Rw1G017310

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000678
Physical Location & Seq
Forward (+)
38359277 .. 38361807
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017310.1

Sequence Viewer

Length: 930 bp
ATGTCAGGTTCTTCAAATCAGAATACAGATAACTTTGTTATACATCACATACACAAAGAAAGCACTAAAAAGCTCCTTAATATTCTGTATGGTGATGCTAAAGGATGGTTTAAAAGAACCTGTTCTTTTCTGTATCCATATGTTCTCGGAGTTGTGAACCCTGATGCTAAAGCTGTACGAGGATGGAACAAGTTCTTTGTCATATCTGTAATAGAGATAGTAGACCAACCATATAAAATTGCTCTCAATTATCTCCATGGAAACTTTTTAGTCGACTTAATTATTGTTTTGCCACTTCCTCAGCAAATCAAACAAAGAATCTTCTCCGCCTGGCACTCTAGATTTCAATATTTTCCCAGGTTGTATAGGGTTCTGCCCCTGCTTGCTGGTCAATCTCCAAATGGCTTCTTTGTATTTGAGTCAGCTTGGACAAATTTTTTTATAAACACTCTCACTTTCTTGTTGGTTGGCCATGTTATTGGGTCATGCTGGTACCTCCTTGGCATACAGAGGGTTAACCAATGTCTTCGAGATGCCTGCCATAACTCTAATCTGCAGTCATGCGGGAGTTTAATAGATTGTTGCAATGCTCAATCTATTCCAGAGTCAACTAAATGGAGAGAAAATGAGGAGGCTGCTGGTTGTTTTAATCCGGAAGGAGATTTCTCCTATGGAGTATATACTGCAGTTGTCAATCTCACTACAAGAGATAGCATGACTAAATATTTATACTCACTGTTTTGGGGATTCCAGCAAATCAGCACTCTGGCAGGAAATCAAACTCCAAGCTATTTTAATGGAGAATTAATTGTTTGTACCATGGTAATTATTGGACTGGGACTCTTCTTCTTTGCTCTTCTAATTGGAAATATGCGGAATTTTCTTCGGTCTCTTGGACGGAGACGTTTTTCTCAAGAAAGAGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

309

Amino Acids

35.41

Weight (kDa)

