Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Reverse (-)

444686 .. 453659

Gene Structure 8974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGGCTGATTATGAAAGAGATGAGGTACCTATGCTTTCGGATACTCATCCACAGTCATCAAATGAGCACCTGCCATTACAAATTGAGAGATTTACGTCCAGGAAACGGAGCGCATCAATTTCAATTCCTATGAATTCTATGGATTCATATGAAAGGGGTGAAGTTAACCTTGTAGGCCATACTGGTCCCTTAAGAACTCACACAAAAACACCCTTCTTACCTATGAGTGGTCCGTTATATGCTAACCGCGGCAGGCCTGATAGTGTTCTGTGGCTAACTCGAGGTGTGACAGGGCAAGAAGCAGCAGAAACTACAGCAGAAAAGTTTCCTTCTACTAGTGCAACAAATGAGAATGAGTGGAATGACGACTATACTGCAAAAAACGAACACTTACTGAGATCTGGCCAATTGGGGATGTGCAATGATCCTTACTGCACAACTTGCCCAACTGTCTATAAGGCTACTCAACCAAAATACTCGAGGCCCTCAGGCAAGTTCCATAATGCTCTCTATGGGGATGCCAAGGGATGGGCCAGGAGGTTTTTCTCATGTCTGCGTCCATACATTCCTGGAGTTATGAACCCTCATGCTAAAATTGTGCAACAGTGGAATCAGTTTTTTGTCATTTCTTGCTTAGTAGCAATTTTTGTAGATCCATTGTTTTTCTTCCTGCTGTCTGTTCAAGAGGATAATAAATGTATAGTTATTGATCAGCCATGGACCACTACTTTTGTGGTTTTCAGAAGCATGACTGATCTCATATACTTCATGCACATTCTTCTCCAGTTTAGATTGGCTTATGTGGCTCCCGAGTCTAGAGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCTCTCAATTACCTTAAAGGATATTTTCTGATTGACTTTTTTGTTGTATTACCACTTCCTCAGATCATACTATTACTAGTTCTGCCAAAGAACTTAGGATCATCTGGAGCAAACTACGCAAAAAATCTTTTACGTGCTGCCGTTCTTCTTCAGTACATTCCCAGGTTGTGTAGGTTTCTACCTCTGCTTGCTGGACAGTCACCAAGTGGCTTCATATTTGAGTCAGCATGGGCCAATTTTATAATAAATCTTCTCACTTTTGTCTTATCTGGCCACGTTGTCGGGTCATGCTGGTACCTCTTTGGATTACAGAGGGTTAATCAATGTTTTCGAGATGCCTGTCACAAGACTCACAACTCTACGATTAATGGATGCATGAGGTTCATAGACTGTGGGCATGGAAGCGACAGTGAAGGTTCCAACGGGGATATGGAACTGCGTAATACATGGAAAAACAATGTAAATGCTATTGCTTGTTTTAACCAAACTGGTTTTGACTACGGAATCTACGCCCAAGCTGTTGGCCTTACGACAGAAAATAGCATAATCACTAGATATGTATATGCATTGTTTTGGGGATTTCAGCAAATCAGTACTCTGGCTGGAAACCAAGTTCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACAATGGCCATTATTGGCCTAGGTCTCTTGCTTTTTGCTCTTCTCATAGGAAATATGCAGAACTTTCTGCAGGCACTTGACCGGAGAAGGTTAGAAATGTCACTGAGACGTCGTGACGTTGAGCAGTGGATGAGGCATAGACGTTTGCCAGATGAATTAAGGAGGCGAGTACGACAAGCTGAAAGGTATAATTGGGCAGCTACCAGAGGAGTAAATGAAGAAATGCTTTTGGATGTCTTGCCTGAAGACCTTCAGACAGATATAAGACGCCATCTCTTCAAGTTTATTAAGAAGGTGATCATCTTAGAATCTGTTGTCATTATATTGCATGTATATACTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

616

Amino Acids

70.46

Weight (kDa)

8.73

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	204 - 531	9.3e-19	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1103
AarI	CACCTGC	1 cut(s)	78
AatII	GACGTC	1 cut(s)	1618
Acc36I	ACCTGC	1 cut(s)	78
Acc65I	GGTACC	2 cut(s)	25, 1155
AccB1I	GGYRCC	2 cut(s)	25, 1155
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	247, 249
AclWI	GGATC	3 cut(s)	419, 647, 967
AcoI	YGGCCR	3 cut(s)	403, 1132, 1512
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	3 cut(s)	995, 1742, 1770
AcyI	GRCGYC	2 cut(s)	1615, 1774
AdeI	CACNNNGTG	1 cut(s)	1067
AfaI	GTAC	5 cut(s)	27, 1016, 1157, 1456, 1677
AfiI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	123, 683, 1786
AhlI	ACTAGT	2 cut(s)	335, 937
AjnI	CCWGG	4 cut(s)	98, 533, 568, 1022
AloI	GAACNNNNNNTCC	2 cut(s)	1458, 1490
AluBI	AGCT	4 cut(s)	1379, 1482, 1685, 1706
