Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

36768687 .. 36770099

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1236300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGGCATAGACGCTTGCCAGAGGAACTTAGAAGGCGGGTGCGAGAAGCTGAGCGGTACACCTATGCAGCAACCAGAGGAGTAAATGAAGAAATGCTTTTGGGAATCCTGCCTGAAAACATTCAGATAAATATAAGACGCCATCTCTTCAAGTTTATTAAGAAAGTACGAATTTTTTCCCTGATGGATGAACGCATCTTAGATTCCATTTTTGGAAGACTAAGGCAAACGACATACATCAAGGAAAGTAAAGTTTTGTACCGTGGTGGTCTCATCGAGAAGATGGTTTTTATAGTGAGGGGGAAAATGGAGAGCATTGGAGAAGATGGGATTAGAATTCCGTTATCTGAAGGAGATGTTTGTGGTGAGGAACTTCTCACGTGGTGTCTTGAGCATTCTTCGGTAAACAAAGATGTTAAAAGGATCAGGATTCCTGGACAGCGGTTGCTTAGCAACAGGATGGTAAGATGCTTAACAAACGTTGAAGCATTTTCACTCCGAGCAGCTGACATTCAAGAAGTCACCAGTGTTTTCTCCAGATTCTTGCGCAACCCGCGTGTTCAAGGAGCCATAAGGTATGAGTCACCTTACTGGAGAGGCCTTGCAGCAAGATACATTCAAGTAGCATGGAGATACAGGAAAAAATGCCTACAGCAAGCAGACTCCTCTCAGTCTCAATCTCACTCTCAATCTCAATCCCAATCCCAATTCAATCATGCACTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

243

Amino Acids

28.44

Weight (kDa)

10.21

Isoelectric Point (pI)