9.02

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 69 - 293 2.6e-12 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
Acc65I GGTACC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 492
AccI GTMKAC 2 cut(s) 222, 273
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 3 cut(s) 327, 564, 874
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 2 cut(s) 433, 877
AfaI GTAC 3 cut(s) 177, 494, 817
AgsI TTSAA 2 cut(s) 15, 347
AjnI CCWGG 2 cut(s) 329, 356
AluBI AGCT 4 cut(s) 73, 173, 425, 789
AluI AGCT 4 cut(s) 73, 173, 425, 789
Alw26I GTCTC 2 cut(s) 894, 895
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 2 cut(s) 433, 877
AseI ATTAAT 1 cut(s) 806
Asp700I GAANNNNTTC 2 cut(s) 121, 191
Asp718I GGTACC 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 104
BalI TGGCCA 1 cut(s) 471
BanI GGYRCC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 518
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 622
BccI CCATC 2 cut(s) 99, 177
BcgI CGANNNNNNTGC 2 cut(s) 519, 553
BciT130I CCWGG 2 cut(s) 331, 358
BciVI GTATCC 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 894, 895
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 2 cut(s) 554, 684
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
Bme1390I CCNGG 2 cut(s) 331, 358
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 2 cut(s) 331, 358
BmrI ACTGGG 1 cut(s) 845
BmsI GCATC 3 cut(s) 85, 154, 523
BmuI ACTGGG 1 cut(s) 845
BpiI GAAGAC 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 897
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 4 cut(s) 256, 356, 499, 819
BsaWI WCCGGW 1 cut(s) 652
Bse1I ACTGG 1 cut(s) 840
Bse3DI GCAATG 1 cut(s) 592
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 2 cut(s) 331, 358
BseDI CCNNGG 4 cut(s) 256, 356, 499, 819
BseGI GGATG 2 cut(s) 110, 188
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 840
BseRI GAGGAG 1 cut(s) 644
BseXI GCAGC 1 cut(s) 622
BshFI GGCC 1 cut(s) 471
BshNI GGYRCC 1 cut(s) 492
BsiSI CCGG 1 cut(s) 653
BslFI GGGAC 1 cut(s) 852
BsmAI GTCTC 2 cut(s) 894, 895
BsmBI CGTCTC 1 cut(s) 895
BsmFI GGGAC 1 cut(s) 852
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 1 cut(s) 894
Bsp13I TCCGGA 1 cut(s) 652
Bsp19I CCATGG 2 cut(s) 256, 819
BspACI CCGC 3 cut(s) 327, 564, 874
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 494
BspMAI CTGCAG 2 cut(s) 558, 688
BspQI GCTCTTC 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 894
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 1 cut(s) 840
BssECI CCNNGG 4 cut(s) 256, 356, 499, 819
BssT1I CCWWGG 3 cut(s) 256, 499, 819
Bst2UI CCWGG 2 cut(s) 331, 358
Bst4CI ACNGT 1 cut(s) 738
Bst6I CTCTTC 2 cut(s) 848, 861
BstC8I GCNNGC 2 cut(s) 384, 538
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 2 cut(s) 256, 819
BstF5I GGATG 2 cut(s) 110, 188
BstMAI GTCTC 2 cut(s) 894, 895
BstNI CCWGG 2 cut(s) 331, 358
BstSCI CCNGG 2 cut(s) 329, 356
BstSFI CTRYAG 2 cut(s) 554, 684
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 1 cut(s) 518
BstXI CCANNNNNNTGG 1 cut(s) 479
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 471
BtgI CCRYGG 2 cut(s) 256, 819
BtsCI GGATG 2 cut(s) 110, 188
BtsIMutI CAGTG 1 cut(s) 734
Cac8I GCNNGC 2 cut(s) 384, 538
Csp6I GTAC 3 cut(s) 176, 493, 816
CviAII CATG 6 cut(s) 257, 473, 486, 561, 715, 820
CviJI RGCY 7 cut(s) 73, 173, 405, 425, 471, 635, 789
CviKI_1 RGCY 7 cut(s) 73, 173, 405, 425, 471, 635, 789
CviQI GTAC 3 cut(s) 176, 493, 816
DdeI CTNAG 1 cut(s) 300
DraI TTTAAA 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 848, 861
EarI CTCTTC 2 cut(s) 848, 861
EciI GGCGGA 1 cut(s) 316
Eco130I CCWWGG 3 cut(s) 256, 499, 819
Eco31I GGTCTC 1 cut(s) 894
EcoRII CCWGG 2 cut(s) 329, 356
EcoT14I CCWWGG 3 cut(s) 256, 499, 819
ErhI CCWWGG 3 cut(s) 256, 499, 819
