RchiOBHm_Chr5g0083381

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000678
Physical Location & Seq
Reverse (-)
89027979 .. 89028664
686 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35753

Sequence Viewer

Length: 237 bp
ATGCTAGTACCTCCTTGGCTTACAGAGTCAACTAAATGGAGAGAAAATGAGGAGGTTGCTGGTTGTTTTAATCCGGAAGGAGATTTCTCCTATGGAGTATATACTCCAGTTGTCAATCTCACTACAAGAGATAGCATGACTAAATATTTATACTCACTGTTTTGGGGATTCCAGGTACCTTACATTATATCTTTAATTGTTTATAATAGAAATATGTTTAGCTGTTTGTATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

78

Amino Acids

9.18

Weight (kDa)

4.77

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 73
AfaI GTAC 2 cut(s) 9, 177
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Aor13HI TCCGGA 1 cut(s) 73
Asp718I GGTACC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 5
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 159
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 155
Csp6I GTAC 2 cut(s) 8, 176
CviAII CATG 1 cut(s) 136
CviJI RGCY 2 cut(s) 19, 222
CviKI_1 RGCY 2 cut(s) 19, 222
CviQI GTAC 2 cut(s) 8, 176
Eco130I CCWWGG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 1 cut(s) 139
FaiI YATR 9 cut(s) 93, 100, 102, 137, 151, 188, 204, 215, 231
FatI CATG 1 cut(s) 135
FspBI CTAG 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 90
HapII CCGG 1 cut(s) 74
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 26, 168
HpaII CCGG 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 159
Hsp92II CATG 1 cut(s) 139
Kpn2I TCCGGA 1 cut(s) 73
KpnI GGTACC 1 cut(s) 179
LpnPI CCDG 5 cut(s) 45, 87, 120, 158, 185
MaeI CTAG 1 cut(s) 5
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 3 cut(s) 21, 43, 46
MroI TCCGGA 1 cut(s) 73
MseI TTAA 3 cut(s) 69, 194, 235
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 168
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PsiI TTATAA 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 177
RsaI GTAC 2 cut(s) 9, 177
RsaNI GTAC 2 cut(s) 8, 176
SaqAI TTAA 3 cut(s) 69, 194, 235
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 173
SetI ASST 5 cut(s) 13, 57, 177, 181, 224
SgeI CNNG 9 cut(s) 17, 27, 72, 86, 119, 138, 148, 184, 185
Sse9I AATT 1 cut(s) 195
SspI AATATT 1 cut(s) 146
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 159
TasI AATT 1 cut(s) 195
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 3 cut(s) 69, 194, 235
Tru9I TTAA 3 cut(s) 69, 194, 235
TscAI CASTG 1 cut(s) 162
TspRI CASTG 1 cut(s) 162
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.