Prupe.1G183800_v2.0.a1

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000678
Physical Location & Seq
Forward (+)
16437468 .. 16439374
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G183800.1

Sequence Viewer

Length: 462 bp
ATGTACAGATCCAAGAAACCCAAAGATGAGAAGGAAGCAGTTTCAAGCATCTTAGAGGACCTACACGGTTTCTCCTATGGAATCTACACTAAAGCTGTCAAGCTCACTACAGCAGATACCGTGACTAGCTATGTATACTCATTGTTTTGGGGATTCCAGCAAATCAGCACTCAGGCAGGAAATCAAGTTCCAAGCTACTTTGTTTGGGAAGTCCTTTTTACCATGGCAATTATTGGACAGGGCCTCTTGCTCTTTGCTCTTCTAATTGTAAATATGCATAATTTTCTTCAATCTCTTGGACGGAGGTACTACTTTCTACTATCGTTTCTGCTTCTTAAATGTTCTACATGCCAAAGCTGCTTGAAGGGATATAGGGGGTGGTTTGAATTCTCTCCTCGTTATTGCATTCTTGATACCCTCAGGTTCGACATACTACAGCAAGTTGAGGCCACTAAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

154

Amino Acids

17.72

Weight (kDa)

8.87

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AclWI GGATC 1 cut(s) 3
AcsI RAATTY 1 cut(s) 386
AfaI GTAC 2 cut(s) 5, 308
AgsI TTSAA 4 cut(s) 45, 290, 364, 386
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 6 cut(s) 95, 103, 129, 195, 357, 457
AluI AGCT 6 cut(s) 95, 103, 129, 195, 357, 457
AlwI GGATC 1 cut(s) 3
AoxI GGCC 2 cut(s) 241, 447
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 58, 241
AvaII GGWCC 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 419
BbvI GCAGC 1 cut(s) 344
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 3 cut(s) 108, 434, 458
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 58, 241
BmsI GCATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse21I CCTNAGG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 185, 433
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 344
BshFI GGCC 2 cut(s) 243, 449
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 2 cut(s) 243, 449
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 222
BspANI GGCC 2 cut(s) 243, 449
BspCNI CTCAG 2 cut(s) 184, 432
BspPI GGATC 1 cut(s) 3
BspQI GCTCTTC 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 8
BssNAI GTATAC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 222
Bst1107I GTATAC 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 68, 121
Bst6I CTCTTC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 4 cut(s) 52, 171, 419, 453
BstDSI CCRYGG 1 cut(s) 222
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 351
BstSFI CTRYAG 3 cut(s) 108, 434, 458
BstV1I GCAGC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BstZ17I GTATAC 1 cut(s) 136
Bsu36I CCTNAGG 1 cut(s) 419
BsuRI GGCC 2 cut(s) 243, 449
BtgI CCRYGG 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 58, 241
Csp6I GTAC 2 cut(s) 4, 307
CviAII CATG 2 cut(s) 223, 348
CviJI RGCY 8 cut(s) 95, 103, 129, 195, 243, 357, 449, 457
CviKI_1 RGCY 8 cut(s) 95, 103, 129, 195, 243, 357, 449, 457
CviQI GTAC 2 cut(s) 4, 307
DdeI CTNAG 4 cut(s) 52, 171, 419, 453
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 58
Eco81I CCTNAGG 1 cut(s) 419
EcoO109I RGGNCCY 2 cut(s) 58, 241
EcoRI GAATTC 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 226, 351
FatI CATG 2 cut(s) 222, 347
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 2 cut(s) 243, 449
Hin1II CATG 2 cut(s) 226, 351
HinfI GANTC 2 cut(s) 81, 153
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 410
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 25, 358
HpyCH4III ACNGT 2 cut(s) 68, 121
HpyCH4V TGCA 2 cut(s) 277, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 4 cut(s) 52, 171, 419, 453
Hsp92II CATG 2 cut(s) 226, 351
Kzo9I GATC 1 cut(s) 8
LguI GCTCTTC 1 cut(s) 264
LpnPI CCDG 5 cut(s) 158, 162, 170, 224, 406
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 2 cut(s) 251, 278
MflI RGATCY 1 cut(s) 8
MluCI AATT 4 cut(s) 228, 264, 280, 386
MnlI CCTC 6 cut(s) 49, 254, 297, 405, 428, 439
Mph1103I ATGCAT 1 cut(s) 279
MseI TTAA 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 357
NcoI CCATGG 1 cut(s) 222
NdeII GATC 1 cut(s) 8
NlaIII CATG 2 cut(s) 226, 351
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 264
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 81, 153
PkrI GCNGC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 58
PspPI GGNCC 2 cut(s) 58, 241
PspPPI RGGWCCY 1 cut(s) 58
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 2 cut(s) 5, 308
RsaNI GTAC 2 cut(s) 4, 307
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 2 cut(s) 58, 241
SetI ASST 9 cut(s) 63, 97, 105, 131, 197, 308, 359, 425, 459
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 3 cut(s) 108, 434, 458
SinI GGWCC 1 cut(s) 58
Sse9I AATT 4 cut(s) 228, 264, 280, 386
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 68, 121
TaqI TCGA 1 cut(s) 426
TasI AATT 4 cut(s) 228, 264, 280, 386
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 81, 153
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 386
XceI RCATGY 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.