Esp3I CGTCTC 1 cut(s) 895
FaeI CATG 6 cut(s) 260, 476, 489, 564, 718, 823
FaqI GGGAC 1 cut(s) 852
FatI CATG 6 cut(s) 256, 472, 485, 560, 714, 819
FauI CCCGC 1 cut(s) 557
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 2 cut(s) 222, 273
Fnu4HI GCNGC 1 cut(s) 636
FokI GGATG 2 cut(s) 117, 195
Fsp4HI GCNGC 1 cut(s) 636
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 636
HaeIII GGCC 1 cut(s) 471
HapII CCGG 1 cut(s) 653
Hin1II CATG 6 cut(s) 260, 476, 489, 564, 718, 823
HincII GTYRAC 3 cut(s) 274, 517, 609
HindII GTYRAC 3 cut(s) 274, 517, 609
HinfI GANTC 5 cut(s) 318, 419, 605, 747, 840
HpaI GTTAAC 1 cut(s) 517
HpaII CCGG 1 cut(s) 653
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 6 cut(s) 157, 223, 274, 517, 609, 925
Hpy188I TCNGA 2 cut(s) 21, 149
Hpy188III TCNNGA 5 cut(s) 339, 530, 602, 653, 914
Hpy8I GTNNAC 6 cut(s) 157, 223, 274, 517, 609, 925
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 1 cut(s) 738
HpyCH4IV ACGT 1 cut(s) 904
HpyCH4V TGCA 3 cut(s) 556, 585, 686
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 904
Hsp92II CATG 6 cut(s) 260, 476, 489, 564, 718, 823
Kpn2I TCCGGA 1 cut(s) 652
KpnI GGTACC 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 517
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 3 cut(s) 85, 154, 523
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 904
MboII GAAGA 7 cut(s) 3, 313, 518, 835, 838, 848, 875
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 9 cut(s) 237, 247, 279, 433, 803, 807, 825, 861, 877
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 3 cut(s) 428, 614, 834
MnlI CCTC 6 cut(s) 173, 309, 504, 506, 622, 625
Mox20I TGGCCA 1 cut(s) 471
MroI TCCGGA 1 cut(s) 652
MroXI GAANNNNTTC 2 cut(s) 121, 191
MscI TGGCCA 1 cut(s) 471
MseI TTAA 8 cut(s) 78, 111, 278, 516, 572, 648, 795, 806
Msp20I TGGCCA 1 cut(s) 471
MspI CCGG 1 cut(s) 653
MspR9I CCNGG 2 cut(s) 331, 358
MvaI CCWGG 2 cut(s) 331, 358
NcoI CCATGG 2 cut(s) 256, 819
NdeI CATATG 1 cut(s) 139
NlaIII CATG 6 cut(s) 260, 476, 489, 564, 718, 823
NlaIV GGNNCC 1 cut(s) 494
PciSI GCTCTTC 1 cut(s) 861
PdmI GAANNNNTTC 2 cut(s) 121, 191
PfeI GAWTC 2 cut(s) 318, 747
PkrI GCNGC 1 cut(s) 637
PleI GAGTC 3 cut(s) 427, 613, 834
PpsI GAGTC 3 cut(s) 427, 613, 834
PshBI ATTAAT 1 cut(s) 806
PsiI TTATAA 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 329, 356
PspGI CCWGG 2 cut(s) 329, 356
PspN4I GGNNCC 1 cut(s) 494
PstI CTGCAG 2 cut(s) 558, 688
RsaI GTAC 3 cut(s) 177, 494, 817
RsaNI GTAC 3 cut(s) 176, 493, 816
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 8 cut(s) 78, 111, 278, 516, 572, 648, 795, 806
SatI GCNGC 1 cut(s) 636
SchI GAGTC 3 cut(s) 428, 614, 834
ScrFI CCNGG 2 cut(s) 331, 358
SetI ASST 9 cut(s) 10, 75, 122, 175, 362, 427, 498, 791, 907
SfaNI GCATC 3 cut(s) 85, 154, 523
SfcI CTRYAG 2 cut(s) 554, 684
SmlI CTYRAG 1 cut(s) 912
SmoI CTYRAG 1 cut(s) 912
Sse9I AATT 9 cut(s) 237, 247, 279, 433, 803, 807, 825, 861, 877
SsiI CCGC 3 cut(s) 327, 564, 874
SspI AATATT 3 cut(s) 82, 350, 725
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 329, 356
StyI CCWWGG 3 cut(s) 256, 499, 819
TaaI ACNGT 1 cut(s) 738
TaiI ACGT 1 cut(s) 907
TaqI TCGA 2 cut(s) 273, 529
TaqII GACCGA 1 cut(s) 876
TasI AATT 9 cut(s) 237, 247, 279, 433, 803, 807, 825, 861, 877
TfiI GAWTC 2 cut(s) 318, 747
Tru1I TTAA 8 cut(s) 78, 111, 278, 516, 572, 648, 795, 806
Tru9I TTAA 8 cut(s) 78, 111, 278, 516, 572, 648, 795, 806
TscAI CASTG 1 cut(s) 741
TseI GCWGC 1 cut(s) 635
TspGWI ACGGA 1 cut(s) 913
TspRI CASTG 1 cut(s) 741
VspI ATTAAT 1 cut(s) 806
XapI RAATTY 2 cut(s) 433, 877
XbaI TCTAGA 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 222, 273
XmnI GAANNNNTTC 2 cut(s) 121, 191
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.