Rmu_sc0008565.1_g000001

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008565.1
OG0000678
Physical Location & Seq
Reverse (-)
1 .. 5032
5032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008565.1_g000001.1.cds

Sequence Viewer

Length: 1442 bp
atgggtaacataagaaacgatgaattaccaatgctaccttcacaattaccatccagttacgagaatacatttagttccattcctgttaattcaatggaatccagtggaactggaattggccgtgtagaccatacaggttccttacagattgatagcaaaaatcctttcacacctgcatgtgttccattccagcagtttacagattgcaatgatcctcactgcacattttgcaaaccacgtcatagtttgaaatcagttcaacacaaaaactacatagcttcaagtttgtttgatcataagctccataatattctgtatggtgatgctaagggatggtttaaaagaacctgttcttttctgtatccatatgttctcggagttgtgaaccctgatgctaaagctgtacgaggatggaacaagttctttgtcatatcttgcatggtggcagtttttgtagacccgctatttttcttcttgttatctgcacgagaggattataagtgcataactattaactgggccatgaccataatattagtgtttttccggacactgacggacttcatttacctattgcacatgcttcttcagtttaggttggcttacgtggctcctgggtctagagtggttggtacgggagagatagtagaccaaccatataaaattgctctcaattatctccatggaaactttttagtcgacttaattattgttttgccgcttcctcagatcataatgttgtcggttgttcctttgggatcgtttcgagcaaatcaaacaaagaatcttctccgcctggcagtattttttcaatactttcccaggttgtatagggttctgcccctgcttgctggtcaatctccaaatggattcttcgtattcgagtcagcttggacaaatttttttataaacactctcactttcttgttggttggccatgttattgggtcatgctggtaccttcttggcttacagagggttaaccaatgtcttcgagatgcctgccataactctaatctgcagtcatgtgggaatttaatagattgttgcaatgctcaatctattccagagtcaactagatggacagaaaatgagaaggctgctggttgttttaatccagaaggagatttctcctatggaatatatactccagttgtcaatctcactacaagagatagcatgactaaatatttatactcactgttttggggattccagcaaatcagcactttggcaggaaatcaaactccaagctattttaatggggaaattgtttttaccatggtaattattggactgggactcttcttctttgctcttctaattggaaatatgcagaattttcttcagtctcttggacggaggaggtttgatatgttattgcggagtcgtgatgttgagcagtggatgagttataggaacttaccagaagagcttagaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

480

Amino Acids

54.76

Weight (kDa)

