Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Reverse (-)

529993 .. 537806

Gene Structure 7814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGGCTGATCATGAAAGAGATGAGGTACCTATGCTTTCGGATACTCATCCACAGTCATCAAATGAGCACCTGCCATTACAAATTGAGAGATTTATGTCCAGGAAACGGAGCGCATCAATTTCGATTCCTATGAATTCTATGGATTCATATGAAAGGGGTGAAGTTAACCTTGTAGGCCATACTGGTCCCTTAAGAACTCACACAAAAACACCCTTCTTACCTATGAGTGGTCCGTTATATGCTAACCGTGGCAGGCCTGATAGTGTTCTGCGGCTAACTCGAGGTGTGACAGGGCAAGAAGCAGCAGAAACTACAGCAGAAAAGTTTCCTTCTACTAGTGCAGCAAATGAGAATGAGTGGAATGACGACTATACTGCAAAAAACGATCACTTACTGAGATCTGGCCAATTGGGGATGTGCAATGATCCTTACTGCACAACTTGCCCAACTGTCTATAAGGCTACTCAACCAAAAGACTCGAGGCCCTCGGGCAAGTTCCCTAATGCTCTCTATGGGGATGCCAAGGGATGGGCCAGGAGGTTTTTCTCATGTCTGCGTCCATACATTTCTGGAGTTATGAACCCTCATGCTAAAATTGTGCAACAGTGGAATCAATTTTTTGTCATTTCTTGCTTAGTAGCAATTTTTGTAGATCCATTGTTTTTCTTCCTGCTGTCTGTTCAAGAGGATAATAAATGTATAGTTATTGATCAGCCATGGACCACTACTTTTGTGGTTTTCAGAAGCATGACTGATCTCATATACTTCATGCACATGCTTCTCCAGTTTAGATTGGCTTATGTGGCTCCCGAGTCTAGAGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCTCTCAATTACCTTAAAGGATATTTTCTGATTGACTTTTTTGTTGTATTACCACTTCCTCAGATCATACTATTACTAGTTCTGCCAAAGAACTTGGGATCATCTGGAGCAAACTACGCAAAAAATCTTTTACGTGCTGCCGTTCTTCTTCAGTACATTCCCAGGTTGTGTAGGTTTCTACCTCTGCTTGCTGGACAGTCACCAAGTGGATTCATATTTGAGTCAGCATGGGCCAATTTTATAATAAATCTTCTCACTTTTGTCTTATCTGGCCACGTCGTCGGGTCATGCTGGTACCTCTTTGGATTACAGAGGGTTAATCAATGTTTTCGAGATGCCTGTCACAAGACTCACAACTCTACGATTAATGGATGCATGAGGTTCATAGACTGTGGGCATGGAAGCGACAGTGAAGGTTCCAACGGGGATAAGGAACTGCGTAATACCTGGAAAAACAATGTAAATGCTATTGCTTGTTTTAACAAAACTGGTTTTGACTACGGAATCTACGCCCAAGCTGTTGGCCTTACGACAGAAAATAGCATAATCACTAGATATGTATATGCATTGTTTTGGGGATTTCAGCAAATCAGTACTCTGGCTGGAAACCAAGTTCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACAATGGCCATTATTGGCCTAGGTCTCTTGCTTTTTGCTCTTCTCATAGGAAATATGCAGAACTTTCTGCAGGCACTTGGCCGGAGAAGGTTAGAAATGTCACTGAGACGTCGTGACGTTGAGCAGTGGATGAGGCATAGACGTTTGCCAGATGAATTAAGGAGGCGAGTACGACAAGCTGAAAGGTATAATTGGGCAGCTACCAGAGGAGTAAATGAAGAAATGCTTTTGGATGTCTTGCCTGAAGACCTTCAGACAGATATAAGACGCCATCTCTTCAAGTTTATTAAGAAAGTAAGGATTTTTGCCCTCATGGATGGACCGATCTTAGATTCCATTTGCGGAAGACTAAGACAGAAGACATACATCCAAGGAAGCAAAGTTTTGTACTGTGGTGGTCTAATTGAGAAGATGGTCTTTATTGTGCGCGGAAAAATGGAGAGCATAGGAGAAGATGGGATTGGAGTTTCCTTATCTGAAGGGGATGTTTGTGGTGAGGAGCTTCTCTCATGGTGCCTCGAGCATTCTTCGGTAAATAAAGACGGTAAAAAGATCAGGATTCCTGGACAGCGAATGTTAAGCAACAGGACGGTGATATGCTTAACGAATGTCGAAGCATTTTCACTAAGGGCAGCTGACATTGAAGAGGTCACCAGCCTCTTTGCCAGATTCTTGCGCAAACCACGTGTTCAAGGAGCCATAAGGTATGAGTCACCTTACTGGAGAGGCCTTGCGGCAAGATGCATTCAAGTGGCTTGGAGATACAGGAGAAAGCGCCTACATCGTGCGGATACTTCTCAATCCAATCATGCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

