Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

44463226 .. 44463649

Gene Structure 424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25211

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGTCTTCAATGCTGCTGCTATAGTTATTCAAGATTTTGATGCAGTAGTGAACAAGGGATTCTTCCATGGATACTTGTTTATAACCGTTCTCATGATTCTGAACCAAGCACCAAGTGGCATTGTTGTGTCTATGGTAATGAAGTATGCTGACAATGTTGTAAAGGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

57

Amino Acids

6.31

Weight (kDa)

8.16

Isoelectric Point (pI)

18.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	3 - 55	1e-12	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	10, 32
ApeKI	GCWGC	2 cut(s)	14, 17
BbvI	GCAGC	1 cut(s)	4
BciVI	GTATCC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	15, 18
BlsI	GCNGC	2 cut(s)	16, 19
BmsI	GCATC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	93
CviAII	CATG	2 cut(s)	68, 94
DraIII	CACNNNGTG	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	71, 97
FaiI	YATR	6 cut(s)	23, 69, 83, 95, 134, 147
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	2 cut(s)	67, 93
Fnu4HI	GCNGC	2 cut(s)	15, 18
Fsp4HI	GCNGC	2 cut(s)	15, 18
GluI	GCNGC	2 cut(s)	15, 18
Hin1II	CATG	2 cut(s)	71, 97
HinfI	GANTC	2 cut(s)	60, 97
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	32, 94
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	71, 97
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	55
MslI	CAYNNNNRTG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	67
NlaIII	CATG	2 cut(s)	71, 97
PagI	TCATGA	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	60, 97
PkrI	GCNGC	2 cut(s)	16, 19
PsiI	TTATAA	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	2 cut(s)	15, 18
SetI	ASST	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	21
SgeI	CNNG	7 cut(s)	44, 67, 80, 88, 106, 119, 126
SmiMI	CAYNNNNRTG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	60, 97
TseI	GCWGC	2 cut(s)	14, 17
TspDTI	ATGAA	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.