PHD-finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 49 |
| AclWI | GGATC | 1 cut(s) | 270 |
| AfaI | GTAC | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 266 |
| AgsI | TTSAA | 2 cut(s) | 27, 244 |
| AluBI | AGCT | 1 cut(s) | 235 |
| AluI | AGCT | 1 cut(s) | 235 |
| Alw26I | GTCTC | 1 cut(s) | 98 |
| AlwI | GGATC | 1 cut(s) | 270 |
| Ama87I | CYCGRG | 2 cut(s) | 215, 266 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 36 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 1 cut(s) | 148 |
| AvaI | CYCGRG | 2 cut(s) | 215, 266 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BaeGI | GKGCMC | 1 cut(s) | 196 |
| BbvI | GCAGC | 1 cut(s) | 48 |
| BceAI | ACGGC | 1 cut(s) | 137 |
| BcoDI | GTCTC | 1 cut(s) | 98 |
| BfaI | CTAG | 1 cut(s) | 108 |
| BisI | GCNGC | 1 cut(s) | 37 |
| BlsI | GCNGC | 1 cut(s) | 38 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmeT110I | CYCGRG | 2 cut(s) | 215, 266 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BmiI | GGNNCC | 1 cut(s) | 113 |
| BpmI | CTGGAG | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 269 |
| BsaBI | GATNNNNATC | 1 cut(s) | 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 266 |
| Bse1I | ACTGG | 1 cut(s) | 224 |
| Bse8I | GATNNNNATC | 1 cut(s) | 243 |
| BseJI | GATNNNNATC | 1 cut(s) | 243 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BseNI | ACTGG | 1 cut(s) | 224 |
| BseSI | GKGCMC | 1 cut(s) | 196 |
| BseXI | GCAGC | 1 cut(s) | 48 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKCI | CYCGRG | 2 cut(s) | 215, 266 |
| BsiSI | CCGG | 1 cut(s) | 260 |
| BslFI | GGGAC | 1 cut(s) | 125 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BsmAI | GTCTC | 1 cut(s) | 98 |
| BsmFI | GGGAC | 1 cut(s) | 125 |
| BsnI | GGCC | 1 cut(s) | 5 |
| BsoBI | CYCGRG | 2 cut(s) | 215, 266 |
| Bsp1286I | GDGCHC | 1 cut(s) | 196 |
| Bsp143I | GATC | 1 cut(s) | 262 |
| BspACI | CCGC | 1 cut(s) | 49 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspLI | GGNNCC | 1 cut(s) | 113 |
| BspPI | GGATC | 1 cut(s) | 270 |
| BsrI | ACTGG | 1 cut(s) | 224 |
| BssMI | GATC | 1 cut(s) | 262 |
| Bst6I | CTCTTC | 3 cut(s) | 89, 176, 267 |
| BstKTI | GATC | 1 cut(s) | 265 |
| BstMAI | GTCTC | 1 cut(s) | 98 |
| BstMBI | GATC | 1 cut(s) | 262 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 149 |
| BstSLI | GKGCMC | 1 cut(s) | 196 |
| BstV1I | GCAGC | 1 cut(s) | 48 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| Csp6I | GTAC | 1 cut(s) | 253 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 189, 224 |
| CviJI | RGCY | 7 cut(s) | 5, 118, 143, 223, 235, 259, 284 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 118, 143, 223, 235, 259, 284 |
| CviQI | GTAC | 1 cut(s) | 253 |
| DpnI | GATC | 1 cut(s) | 264 |
| DpnII | GATC | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 3 cut(s) | 89, 176, 267 |
| EarI | CTCTTC | 3 cut(s) | 89, 176, 267 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| Eco88I | CYCGRG | 2 cut(s) | 215, 266 |
| FaiI | YATR | 1 cut(s) | 34 |
| FaqI | GGGAC | 1 cut(s) | 125 |
| Fnu4HI | GCNGC | 1 cut(s) | 37 |
| Fsp4HI | GCNGC | 1 cut(s) | 37 |
| FspBI | CTAG | 1 cut(s) | 108 |
| GluI | GCNGC | 1 cut(s) | 37 |
| GsuI | CTGGAG | 1 cut(s) | 123 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 260 |
| HinfI | GANTC | 2 cut(s) | 23, 244 |
| HpaII | CCGG | 1 cut(s) | 260 |
| HphI | GGTGA | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy188III | TCNNGA | 1 cut(s) | 248 |
| HpyAV | CCTTC | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 1 cut(s) | 36 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 149 |
| Kzo9I | GATC | 1 cut(s) | 262 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| LpnPI | CCDG | 8 cut(s) | 56, 99, 128, 153, 221, 237, 270, 273 |
| Lsp1109I | GCAGC | 1 cut(s) | 48 |
| MaeI | CTAG | 1 cut(s) | 108 |
| MaeIII | GTNAC | 1 cut(s) | 154 |
| MalI | GATC | 1 cut(s) | 264 |
| MboI | GATC | 1 cut(s) | 262 |
| MboII | GAAGA | 6 cut(s) | 74, 103, 106, 190, 193, 284 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MhlI | GDGCHC | 1 cut(s) | 196 |
| MnlI | CCTC | 3 cut(s) | 20, 23, 274 |
| MslI | CAYNNNNRTG | 1 cut(s) | 60 |
| MspI | CCGG | 1 cut(s) | 260 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 149 |
| NdeII | GATC | 1 cut(s) | 262 |
| NlaIV | GGNNCC | 1 cut(s) | 113 |
| NmuCI | GTSAC | 1 cut(s) | 154 |
| PfeI | GAWTC | 2 cut(s) | 23, 244 |
| PkrI | GCNGC | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 1 cut(s) | 113 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| RsaI | GTAC | 1 cut(s) | 254 |
| RsaNI | GTAC | 1 cut(s) | 253 |
| RseI | CAYNNNNRTG | 1 cut(s) | 60 |
| SatI | GCNGC | 1 cut(s) | 37 |
| Sau3AI | GATC | 1 cut(s) | 262 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 196 |
| SetI | ASST | 5 cut(s) | 12, 60, 149, 164, 237 |
| SinI | GGWCC | 1 cut(s) | 112 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 60 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| SsiI | CCGC | 1 cut(s) | 49 |
| SspMI | CTAG | 1 cut(s) | 108 |
| TatI | WGTACW | 1 cut(s) | 252 |
| TfiI | GAWTC | 2 cut(s) | 23, 244 |
| TseFI | GTSAC | 1 cut(s) | 154 |
| TseI | GCWGC | 1 cut(s) | 36 |
| Tsp45I | GTSAC | 1 cut(s) | 154 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |
| XspI | CTAG | 1 cut(s) | 108 |