8.46

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 498, 908
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
Acc65I GGTACC 1 cut(s) 957
AccB1I GGYRCC 1 cut(s) 957
AccI GTMKAC 4 cut(s) 126, 456, 648, 699
AccIII TCCGGA 1 cut(s) 546
AciI CCGC 4 cut(s) 461, 719, 793, 1384
AclWI GGATC 2 cut(s) 206, 766
AcoI YGGCCR 2 cut(s) 118, 934
AcsI RAATTY 3 cut(s) 898, 1033, 1339
AcuI CTGAAG 2 cut(s) 572, 1331
AfaI GTAC 3 cut(s) 405, 634, 959
AgsI TTSAA 5 cut(s) 93, 250, 260, 282, 812
AjiI CACGTC 1 cut(s) 239
AjnI CCWGG 3 cut(s) 613, 795, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 6 cut(s) 278, 301, 401, 890, 1254, 1435
AluI AGCT 6 cut(s) 278, 301, 401, 890, 1254, 1435
Alw26I GTCTC 1 cut(s) 1356
AlwI GGATC 2 cut(s) 206, 766
Aor13HI TCCGGA 1 cut(s) 546
AoxI GGCC 3 cut(s) 118, 519, 934
ApeKI GCWGC 1 cut(s) 1100
ApoI RAATTY 3 cut(s) 898, 1033, 1339
Asp700I GAANNNNTTC 2 cut(s) 349, 419
Asp718I GGTACC 1 cut(s) 957
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 1 cut(s) 332
BalI TGGCCA 1 cut(s) 936
BanI GGYRCC 1 cut(s) 957
BauI CACGAG 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 983
BbvI GCAGC 1 cut(s) 1087
BccI CCATC 4 cut(s) 58, 327, 405, 1074
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 2 cut(s) 984, 1018
BciT130I CCWGG 3 cut(s) 615, 797, 823
BciVI GTATCC 1 cut(s) 372
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 1356
BfaI CTAG 2 cut(s) 621, 1077
BfmI CTRYAG 1 cut(s) 1019
BfuAI ACCTGC 1 cut(s) 181
BfuI GTATCC 1 cut(s) 372
BisI GCNGC 2 cut(s) 719, 1101
BlsI GCNGC 2 cut(s) 720, 1102
Bme1390I CCNGG 3 cut(s) 615, 797, 823
BmgBI CACGTC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 3 cut(s) 139, 612, 959
BmrFI CCNGG 3 cut(s) 615, 797, 823
BmrI ACTGGG 2 cut(s) 526, 1307
BmsI GCATC 3 cut(s) 313, 382, 988
BmuI ACTGGG 2 cut(s) 526, 1307
BpiI GAAGAC 1 cut(s) 983
BpmI CTGGAG 1 cut(s) 1134
Bpu10I CCTNAGC 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 614, 682, 821, 1281
BsaWI WCCGGW 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bse1I ACTGG 6 cut(s) 54, 102, 115, 521, 1151, 1302
Bse3DI GCAATG 2 cut(s) 214, 1057
BseAI TCCGGA 1 cut(s) 546
BseBI CCWGG 3 cut(s) 615, 797, 823
BseDI CCNNGG 4 cut(s) 614, 682, 821, 1281
BseGI GGATG 4 cut(s) 50, 338, 416, 1413
BseMI GCAATG 2 cut(s) 214, 1057
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 6 cut(s) 54, 102, 115, 521, 1151, 1302
BseRI GAGGAG 1 cut(s) 1378
BseXI GCAGC 1 cut(s) 1087
BsgI GTGCAG 2 cut(s) 205, 468
BshFI GGCC 3 cut(s) 120, 521, 936
BshNI GGYRCC 1 cut(s) 957
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 1 cut(s) 1314
BsmAI GTCTC 1 cut(s) 1356
BsmFI GGGAC 1 cut(s) 1314
BsnI GGCC 3 cut(s) 120, 521, 936
Bsp13I TCCGGA 1 cut(s) 546
Bsp143I GATC 4 cut(s) 211, 292, 729, 758
Bsp19I CCATGG 2 cut(s) 682, 1281
BspACI CCGC 4 cut(s) 461, 719, 793, 1384
BspANI GGCC 3 cut(s) 120, 521, 936
BspCNI CTCAG 1 cut(s) 739
BspEI TCCGGA 1 cut(s) 546
BspLI GGNNCC 3 cut(s) 139, 612, 959
BspMAI CTGCAG 1 cut(s) 1023