774

Amino Acids

88.11

Weight (kDa)

9.26

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	204 - 529	3.7e-19	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1103
AarI	CACCTGC	1 cut(s)	78
AatII	GACGTC	1 cut(s)	1618
Acc16I	TGCGCA	1 cut(s)	2183
Acc36I	ACCTGC	1 cut(s)	78
Acc65I	GGTACC	2 cut(s)	25, 1155
AccB1I	GGYRCC	3 cut(s)	25, 1155, 2019
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccII	CGCG	1 cut(s)	1935
AciI	CCGC	5 cut(s)	271, 1848, 1935, 2240, 2294
AclWI	GGATC	3 cut(s)	419, 647, 967
AcoI	YGGCCR	4 cut(s)	403, 1132, 1512, 1585
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	4 cut(s)	995, 1742, 1770, 2004
AcvI	CACGTG	1 cut(s)	2192
AcyI	GRCGYC	2 cut(s)	1615, 1774
AdeI	CACNNNGTG	1 cut(s)	1067
AfaI	GTAC	6 cut(s)	27, 1016, 1157, 1456, 1677, 1895
AfiI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	2191
AgsI	TTSAA	5 cut(s)	683, 1786, 2150, 2198, 2255
AhlI	ACTAGT	2 cut(s)	335, 937
AjiI	CACGTC	1 cut(s)	1138
AjnI	CCWGG	5 cut(s)	98, 533, 1022, 1307, 2068
AjuI	GAANNNNNNNTTGG	2 cut(s)	1950, 1982
AloI	GAACNNNNNNTCC	2 cut(s)	1458, 1490
AluBI	AGCT	6 cut(s)	1379, 1482, 1685, 1706, 2008, 2141
AluI	AGCT	6 cut(s)	1379, 1482, 1685, 1706, 2008, 2141
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	1535, 1606
AlwI	GGATC	3 cut(s)	419, 647, 967
Ama87I	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
ApeKI	GCWGC	5 cut(s)	302, 341, 998, 1703, 2138
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	1227
Asp700I	GAANNNNTTC	2 cut(s)	324, 1755
Asp718I	GGTACC	2 cut(s)	25, 1155
AspA2I	CCTAGG	1 cut(s)	1525
AspLEI	GCGC	4 cut(s)	113, 1935, 2184, 2283
AspS9I	GGNCC	7 cut(s)	185, 230, 483, 531, 720, 1092, 1826
AsuHPI	GGTGA	6 cut(s)	170, 1053, 2012, 2110, 2149, 2211
AvaI	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
AvaII	GGWCC	4 cut(s)	185, 230, 720, 1826
AvrII	CCTAGG	1 cut(s)	1525
BalI	TGGCCA	3 cut(s)	405, 1134, 1514
BanI	GGYRCC	3 cut(s)	25, 1155, 2019
BarI	GAAGNNNNNNTAC	2 cut(s)	900, 932
BbrPI	CACGTG	1 cut(s)	2192
BbsI	GAAGAC	3 cut(s)	1758, 1858, 1871
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	5 cut(s)	314, 353, 985, 1715, 2150
BccI	CCATC	6 cut(s)	522, 855, 1785, 1817, 1912, 1955
BceAI	ACGGC	1 cut(s)	986
BcgI	CGANNNNNNTGC	4 cut(s)	102, 136, 356, 390
BciT130I	CCWGG	5 cut(s)	100, 535, 1024, 1309, 2070
BciVI	GTATCC	2 cut(s)	34, 2290
BclI	TGATCA	2 cut(s)	7, 709
BcoDI	GTCTC	2 cut(s)	1535, 1606
BcuI	ACTAGT	2 cut(s)	335, 937
BfaI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
BfmI	CTRYAG	2 cut(s)	312, 1574
BfoI	RGCGCY	1 cut(s)	2284