AluI	AGCT	4 cut(s)	1379, 1482, 1685, 1706
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	1535, 1606
AlwI	GGATC	3 cut(s)	419, 647, 967
Ama87I	CYCGRG	3 cut(s)	279, 478, 809
ApeKI	GCWGC	3 cut(s)	302, 998, 1703
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	1227
Asp700I	GAANNNNTTC	2 cut(s)	324, 1755
Asp718I	GGTACC	2 cut(s)	25, 1155
AspA2I	CCTAGG	1 cut(s)	1525
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
AsuHPI	GGTGA	3 cut(s)	170, 1053, 1813
AvaI	CYCGRG	3 cut(s)	279, 478, 809
AvaII	GGWCC	3 cut(s)	185, 230, 720
AvrII	CCTAGG	1 cut(s)	1525
AxyI	CCTNAGG	1 cut(s)	487
BalI	TGGCCA	3 cut(s)	405, 1134, 1514
BanI	GGYRCC	2 cut(s)	25, 1155
BarI	GAAGNNNNNNTAC	2 cut(s)	900, 932
BbsI	GAAGAC	1 cut(s)	1758
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	314, 985, 1715
BccI	CCATC	3 cut(s)	522, 855, 1785
BceAI	ACGGC	1 cut(s)	986
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	4 cut(s)	100, 535, 570, 1024
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	2 cut(s)	709, 1803
BcoDI	GTCTC	2 cut(s)	1535, 1606
BcuI	ACTAGT	2 cut(s)	335, 937
BfaI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
BfmI	CTRYAG	2 cut(s)	312, 1574
BfrI	CTTAAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	34
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	4 cut(s)	250, 303, 999, 1704
BlnI	CCTAGG	1 cut(s)	1525
BlsI	GCNGC	4 cut(s)	251, 304, 1000, 1705
BmcAI	AGTACT	1 cut(s)	1456
Bme1390I	CCNGG	4 cut(s)	100, 535, 570, 1024
Bme18I	GGWCC	3 cut(s)	185, 230, 720
BmeT110I	CYCGRG	3 cut(s)	279, 478, 809
BmgT120I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
BmiI	GGNNCC	5 cut(s)	27, 187, 807, 1157, 1279
BmrFI	CCNGG	4 cut(s)	100, 535, 570, 1024
BmsI	GCATC	4 cut(s)	122, 508, 1186, 1223
BpiI	GAAGAC	1 cut(s)	1758
BpmI	CTGGAG	4 cut(s)	591, 767, 852, 987
BsaAI	YACGTR	1 cut(s)	995
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	2 cut(s)	1615, 1774
BsaI	GGTCTC	1 cut(s)	1535
BsaJI	CCNNGG	5 cut(s)	247, 522, 716, 1022, 1525
BsaWI	WCCGGW	1 cut(s)	1587
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 227, 528
Bse1I	ACTGG	3 cut(s)	187, 784, 1354
Bse21I	CCTNAGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	427
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	4 cut(s)	100, 535, 570, 1024
BseDI	CCNNGG	5 cut(s)	247, 522, 716, 1022, 1525
BseGI	GGATG	8 cut(s)	46, 420, 523, 533, 847, 1238, 1641, 1744
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	4 cut(s)	386, 501, 935, 1601
BseNI	ACTGG	3 cut(s)	187, 784, 1354
BseRI	GAGGAG	1 cut(s)	1728
BseXI	GCAGC	3 cut(s)	314, 985, 1715
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	249
BshNI	GGYRCC	2 cut(s)	25, 1155
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	3 cut(s)	279, 478, 809
BsiSI	CCGG	1 cut(s)	1588
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BsmAI	GTCTC	2 cut(s)	1535, 1606
BsmBI	CGTCTC	1 cut(s)	1606
BsmFI	GGGAC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	1535
BsoBI	CYCGRG	3 cut(s)	279, 478, 809
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	2 cut(s)	247, 249