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 206, 766
BspQI GCTCTTC 2 cut(s) 1323, 1425
BspT107I GGYRCC 1 cut(s) 957
BsrDI GCAATG 2 cut(s) 214, 1057
BsrI ACTGG 6 cut(s) 54, 102, 115, 521, 1151, 1302
BssECI CCNNGG 4 cut(s) 614, 682, 821, 1281
BssMI GATC 4 cut(s) 211, 292, 729, 758
BssSI CACGAG 1 cut(s) 486
BssT1I CCWWGG 2 cut(s) 682, 1281
Bst2BI CACGAG 1 cut(s) 486
Bst2UI CCWGG 3 cut(s) 615, 797, 823
Bst4CI ACNGT 1 cut(s) 1203
Bst6I CTCTTC 3 cut(s) 1310, 1323, 1425
BstAPI GCANNNNNTGC 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 849, 1003
BstDEI CTNAG 3 cut(s) 327, 726, 1436
BstDSI CCRYGG 2 cut(s) 682, 1281
BstF5I GGATG 4 cut(s) 50, 338, 416, 1413
BstKTI GATC 4 cut(s) 214, 295, 732, 761
BstMAI GTCTC 1 cut(s) 1356
BstMBI GATC 4 cut(s) 211, 292, 729, 758
BstMWI GCNNNNNNNGC 2 cut(s) 228, 608
BstNI CCWGG 3 cut(s) 615, 797, 823
BstNSI RCATGY 2 cut(s) 180, 583
BstSCI CCNGG 3 cut(s) 613, 795, 821
BstSFI CTRYAG 1 cut(s) 1019
BstV1I GCAGC 1 cut(s) 1087
BstV2I GAAGAC 1 cut(s) 983
BstXI CCANNNNNNTGG 1 cut(s) 944
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 3 cut(s) 120, 521, 936
BtgI CCRYGG 2 cut(s) 682, 1281
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 4 cut(s) 50, 338, 416, 1413
BtsI GCAGTG 2 cut(s) 217, 1409
BtsIMutI CAGTG 5 cut(s) 109, 217, 551, 1199, 1409
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 849, 1003
Cfr13I GGNCC 1 cut(s) 519
Csp6I GTAC 3 cut(s) 404, 633, 958
CviQI GTAC 3 cut(s) 404, 633, 958
DdeI CTNAG 3 cut(s) 327, 726, 1436
DpnI GATC 4 cut(s) 213, 294, 731, 760
DpnII GATC 4 cut(s) 211, 292, 729, 758
DraI TTTAAA 1 cut(s) 340
EaeI YGGCCR 2 cut(s) 118, 934
Eam1104I CTCTTC 3 cut(s) 1310, 1323, 1425
EarI CTCTTC 3 cut(s) 1310, 1323, 1425
EciI GGCGGA 1 cut(s) 782
Eco130I CCWWGG 2 cut(s) 682, 1281
Eco57I CTGAAG 2 cut(s) 572, 1331
EcoRII CCWGG 3 cut(s) 613, 795, 821
EcoT14I CCWWGG 2 cut(s) 682, 1281
ErhI CCWWGG 2 cut(s) 682, 1281
FaqI GGGAC 1 cut(s) 1314
FauI CCCGC 1 cut(s) 468
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 4 cut(s) 126, 456, 648, 699
Fnu4HI GCNGC 2 cut(s) 719, 1101
FokI GGATG 4 cut(s) 37, 345, 423, 1420
Fsp4HI GCNGC 2 cut(s) 719, 1101
FspBI CTAG 2 cut(s) 621, 1077
GluI GCNGC 2 cut(s) 719, 1101
GsuI CTGGAG 1 cut(s) 1134
HaeIII GGCC 3 cut(s) 120, 521, 936
HapII CCGG 1 cut(s) 547
HincII GTYRAC 3 cut(s) 700, 982, 1074
HindII GTYRAC 3 cut(s) 700, 982, 1074
HinfI GANTC 8 cut(s) 98, 784, 870, 884, 1070, 1212, 1302, 1387
HpaI GTTAAC 1 cut(s) 982
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 8 cut(s) 127, 198, 385, 457, 649, 700, 982, 1074
Hpy188I TCNGA 2 cut(s) 377, 729
Hpy188III TCNNGA 6 cut(s) 547, 621, 995, 1067, 1118, 1391
Hpy8I GTNNAC 8 cut(s) 127, 198, 385, 457, 649, 700, 982, 1074
HpyAV CCTTC 4 cut(s) 48, 971, 1090, 1115
HpyCH4III ACNGT 1 cut(s) 1203
HpyCH4IV ACGT 2 cut(s) 238, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 608
HpyF3I CTNAG 3 cut(s) 327, 726, 1436
HpySE526I ACGT 2 cut(s) 238, 606
Kpn2I TCCGGA 1 cut(s) 546