BfrI	CTTAAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	2 cut(s)	34, 2290
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	7 cut(s)	272, 303, 342, 999, 1704, 2139, 2241
BlnI	CCTAGG	1 cut(s)	1525
BlsI	GCNGC	7 cut(s)	273, 304, 343, 1000, 1705, 2140, 2242
BmcAI	AGTACT	1 cut(s)	1456
Bme1390I	CCNGG	5 cut(s)	100, 535, 1024, 1309, 2070
Bme18I	GGWCC	4 cut(s)	185, 230, 720, 1826
BmeT110I	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
BmgBI	CACGTC	1 cut(s)	1138
BmgT120I	GGNCC	7 cut(s)	185, 230, 483, 531, 720, 1092, 1826
BmiI	GGNNCC	7 cut(s)	27, 187, 807, 1157, 1279, 2021, 2203
BmrFI	CCNGG	5 cut(s)	100, 535, 1024, 1309, 2070
BmsI	GCATC	5 cut(s)	122, 508, 1186, 1223, 2237
BpiI	GAAGAC	3 cut(s)	1758, 1858, 1871
BplI	GAGNNNNNCTC	2 cut(s)	1997, 2029
BpmI	CTGGAG	5 cut(s)	591, 767, 852, 987, 2248
BsaAI	YACGTR	2 cut(s)	995, 2192
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	2 cut(s)	1615, 1774
BsaI	GGTCTC	1 cut(s)	1535
BsaJI	CCNNGG	7 cut(s)	247, 486, 522, 716, 1022, 1525, 1876
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 227, 528
Bse1I	ACTGG	4 cut(s)	187, 784, 1354, 2231
Bse3DI	GCAATG	1 cut(s)	427
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	5 cut(s)	100, 535, 1024, 1309, 2070
BseDI	CCNNGG	7 cut(s)	247, 486, 522, 716, 1022, 1525, 1876
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	386, 935, 1601
BseNI	ACTGG	4 cut(s)	187, 784, 1354, 2231
BseRI	GAGGAG	2 cut(s)	1728, 2018
BseXI	GCAGC	5 cut(s)	314, 353, 985, 1715, 2150
BsgI	GTGCAG	2 cut(s)	360, 418
Bsh1236I	CGCG	1 cut(s)	1935
BshNI	GGYRCC	3 cut(s)	25, 1155, 2019
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
BsiSI	CCGG	1 cut(s)	1588
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BsmAI	GTCTC	2 cut(s)	1535, 1606
BsmBI	CGTCTC	1 cut(s)	1606
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	2 cut(s)	2029, 2250
Bso31I	GGTCTC	1 cut(s)	1535
BsoBI	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	5 cut(s)	271, 1848, 1935, 2240, 2294
BspCNI	CTCAG	3 cut(s)	387, 934, 1602
BspFNI	CGCG	1 cut(s)	1935
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	7 cut(s)	27, 187, 807, 1157, 1279, 2021, 2203
BspMAI	CTGCAG	1 cut(s)	1578
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	419, 647, 967
BspQI	GCTCTTC	1 cut(s)	1551
BspT107I	GGYRCC	3 cut(s)	25, 1155, 2019
BspTI	CTTAAG	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	1535
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	4 cut(s)	187, 784, 1354, 2231
BssECI	CCNNGG	7 cut(s)	247, 486, 522, 716, 1022, 1525, 1876
BssNI	GRCGYC	2 cut(s)	1615, 1774
BssT1I	CCWWGG	4 cut(s)	522, 716, 1525, 1876