BspCNI	CTCAG	4 cut(s)	387, 500, 934, 1602
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	27, 187, 807, 1157, 1279
BspMAI	CTGCAG	1 cut(s)	1578
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	419, 647, 967
BspQI	GCTCTTC	1 cut(s)	1551
BspT107I	GGYRCC	2 cut(s)	25, 1155
BspTI	CTTAAG	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	1535
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	187, 784, 1354
BssECI	CCNNGG	5 cut(s)	247, 522, 716, 1022, 1525
BssMI	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
BssNI	GRCGYC	2 cut(s)	1615, 1774
BssT1I	CCWWGG	3 cut(s)	522, 716, 1525
Bst2UI	CCWGG	4 cut(s)	100, 535, 570, 1024
Bst4CI	ACNGT	6 cut(s)	54, 451, 606, 1059, 1253, 1271
Bst6I	CTCTTC	2 cut(s)	1551, 1787
BstACI	GRCGYC	2 cut(s)	1615, 1774
BstAFI	CTTAAG	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	995
BstC8I	GCNNGC	3 cut(s)	254, 1050, 1578
BstDEI	CTNAG	7 cut(s)	395, 487, 634, 921, 955, 1610, 1810
BstDSI	CCRYGG	2 cut(s)	247, 716
BstF5I	GGATG	8 cut(s)	46, 420, 523, 533, 847, 1238, 1641, 1744
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	8 cut(s)	401, 427, 655, 712, 757, 927, 962, 1806
BstMAI	GTCTC	2 cut(s)	1535, 1606
BstMBI	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
BstNI	CCWGG	4 cut(s)	100, 535, 570, 1024
BstNSI	RCATGY	1 cut(s)	1838
BstSCI	CCNGG	4 cut(s)	98, 533, 568, 1022
BstSFI	CTRYAG	2 cut(s)	312, 1574
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	314, 985, 1715
BstV2I	GAAGAC	1 cut(s)	1758
BstX2I	RGATCY	2 cut(s)	398, 652
BstXI	CCANNNNNNTGG	1 cut(s)	1382
BstYI	RGATCY	2 cut(s)	398, 652
Bsu36I	CCTNAGG	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	34
BtgI	CCRYGG	2 cut(s)	247, 716
BtsCI	GGATG	8 cut(s)	46, 420, 523, 533, 847, 1238, 1641, 1744
BtsI	GCAGTG	1 cut(s)	1637
BtsIMutI	CAGTG	4 cut(s)	611, 1276, 1607, 1637
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	254, 1050, 1578
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
Cfr42I	CCGCGG	1 cut(s)	250
CseI	GACGC	2 cut(s)	545, 1782
Csp6I	GTAC	5 cut(s)	26, 1015, 1156, 1455, 1676
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviQI	GTAC	5 cut(s)	26, 1015, 1156, 1455, 1676
DdeI	CTNAG	7 cut(s)	395, 487, 634, 921, 955, 1610, 1810
DpnI	GATC	8 cut(s)	400, 426, 654, 711, 756, 926, 961, 1805
DpnII	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
DraIII	CACNNNGTG	1 cut(s)	1067
EaeI	YGGCCR	3 cut(s)	403, 1132, 1512
Eam1104I	CTCTTC	2 cut(s)	1551, 1787
EarI	CTCTTC	2 cut(s)	1551, 1787
Eco130I	CCWWGG	3 cut(s)	522, 716, 1525
Eco147I	AGGCCT	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	1535
Eco47I	GGWCC	3 cut(s)	185, 230, 720
Eco57I	CTGAAG	3 cut(s)	995, 1742, 1770
Eco81I	CCTNAGG	1 cut(s)	487
Eco88I	CYCGRG	3 cut(s)	279, 478, 809
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	4 cut(s)	98, 533, 568, 1022
EcoT14I	CCWWGG	3 cut(s)	522, 716, 1525
EcoT22I	ATGCAT	2 cut(s)	1238, 1429
ErhI	CCWWGG	3 cut(s)	522, 716, 1525
Esp3I	CGTCTC	1 cut(s)	1606