KpnI GGTACC 1 cut(s) 961
Ksp22I TGATCA 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 4 cut(s) 211, 292, 729, 758
LguI GCTCTTC 2 cut(s) 1323, 1425
LmnI GCTCC 2 cut(s) 306, 616
Lsp1109I GCAGC 1 cut(s) 1087
LweI GCATC 3 cut(s) 313, 382, 988
MaeI CTAG 2 cut(s) 621, 1077
MaeII ACGT 2 cut(s) 238, 606
MaeIII GTNAC 2 cut(s) 5, 56
MalI GATC 4 cut(s) 213, 294, 731, 760
MboI GATC 4 cut(s) 211, 292, 729, 758
MlsI TGGCCA 1 cut(s) 936
MluNI TGGCCA 1 cut(s) 936
MlyI GAGTC 4 cut(s) 893, 1079, 1296, 1396
MnlI CCTC 7 cut(s) 225, 401, 484, 735, 969, 1356, 1359
Mox20I TGGCCA 1 cut(s) 936
MroI TCCGGA 1 cut(s) 546
MroXI GAANNNNTTC 2 cut(s) 349, 419
MscI TGGCCA 1 cut(s) 936
MseI TTAA 8 cut(s) 87, 339, 513, 704, 981, 1037, 1113, 1260
MslI CAYNNNNRTG 1 cut(s) 175
Msp20I TGGCCA 1 cut(s) 936
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 3 cut(s) 615, 797, 823
MvaI CCWGG 3 cut(s) 615, 797, 823
MwoI GCNNNNNNNGC 2 cut(s) 228, 608
NcoI CCATGG 2 cut(s) 682, 1281
NdeI CATATG 1 cut(s) 367
NdeII GATC 4 cut(s) 211, 292, 729, 758
NlaIV GGNNCC 3 cut(s) 139, 612, 959
NspI RCATGY 2 cut(s) 180, 583
PaqCI CACCTGC 1 cut(s) 181
PciSI GCTCTTC 2 cut(s) 1323, 1425
PdmI GAANNNNTTC 2 cut(s) 349, 419
PfeI GAWTC 4 cut(s) 98, 784, 870, 1212
PkrI GCNGC 2 cut(s) 720, 1102
PleI GAGTC 4 cut(s) 892, 1078, 1296, 1395
PpsI GAGTC 4 cut(s) 892, 1078, 1296, 1395
Ppu21I YACGTR 1 cut(s) 607
PsiI TTATAA 2 cut(s) 498, 908
Psp6I CCWGG 3 cut(s) 613, 795, 821
PspGI CCWGG 3 cut(s) 613, 795, 821
PspN4I GGNNCC 3 cut(s) 139, 612, 959
PspPI GGNCC 1 cut(s) 519
PstI CTGCAG 1 cut(s) 1023
RsaI GTAC 3 cut(s) 405, 634, 959
RsaNI GTAC 3 cut(s) 404, 633, 958
RseI CAYNNNNRTG 1 cut(s) 175
SalI GTCGAC 1 cut(s) 698
SapI GCTCTTC 2 cut(s) 1323, 1425
SaqAI TTAA 8 cut(s) 87, 339, 513, 704, 981, 1037, 1113, 1260
SatI GCNGC 2 cut(s) 719, 1101
Sau3AI GATC 4 cut(s) 211, 292, 729, 758
Sau96I GGNCC 1 cut(s) 519
SchI GAGTC 4 cut(s) 893, 1079, 1296, 1396
ScrFI CCNGG 3 cut(s) 615, 797, 823
SfaNI GCATC 3 cut(s) 313, 382, 988
SfcI CTRYAG 1 cut(s) 1019
SmiMI CAYNNNNRTG 1 cut(s) 175
SsiI CCGC 4 cut(s) 461, 719, 793, 1384
SspI AATATT 3 cut(s) 310, 534, 1190
SspMI CTAG 2 cut(s) 621, 1077
StyD4I CCNGG 3 cut(s) 613, 795, 821
StyI CCWWGG 2 cut(s) 682, 1281
TaaI ACNGT 1 cut(s) 1203
TaiI ACGT 2 cut(s) 241, 609
TaqI TCGA 4 cut(s) 699, 766, 882, 994
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 4 cut(s) 98, 784, 870, 1212
Tru1I TTAA 8 cut(s) 87, 339, 513, 704, 981, 1037, 1113, 1260
Tru9I TTAA 8 cut(s) 87, 339, 513, 704, 981, 1037, 1113, 1260
TscAI CASTG 5 cut(s) 109, 224, 558, 1206, 1409
TseI GCWGC 1 cut(s) 1100
TspDTI ATGAA 2 cut(s) 36, 553
TspGWI ACGGA 2 cut(s) 572, 1375
TspRI CASTG 5 cut(s) 109, 224, 558, 1206, 1409
XapI RAATTY 3 cut(s) 898, 1033, 1339
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 2 cut(s) 180, 583
XmiI GTMKAC 4 cut(s) 126, 456, 648, 699
XmnI GAANNNNTTC 2 cut(s) 349, 419
XspI CTAG 2 cut(s) 621, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.