RchiOBHm_Chr4g0441651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000678
Physical Location & Seq
Reverse (-)
63442834 .. 63445364
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40946

Sequence Viewer

Length: 165 bp
ATGTTAGAGAATGCTCTTGCTGCTCAAACACAAGTGGTAGACAAATTGCAAGAGATGGTGAGAGGCCTTTGTGCTCGGCTAGACCAAGGAGGAAATAACAATGTAAAAGTTGGCATCAAACATAATATGAAGATGTTCAAGAGGCCACAACATAGATCACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.12

Weight (kDa)

10.18

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 39
AgsI TTSAA 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 76
AoxI GGCC 2 cut(s) 64, 143
ApeKI GCWGC 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 49
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmsI GCATC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 2 cut(s) 66, 145
BsiHKAI GWGCWC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 2 cut(s) 66, 145
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 155
BspANI GGCC 2 cut(s) 66, 145
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 85
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 66, 145
CviJI RGCY 3 cut(s) 66, 79, 145
CviKI_1 RGCY 3 cut(s) 66, 79, 145
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaiI YATR 4 cut(s) 123, 128, 153, 163
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 80
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 66, 145
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 155
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 123
MaeI CTAG 1 cut(s) 80
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 44
MnlI CCTC 3 cut(s) 56, 83, 135
MroXI GAANNNNTTC 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 1 cut(s) 155
NmeAIII GCCGAG 1 cut(s) 55
PceI AGGCCT 1 cut(s) 66
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 22
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 161
SgeI CNNG 7 cut(s) 29, 44, 62, 87, 92, 98, 151
Sse9I AATT 1 cut(s) 44
SseBI AGGCCT 1 cut(s) 66
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 66
StyI CCWWGG 1 cut(s) 85
TasI AATT 1 cut(s) 44
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.