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 1716, 1748
FaqI	GGGAC	1 cut(s)	171
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	2 cut(s)	709, 1803
Fnu4HI	GCNGC	4 cut(s)	250, 303, 999, 1704
FokI	GGATG	8 cut(s)	33, 427, 530, 540, 834, 1245, 1648, 1751
Fsp4HI	GCNGC	4 cut(s)	250, 303, 999, 1704
FspBI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	250, 303, 999, 1704
GsuI	CTGGAG	4 cut(s)	591, 767, 852, 987
HapII	CCGG	1 cut(s)	1588
HgaI	GACGC	2 cut(s)	545, 1782
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	1615, 1774
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	2 cut(s)	166, 844
HindII	GTYRAC	2 cut(s)	166, 844
HinfI	GANTC	7 cut(s)	143, 610, 812, 1082, 1210, 1365, 1814
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	1588
HphI	GGTGA	3 cut(s)	170, 1053, 1813
Hpy166II	GTNNAC	2 cut(s)	166, 844
Hpy188I	TCNGA	5 cut(s)	40, 743, 891, 924, 1761
Hpy188III	TCNNGA	6 cut(s)	683, 809, 816, 966, 1193, 1619
Hpy8I	GTNNAC	2 cut(s)	166, 844
Hpy99I	CGWCG	1 cut(s)	1620
HpyAV	CCTTC	6 cut(s)	223, 339, 1268, 1587, 1766, 1792
HpyCH4III	ACNGT	6 cut(s)	54, 451, 606, 1059, 1253, 1271
HpyCH4IV	ACGT	6 cut(s)	95, 994, 1137, 1615, 1623, 1648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
HpyF3I	CTNAG	7 cut(s)	395, 487, 634, 921, 955, 1610, 1810
HpySE526I	ACGT	6 cut(s)	95, 994, 1137, 1615, 1623, 1648
Hsp92I	GRCGYC	2 cut(s)	1615, 1774
HspAI	GCGC	1 cut(s)	111
KpnI	GGTACC	2 cut(s)	29, 1159
Ksp22I	TGATCA	2 cut(s)	709, 1803
KspAI	GTTAAC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
LguI	GCTCTTC	1 cut(s)	1551
LmnI	GCTCC	3 cut(s)	108, 811, 968
Lsp1109I	GCAGC	3 cut(s)	314, 985, 1715
LweI	GCATC	4 cut(s)	122, 508, 1186, 1223
MaeI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
MaeII	ACGT	6 cut(s)	95, 994, 1137, 1615, 1623, 1648
MaeIII	GTNAC	5 cut(s)	286, 1059, 1202, 1605, 1619
MalI	GATC	8 cut(s)	400, 426, 654, 711, 756, 926, 961, 1805
MboI	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
MboII	GAAGA	9 cut(s)	658, 770, 998, 1001, 1103, 1538, 1736, 1763, 1774
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	2 cut(s)	398, 652
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	3 cut(s)	405, 1134, 1514
MluNI	TGGCCA	3 cut(s)	405, 1134, 1514
MlyI	GAGTC	3 cut(s)	821, 1091, 1204
MmeI	TCCRAC	1 cut(s)	1305
Mox20I	TGGCCA	3 cut(s)	405, 1134, 1514
Mph1103I	ATGCAT	2 cut(s)	1238, 1429
MroXI	GAANNNNTTC	2 cut(s)	324, 1755
MscI	TGGCCA	3 cut(s)	405, 1134, 1514
MseI	TTAA	9 cut(s)	165, 191, 876, 1179, 1227, 1341, 1664, 1794, 1849
Msp20I	TGGCCA	3 cut(s)	405, 1134, 1514
MspA1I	CMGCKG	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	1588
MspR9I	CCNGG	4 cut(s)	100, 535, 570, 1024
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	4 cut(s)	100, 535, 570, 1024
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
NcoI	CCATGG	1 cut(s)	716
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
NlaIV	GGNNCC	5 cut(s)	27, 187, 807, 1157, 1279
NmuCI	GTSAC	5 cut(s)	286, 1059, 1202, 1605, 1619
NsiI	ATGCAT	2 cut(s)	1238, 1429
