Rmu_co8481019.1_g000001

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8481019.1
OG0000678
Physical Location & Seq
Reverse (-)
1326 .. 2177
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8481019.1_g000001.1.cds

Sequence Viewer

Length: 609 bp
atggacgatcctatcttagatgcaatatgtgagaaactaaaacaaaaaacatacattgaaggaaatgaaattttgtatcctggaggtatggttgagaatatggtttttattgtgcgtggaaagatggagagcattggggcggatgggactgttgatgacacattaaaggaaggtgatgtttgtggtgaggaacttctcagatggtgtcttgaggcttctgtaaacactgatgggaaaaatgtcaggatcactggtcggagattgctcagcaacagattggtaaggtgcttaactaacgtggaagcatttcaactccgagctgcagacctcgaacagttcactggacgttttgcaagatacttgcggaatccacgtgtacaaggagccataaggtatgaatctccgtactggagagggcttgcagcaaagcgaattcaagtagcttggaggtacaggcaaaagcgtctaaatcgcacaagcccacagagttgcccccgaaacccttactccgatcaaagtccagcggacttcttgagatcaacttatcgcccacatagttggggacttggaaatgatgctcgggagcgggaacactggggccttttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

202

Amino Acids

23.33

Weight (kDa)

9.16

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 586
AciI CCGC 4 cut(s) 140, 364, 524, 586
AclWI GGATC 2 cut(s) 2, 254
AcsI RAATTY 2 cut(s) 69, 432
AcvI CACGTG 1 cut(s) 374
AfaI GTAC 3 cut(s) 378, 407, 452
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 3 cut(s) 59, 311, 437
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 2 cut(s) 320, 443
AluI AGCT 2 cut(s) 320, 443
AlwI GGATC 2 cut(s) 2, 254
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 2 cut(s) 320, 422
ApoI RAATTY 2 cut(s) 69, 432
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 2 cut(s) 185, 197
AvaI CYCGRG 1 cut(s) 579
BbrPI CACGTG 1 cut(s) 374
BbvI GCAGC 2 cut(s) 307, 434
BccI CCATC 4 cut(s) 118, 137, 195, 224
BciT130I CCWGG 1 cut(s) 81
BciVI GTATCC 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 321
BfuI GTATCC 1 cut(s) 87
BisI GCNGC 2 cut(s) 321, 423
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 2 cut(s) 322, 424
Bme1390I CCNGG 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 2 cut(s) 385, 599
BmrFI CCNGG 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 2 cut(s) 10, 565
BmuI ACTGGG 1 cut(s) 604
BpmI CTGGAG 2 cut(s) 102, 430
Bpu1102I GCTNAGC 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 230, 553
BsaAI YACGTR 1 cut(s) 374
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 491, 521
Bse1I ACTGG 4 cut(s) 256, 346, 413, 599
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 211, 280
BseNI ACTGG 4 cut(s) 256, 346, 413, 599
BseXI GCAGC 2 cut(s) 307, 434
BshFI GGCC 1 cut(s) 600
BsiHKCI CYCGRG 1 cut(s) 579
BslFI GGGAC 2 cut(s) 160, 576
BsmFI GGGAC 2 cut(s) 160, 576
BsnI GGCC 1 cut(s) 600
BsoBI CYCGRG 1 cut(s) 579
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 4 cut(s) 7, 246, 511, 536
Bsp1720I GCTNAGC 1 cut(s) 266
BspACI CCGC 4 cut(s) 140, 364, 524, 586
BspANI GGCC 1 cut(s) 600
BspCNI CTCAG 2 cut(s) 210, 279
BspLI GGNNCC 2 cut(s) 385, 599
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 2 cut(s) 2, 254
BsrBI CCGCTC 1 cut(s) 586
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 4 cut(s) 256, 346, 413, 599
BssMI GATC 4 cut(s) 7, 246, 511, 536
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 151, 336
BstAUI TGTACA 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 3 cut(s) 16, 197, 266
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 4 cut(s) 10, 249, 514, 539
BstMBI GATC 4 cut(s) 7, 246, 511, 536
