Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

72385317 .. 72389375

Gene Structure 4059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAGAACTTCTGGTTGTTCGTCTTTGGAAGGGTCTTCAATGCCGCTGCTATAGTGATTCAAGATTGTGATGCAGTTGTGAACAAGGGCTTCTTCCATGGATACTCAGTTCTCATGATTCTCAACCATGCATTCAGTGGCATTTCTGTGTCTATGGTAATGAAGTATGCTGACAATATTGTGAAGGTAAAAGTTGGCATCAAACATAATATGAAGATATTTAAAAGGCCACAGCATGGATCACTGACCATTTATCTTTTGCAATCAACAAAGAAGATTCTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

95

Amino Acids

10.79

Weight (kDa)

10.07

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	1 - 62	6.6e-11	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	236
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	40, 62
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	45, 48
BlsI	GCNGC	2 cut(s)	46, 49
BmsI	GCATC	2 cut(s)	61, 207
BpiI	GAAGAC	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	114
BspPI	GGATC	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	142, 242
CciI	TCATGA	1 cut(s)	114
CviAII	CATG	4 cut(s)	98, 115, 128, 236
CviJI	RGCY	2 cut(s)	90, 229
CviKI_1	RGCY	2 cut(s)	90, 229
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
DraI	TTTAAA	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	101, 118, 131, 239
FaiI	YATR	9 cut(s)	53, 99, 116, 129, 155, 168, 207, 212, 237
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	4 cut(s)	97, 114, 127, 235
Fnu4HI	GCNGC	2 cut(s)	45, 48
Fsp4HI	GCNGC	2 cut(s)	45, 48
FspBI	CTAG	1 cut(s)	286
GluI	GCNGC	2 cut(s)	45, 48
HaeIII	GGCC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	101, 118, 131, 239
HinfI	GANTC	3 cut(s)	58, 118, 277
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	62, 115
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	24, 178
HpyCH4V	TGCA	3 cut(s)	74, 131, 262
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	4 cut(s)	101, 118, 131, 239
Kzo9I	GATC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	61, 207
MaeI	CTAG	1 cut(s)	286
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	5 cut(s)	16, 28, 85, 226, 286
Mph1103I	ATGCAT	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	101, 118, 131, 239
NsiI	ATGCAT	1 cut(s)	133
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	58, 118, 277
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	46, 49
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	45, 48
Sau3AI	GATC	1 cut(s)	239
SetI	ASST	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	61, 207
SfcI	CTRYAG	1 cut(s)	51
SgeI	CNNG	7 cut(s)	25, 74, 97, 110, 127, 140, 248
SmiMI	CAYNNNNRTG	1 cut(s)	146
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	97
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	58, 118, 277
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	142, 249
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	17, 176, 227
TspRI	CASTG	2 cut(s)	142, 249
Van91I	CCANNNNNTGG	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	286
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.