Rh4DG329100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000678
Physical Location & Seq
Reverse (-)
55233701 .. 55241613
7913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG329100.1

Sequence Viewer

Length: 246 bp
ATGTTAGAGAATGCTCTTGCTGCTCAAACACAAGTGGTAGACAAATTGCAAGAGATGGTGAGAGGCCTTTGTGCTCGGCTAAACCAAGGAGGAATTAACAATGAGTTAATCATTTGTTTCATGACTCTTGTGGTTGAGAATTTTAGGTCAAGACTTGTAGGCACCAAGAAGATGTTGGAACATATACCTGTTGTTGGATTTGTTGCAGAGCCTACTGTAGCCTCTCATGGATATCTACTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.96

Weight (kDa)

6.06

Isoelectric Point (pI)

22.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 76
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 70
BanI GGYRCC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 194
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 76
BspANI GGCC 1 cut(s) 66
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 66
CciI TCATGA 1 cut(s) 120
CviAII CATG 2 cut(s) 121, 227
CviJI RGCY 4 cut(s) 66, 79, 211, 221
CviKI_1 RGCY 4 cut(s) 66, 79, 211, 221
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 66
Eco32I GATATC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 124, 230
FaiI YATR 4 cut(s) 122, 183, 185, 228
FatI CATG 2 cut(s) 120, 226
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 2 cut(s) 124, 230
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 121, 150
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 49, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 124, 230
LpnPI CCDG 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 7
MboII GAAGA 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 44, 93, 139
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 156, 175
MnlI CCTC 3 cut(s) 56, 83, 232
MseI TTAA 2 cut(s) 96, 107
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 20
NlaIII CATG 2 cut(s) 124, 230
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 55
PagI TCATGA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 66
PctI GAATGC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 96, 107
SatI GCNGC 1 cut(s) 21
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 76
SetI ASST 2 cut(s) 149, 190
SfcI CTRYAG 1 cut(s) 216
Sse9I AATT 3 cut(s) 44, 93, 139
SseBI AGGCCT 1 cut(s) 66
StuI AGGCCT 1 cut(s) 66
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 217
TasI AATT 3 cut(s) 44, 93, 139
Tru1I TTAA 2 cut(s) 96, 107
Tru9I TTAA 2 cut(s) 96, 107
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 109
XapI RAATTY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.