC	6 cut(s)	509, 554, 807, 855, 1044, 1416
PspXI	VCTCGAGB	2 cut(s)	603, 802
PstI	CTGCAG	1 cut(s)	1725
PsuI	RGATCY	3 cut(s)	110, 722, 976
PvuII	CAGCTG	1 cut(s)	2288
RsaI	GTAC	5 cut(s)	351, 1340, 1481, 1824, 2042
RsaNI	GTAC	5 cut(s)	350, 1339, 1480, 1823, 2041
RseI	CAYNNNNRTG	1 cut(s)	2402
SacI	GAGCTC	1 cut(s)	57
SacII	CCGCGG	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	1698
SaqAI	TTAA	9 cut(s)	489, 1200, 1503, 1551, 1665, 1811, 1941, 2231, 2255
SatI	GCNGC	8 cut(s)	85, 263, 574, 627, 1323, 1851, 2286, 2388
Sau96I	GGNCC	6 cut(s)	509, 554, 807, 855, 1044, 1416
SchI	GAGTC	5 cut(s)	19, 1145, 1415, 1528, 2372
ScrFI	CCNGG	6 cut(s)	424, 859, 894, 1348, 1633, 2217
SduI	GDGCHC	2 cut(s)	57, 393
SfaNI	GCATC	5 cut(s)	446, 832, 1510, 1547, 2384
SfcI	CTRYAG	2 cut(s)	636, 1721
Sfr274I	CTCGAG	3 cut(s)	603, 802, 2171
Sfr303I	CCGCGG	1 cut(s)	574
SgrBI	CCGCGG	1 cut(s)	574
SinI	GGWCC	3 cut(s)	509, 554, 1044
SlaI	CTCGAG	3 cut(s)	603, 802, 2171
SmiMI	CAYNNNNRTG	1 cut(s)	2402
SmlI	CTYRAG	4 cut(s)	7, 603, 802, 2171
SmoI	CTYRAG	4 cut(s)	7, 603, 802, 2171
SpeI	ACTAGT	2 cut(s)	659, 1261
SseBI	AGGCCT	2 cut(s)	580, 2382
SsiI	CCGC	9 cut(s)	84, 103, 135, 262, 571, 573, 1995, 2082, 2387
SspMI	CTAG	5 cut(s)	14, 266, 660, 1140, 1262
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	2 cut(s)	580, 2382
StyD4I	CCNGG	6 cut(s)	422, 857, 892, 1346, 1631, 2215
StyI	CCWWGG	3 cut(s)	846, 1040, 2023
TaaI	ACNGT	7 cut(s)	378, 775, 930, 1383, 1577, 1595, 2198
TaiI	ACGT	6 cut(s)	165, 1321, 1464, 1773, 1798, 2341
TaqI	TCGA	8 cut(s)	147, 165, 446, 604, 803, 1516, 2172, 2265
TatI	WGTACW	2 cut(s)	1338, 2040
TauI	GCSGC	4 cut(s)	87, 265, 576, 2390
TfiI	GAWTC	7 cut(s)	365, 448, 467, 934, 1985, 2212, 2322
Tru1I	TTAA	9 cut(s)	489, 1200, 1503, 1551, 1665, 1811, 1941, 2231, 2255
Tru9I	TTAA	9 cut(s)	489, 1200, 1503, 1551, 1665, 1811, 1941, 2231, 2255
TscAI	CASTG	4 cut(s)	935, 1600, 1761, 1784
TseFI	GTSAC	8 cut(s)	77, 610, 1383, 1526, 1752, 1766, 2302, 2364
TseI	GCWGC	4 cut(s)	626, 1322, 1850, 2285
Tsp45I	GTSAC	8 cut(s)	77, 610, 1383, 1526, 1752, 1766, 2302, 2364
TspGWI	ACGGA	3 cut(s)	103, 445, 546
TspRI	CASTG	4 cut(s)	935, 1600, 1761, 1784
Van91I	CCANNNNNTGG	1 cut(s)	852
VpaK11BI	GGWCC	3 cut(s)	509, 554, 1044
VspI	ATTAAT	1 cut(s)	1551
XapI	RAATTY	2 cut(s)	297, 457
XbaI	TCTAGA	2 cut(s)	13, 1139
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1054, 1612
XhoI	CTCGAG	3 cut(s)	603, 802, 2171
XmnI	GAANNNNTTC	2 cut(s)	648, 1902
XspI	CTAG	5 cut(s)	14, 266, 660, 1140, 1262
ZraI	GACGTC	1 cut(s)	163
Zsp2I	ATGCAT	2 cut(s)	1562, 2399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.