61.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	727
Acc16I	TGCGCA	1 cut(s)	548
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	1 cut(s)	556
AciI	CCGC	4 cut(s)	37, 55, 442, 554
AclI	AACGTT	1 cut(s)	480
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	171, 336
AcuI	CTGAAG	1 cut(s)	369
AcvI	CACGTG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	59, 168, 260
AgsI	TTSAA	6 cut(s)	151, 485, 515, 563, 620, 712
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	2 cut(s)	50, 506
AluI	AGCT	2 cut(s)	50, 506
Alw26I	GTCTC	2 cut(s)	275, 678
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	3 cut(s)	68, 503, 605
ApoI	RAATTY	2 cut(s)	171, 336
Asp700I	GAANNNNTTC	2 cut(s)	120, 175
AspLEI	GCGC	1 cut(s)	549
AsuHPI	GGTGA	3 cut(s)	377, 514, 576
BbrPI	CACGTG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	80, 515, 617
BccI	CCATC	5 cut(s)	150, 178, 277, 320, 454
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	275, 678
BfmI	CTRYAG	1 cut(s)	650
BisI	GCNGC	3 cut(s)	69, 504, 606
BlpI	GCTNAGC	2 cut(s)	51, 449
BlsI	GCNGC	3 cut(s)	70, 505, 607
Bme1390I	CCNGG	1 cut(s)	435
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	204, 458
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	2 cut(s)	520, 613
Bpu1102I	GCTNAGC	2 cut(s)	51, 449
BpuEI	CTTGAG	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	525, 596
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	193, 465
BseMII	CTCAG	2 cut(s)	42, 683
BseNI	ACTGG	2 cut(s)	525, 596
BseRI	GAGGAG	2 cut(s)	93, 655
BseXI	GCAGC	3 cut(s)	80, 515, 617
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	600
BsmAI	GTCTC	2 cut(s)	275, 678
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	600
Bso31I	GGTCTC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	423
Bsp1720I	GCTNAGC	2 cut(s)	51, 449
BspACI	CCGC	4 cut(s)	37, 55, 442, 554
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	2 cut(s)	43, 682
BspFNI	CGCG	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	525, 596
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	263, 723
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	17, 657
BstDEI	CTNAG	6 cut(s)	29, 51, 199, 221, 449, 669
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	193, 465
BstFNI	CGCG	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	2 cut(s)	275, 678
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	650
BstUI	CGCG	1 cut(s)	556
BstV1I	GCAGC	3 cut(s)	80, 515, 617
BstV2I	GAAGAC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	193, 465
BtsIMutI	CAGTG	2 cut(s)	532, 719
Cac8I	GCNNGC	2 cut(s)	17, 657
CfoI	GCGC	1 cut(s)	549
CseI	GACGC	2 cut(s)	21, 147
Csp6I	GTAC	3 cut(s)	58, 167, 259
CviAII	CATG	2 cut(s)	627, 716
CviJI	RGCY	4 cut(s)	50, 506, 569, 600
CviKI_1	RGCY	4 cut(s)	50, 506, 569, 600
CviQI	GTAC	3 cut(s)	58, 167, 259
DdeI	CTNAG	6 cut(s)	29, 51, 199, 221, 449, 669
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
DraIII	CACNNNGTG	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	369
Eco72I	CACGTG	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	2 cut(s)	630, 719
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	2 cut(s)	626, 715
FauI	CCCGC	2 cut(s)	30, 561
Fnu4HI	GCNGC	3 cut(s)	69, 504, 606
FokI	GGATG	2 cut(s)	200, 472
Fsp4HI	GCNGC	3 cut(s)	69, 504, 606
FspI	TGCGCA	1 cut(s)	548
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	3 cut(s)	69, 504, 606
GsuI	CTGGAG	2 cut(s)	520, 613
HaeIII	GGCC	1 cut(s)	600
HgaI	GACGC	2 cut(s)	21, 147
HhaI	GCGC	1 cut(s)	549
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	630, 719
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HinfI	GANTC	6 cut(s)	105, 203, 430, 540, 581, 662
HphI	GGTGA	3 cut(s)	377, 514, 576
Hpy166II	GTNNAC	2 cut(s)	60, 406
Hpy188I	TCNGA	3 cut(s)	126, 349, 500
Hpy188III	TCNNGA	5 cut(s)	277, 389, 427, 515, 537
Hpy8I	GTNNAC	2 cut(s)	60, 406
HpyAV	CCTTC	2 cut(s)	27, 344
HpyCH4III	ACNGT	2 cut(s)	263, 723
HpyCH4IV	ACGT	2 cut(s)	380, 480
HpyCH4V	TGCA	3 cut(s)	68, 605, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	6 cut(s)	29, 51, 199, 221, 449, 669
HpySE526I	ACGT	2 cut(s)	380, 480
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	630, 719
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	566
Lsp1109I	GCAGC	3 cut(s)	80, 515, 617
LweI	GCATC	2 cut(s)	204, 458
MaeII	ACGT	2 cut(s)	380, 480
MaeIII	GTNAC	2 cut(s)	520, 582
MalI	GATC	1 cut(s)	425
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	423
MboII	GAAGA	6 cut(s)	101, 139, 228, 292, 335, 390
MluCI	AATT	3 cut(s)	171, 336, 707
MlyI	GAGTC	2 cut(s)	590, 656
MnlI	CCTC	6 cut(s)	16, 71, 291, 361, 590, 676
MroXI	GAANNNNTTC	2 cut(s)	120, 175
MseI	TTAA	3 cut(s)	159, 417, 473
MspA1I	CMGCKG	2 cut(s)	442, 506
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	2 cut(s)	630, 719
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	2 cut(s)	520, 582
NsbI	TGCGCA	1 cut(s)	548
PceI	AGGCCT	1 cut(s)	600
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	2 cut(s)	120, 175
PfeI	GAWTC	4 cut(s)	105, 203, 430, 540
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	3 cut(s)	70, 505, 607
PleI	GAGTC	2 cut(s)	589, 656
PmaCI	CACGTG	1 cut(s)	381
PmlI	CACGTG	1 cut(s)	381
PpsI	GAGTC	2 cut(s)	589, 656
Ppu21I	YACGTR	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	727
Psp1406I	AACGTT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	433
PspCI	CACGTG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	3 cut(s)	59, 168, 260
RsaNI	GTAC	3 cut(s)	58, 167, 259
SaqAI	TTAA	3 cut(s)	159, 417, 473
SatI	GCNGC	3 cut(s)	69, 504, 606
Sau3AI	GATC	1 cut(s)	423
SchI	GAGTC	2 cut(s)	590, 656
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	7 cut(s)	52, 65, 383, 483, 508, 578, 589
SfaNI	GCATC	2 cut(s)	204, 458
SfcI	CTRYAG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	171, 336, 707
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	4 cut(s)	37, 55, 442, 554
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	263, 723
TaiI	ACGT	2 cut(s)	383, 483
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	171, 336, 707
TfiI	GAWTC	4 cut(s)	105, 203, 430, 540
Tru1I	TTAA	3 cut(s)	159, 417, 473
Tru9I	TTAA	3 cut(s)	159, 417, 473
TscAI	CASTG	2 cut(s)	532, 726
TseFI	GTSAC	2 cut(s)	520, 582
TseI	GCWGC	3 cut(s)	68, 503, 605
Tsp45I	GTSAC	2 cut(s)	520, 582
TspDTI	ATGAA	2 cut(s)	102, 204
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	532, 726
XapI	RAATTY	2 cut(s)	171, 336
XmnI	GAANNNNTTC	2 cut(s)	120, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.