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 307, 434
BstXI CCANNNNNNTGG 1 cut(s) 558
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 600
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 4 cut(s) 225, 249, 339, 592
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 598
CseI GACGC 1 cut(s) 452
Csp6I GTAC 3 cut(s) 377, 406, 451
CviJI RGCY 7 cut(s) 215, 320, 386, 418, 443, 480, 600
CviKI_1 RGCY 7 cut(s) 215, 320, 386, 418, 443, 480, 600
CviQI GTAC 3 cut(s) 377, 406, 451
DdeI CTNAG 3 cut(s) 16, 197, 266
DpnI GATC 4 cut(s) 9, 248, 513, 538
DpnII GATC 4 cut(s) 7, 246, 511, 536
EciI GGCGGA 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 79
FaiI YATR 7 cut(s) 28, 52, 89, 101, 389, 396, 555
FaqI GGGAC 2 cut(s) 160, 576
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 2 cut(s) 321, 423
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 321, 423
GluI GCNGC 2 cut(s) 321, 423
GsuI CTGGAG 2 cut(s) 102, 430
HaeIII GGCC 1 cut(s) 600
HgaI GACGC 1 cut(s) 452
HinfI GANTC 2 cut(s) 367, 398
HphI GGTGA 2 cut(s) 185, 197
Hpy166II GTNNAC 3 cut(s) 223, 339, 377
Hpy188I TCNGA 5 cut(s) 200, 258, 317, 511, 608
Hpy188III TCNNGA 4 cut(s) 209, 244, 532, 581
Hpy8I GTNNAC 3 cut(s) 223, 339, 377
HpyAV CCTTC 2 cut(s) 53, 164
HpyCH4III ACNGT 2 cut(s) 151, 336
HpyCH4IV ACGT 3 cut(s) 297, 346, 373
HpyCH4V TGCA 4 cut(s) 23, 323, 353, 422
HpyF3I CTNAG 3 cut(s) 16, 197, 266
HpySE526I ACGT 3 cut(s) 297, 346, 373
Kzo9I GATC 4 cut(s) 7, 246, 511, 536
LmnI GCTCC 2 cut(s) 383, 583
LpnPI CCDG 9 cut(s) 66, 93, 229, 237, 327, 394, 439, 534, 580
Lsp1109I GCAGC 2 cut(s) 307, 434
LweI GCATC 2 cut(s) 10, 565
MaeII ACGT 3 cut(s) 297, 346, 373
MalI GATC 4 cut(s) 9, 248, 513, 538
MbiI CCGCTC 1 cut(s) 586
MboI GATC 4 cut(s) 7, 246, 511, 536
MluCI AATT 2 cut(s) 69, 432
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 6 cut(s) 77, 181, 205, 338, 407, 441
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 2 cut(s) 164, 290
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
NdeII GATC 4 cut(s) 7, 246, 511, 536
NlaIV GGNNCC 2 cut(s) 385, 599
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 367, 398
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 2 cut(s) 322, 424
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 79
PspCI CACGTG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 385, 599
PspPI GGNCC 1 cut(s) 598
PstI CTGCAG 1 cut(s) 325
RsaI GTAC 3 cut(s) 378, 407, 452
RsaNI GTAC 3 cut(s) 377, 406, 451
SaqAI TTAA 2 cut(s) 164, 290
SatI GCNGC 2 cut(s) 321, 423
Sau3AI GATC 4 cut(s) 7, 246, 511, 536
Sau96I GGNCC 1 cut(s) 598
ScrFI CCNGG 1 cut(s) 81
SfaNI GCATC 2 cut(s) 10, 565
SfcI CTRYAG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 209, 532
SmoI CTYRAG 2 cut(s) 209, 532
Sse9I AATT 2 cut(s) 69, 432
SsiI CCGC 4 cut(s) 140, 364, 524, 586
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 151, 336
TaiI ACGT 3 cut(s) 300, 349, 376
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 69, 432
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 2 cut(s) 367, 398
Tru1I TTAA 2 cut(s) 164, 290
Tru9I TTAA 2 cut(s) 164, 290
TscAI CASTG 4 cut(s) 232, 256, 346, 599
TseI GCWGC 2 cut(s) 320, 422
TspDTI ATGAA 2 cut(s) 81, 411
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 4 cut(s) 232, 256, 346, 599
XapI RAATTY 2 cut(s) 69, 432
XmnI GAANNNNTTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.