Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

12141743 .. 12142296

Gene Structure 554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG096900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAGAGGAATCAAAGAGAACCCAATCCTCTCTTTCACTATTGCTGCACAATTCCCAATTGATTTTGTTGATTTTGACGTTCAGGTAAAAGTTGGCATCAAACATAATATGAAGATATTTAAAAGGCCACAGCATGGATCACTGACCATTTATCTTTTGCAATCAACAAAGACGATTCTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

61

Amino Acids

7.0

Weight (kDa)

9.87

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	134
AclWI	GGATC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	134
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	184
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	134
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	145
BssMI	GATC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	140
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	1 cut(s)	127
CviKI_1	RGCY	1 cut(s)	127
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DraI	TTTAAA	1 cut(s)	121
FaeI	CATG	1 cut(s)	137
FaiI	YATR	3 cut(s)	105, 110, 135
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	184
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	2 cut(s)	9, 175
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	47, 160
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	137
LpnPI	CCDG	1 cut(s)	68
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	184
MaeII	ACGT	1 cut(s)	78
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	124
MfeI	CAATTG	1 cut(s)	57
MluCI	AATT	2 cut(s)	50, 57
MnlI	CCTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	120
MunI	CAATTG	1 cut(s)	57
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	9, 175
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	137
SetI	ASST	2 cut(s)	81, 87
SfaNI	GCATC	1 cut(s)	105
SgeI	CNNG	2 cut(s)	95, 146
Sse9I	AATT	2 cut(s)	50, 57
SspMI	CTAG	1 cut(s)	184
TaiI	ACGT	1 cut(s)	81
TasI	AATT	2 cut(s)	50, 57
TfiI	GAWTC	2 cut(s)	9, 175
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.