NspI	RCATGY	1 cut(s)	1838
PaeR7I	CTCGAG	2 cut(s)	279, 478
PaqCI	CACCTGC	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	1551
PdmI	GAANNNNTTC	2 cut(s)	324, 1755
PfeI	GAWTC	4 cut(s)	143, 610, 1365, 1814
PflMI	CCANNNNNTGG	1 cut(s)	528
PfoI	TCCNGGA	2 cut(s)	98, 568
PkrI	GCNGC	4 cut(s)	251, 304, 1000, 1705
PleI	GAGTC	3 cut(s)	820, 1090, 1204
PpsI	GAGTC	3 cut(s)	820, 1090, 1204
Ppu21I	YACGTR	1 cut(s)	995
PshBI	ATTAAT	1 cut(s)	1227
PsiI	TTATAA	1 cut(s)	1103
Psp6I	CCWGG	4 cut(s)	98, 533, 568, 1022
PspGI	CCWGG	4 cut(s)	98, 533, 568, 1022
PspN4I	GGNNCC	5 cut(s)	27, 187, 807, 1157, 1279
PspPI	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
PspXI	VCTCGAGB	2 cut(s)	279, 478
PstI	CTGCAG	1 cut(s)	1578
PsuI	RGATCY	2 cut(s)	398, 652
RsaI	GTAC	5 cut(s)	27, 1016, 1157, 1456, 1677
RsaNI	GTAC	5 cut(s)	26, 1015, 1156, 1455, 1676
SacII	CCGCGG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	1551
SaqAI	TTAA	9 cut(s)	165, 191, 876, 1179, 1227, 1341, 1664, 1794, 1849
SatI	GCNGC	4 cut(s)	250, 303, 999, 1704
Sau3AI	GATC	8 cut(s)	398, 424, 652, 709, 754, 924, 959, 1803
Sau96I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
ScaI	AGTACT	1 cut(s)	1456
SchI	GAGTC	3 cut(s)	821, 1091, 1204
ScrFI	CCNGG	4 cut(s)	100, 535, 570, 1024
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	4 cut(s)	122, 508, 1186, 1223
SfcI	CTRYAG	2 cut(s)	312, 1574
Sfr274I	CTCGAG	2 cut(s)	279, 478
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	3 cut(s)	185, 230, 720
SlaI	CTCGAG	2 cut(s)	279, 478
SmlI	CTYRAG	3 cut(s)	190, 279, 478
SmoI	CTYRAG	3 cut(s)	190, 279, 478
SpeI	ACTAGT	2 cut(s)	335, 937
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	2 cut(s)	247, 249
SspMI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	4 cut(s)	98, 533, 568, 1022
StyI	CCWWGG	3 cut(s)	522, 716, 1525
TaaI	ACNGT	6 cut(s)	54, 451, 606, 1059, 1253, 1271
TaiI	ACGT	6 cut(s)	98, 997, 1140, 1618, 1626, 1651
TaqI	TCGA	3 cut(s)	280, 479, 1192
TatI	WGTACW	2 cut(s)	1014, 1454
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	4 cut(s)	143, 610, 1365, 1814
Tru1I	TTAA	9 cut(s)	165, 191, 876, 1179, 1227, 1341, 1664, 1794, 1849
Tru9I	TTAA	9 cut(s)	165, 191, 876, 1179, 1227, 1341, 1664, 1794, 1849
TscAI	CASTG	4 cut(s)	611, 1276, 1614, 1637
TseFI	GTSAC	5 cut(s)	286, 1059, 1202, 1605, 1619
TseI	GCWGC	3 cut(s)	302, 998, 1703
Tsp45I	GTSAC	5 cut(s)	286, 1059, 1202, 1605, 1619
TspGWI	ACGGA	3 cut(s)	121, 222, 1377
TspRI	CASTG	4 cut(s)	611, 1276, 1614, 1637
Van91I	CCANNNNNTGG	1 cut(s)	528
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	3 cut(s)	185, 230, 720
VspI	ATTAAT	1 cut(s)	1227
XapI	RAATTY	1 cut(s)	133
XbaI	TCTAGA	1 cut(s)	815
XceI	RCATGY	1 cut(s)	1838
XcmI	CCANNNNNNNNNTGG	2 cut(s)	730, 1288
XhoI	CTCGAG	2 cut(s)	279, 478
XmaJI	CCTAGG	1 cut(s)	1525
XmnI	GAANNNNTTC	2 cut(s)	324, 1755
XspI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
ZraI	GACGTC	1 cut(s)	1616
ZrmI	AGTACT	1 cut(s)	1456
Zsp2I	ATGCAT	2 cut(s)	1238, 1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.