Bst2UI	CCWGG	5 cut(s)	100, 535, 1024, 1309, 2070
Bst6I	CTCTTC	3 cut(s)	1551, 1787, 2145
BstACI	GRCGYC	2 cut(s)	1615, 1774
BstAFI	CTTAAG	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstBAI	YACGTR	2 cut(s)	995, 2192
BstC8I	GCNNGC	3 cut(s)	254, 1050, 1578
BstDEI	CTNAG	7 cut(s)	395, 634, 921, 1610, 1834, 1856, 2132
BstDSI	CCRYGG	2 cut(s)	247, 716
BstEII	GGTNACC	1 cut(s)	2155
BstFNI	CGCG	1 cut(s)	1935
BstH2I	RGCGCY	1 cut(s)	2284
BstHHI	GCGC	4 cut(s)	113, 1935, 2184, 2283
BstMAI	GTCTC	2 cut(s)	1535, 1606
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
BstNI	CCWGG	5 cut(s)	100, 535, 1024, 1309, 2070
BstNSI	RCATGY	1 cut(s)	778
BstPI	GGTNACC	1 cut(s)	2155
BstSCI	CCNGG	5 cut(s)	98, 533, 1022, 1307, 2068
BstSFI	CTRYAG	2 cut(s)	312, 1574
BstUI	CGCG	1 cut(s)	1935
BstV1I	GCAGC	5 cut(s)	314, 353, 985, 1715, 2150
BstV2I	GAAGAC	3 cut(s)	1758, 1858, 1871
BstX2I	RGATCY	2 cut(s)	398, 652
BstXI	CCANNNNNNTGG	1 cut(s)	1382
BstYI	RGATCY	2 cut(s)	398, 652
BsuI	GTATCC	2 cut(s)	34, 2290
BtgI	CCRYGG	2 cut(s)	247, 716
BtrI	CACGTC	1 cut(s)	1138
BtsI	GCAGTG	1 cut(s)	1637
BtsIMutI	CAGTG	4 cut(s)	611, 1276, 1607, 1637
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	254, 1050, 1578
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	4 cut(s)	113, 1935, 2184, 2283
Cfr13I	GGNCC	7 cut(s)	185, 230, 483, 531, 720, 1092, 1826
CseI	GACGC	2 cut(s)	545, 1782
Csp6I	GTAC	6 cut(s)	26, 1015, 1156, 1455, 1676, 1894
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviQI	GTAC	6 cut(s)	26, 1015, 1156, 1455, 1676, 1894
DdeI	CTNAG	7 cut(s)	395, 634, 921, 1610, 1834, 1856, 2132
DraIII	CACNNNGTG	1 cut(s)	1067
EaeI	YGGCCR	4 cut(s)	403, 1132, 1512, 1585
Eam1104I	CTCTTC	3 cut(s)	1551, 1787, 2145
EarI	CTCTTC	3 cut(s)	1551, 1787, 2145
Eco130I	CCWWGG	4 cut(s)	522, 716, 1525, 1876
Eco147I	AGGCCT	2 cut(s)	256, 2235
Eco31I	GGTCTC	1 cut(s)	1535
Eco47I	GGWCC	4 cut(s)	185, 230, 720, 1826
Eco57I	CTGAAG	4 cut(s)	995, 1742, 1770, 2004
Eco72I	CACGTG	1 cut(s)	2192
Eco88I	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
Eco91I	GGTNACC	1 cut(s)	2155
EcoO109I	RGGNCCY	1 cut(s)	483
EcoO65I	GGTNACC	1 cut(s)	2155
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	5 cut(s)	98, 533, 1022, 1307, 2068
EcoT14I	CCWWGG	4 cut(s)	522, 716, 1525, 1876
EcoT22I	ATGCAT	3 cut(s)	1238, 1429, 2252
ErhI	CCWWGG	4 cut(s)	522, 716, 1525, 1876
Esp3I	CGTCTC	1 cut(s)	1606
FalI	AAGNNNNNCTT	6 cut(s)	153, 185, 1716, 1748, 1907, 1939
FaqI	GGGAC	1 cut(s)	171
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	2 cut(s)	7, 709
Fnu4HI	GCNGC	7 cut(s)	272, 303, 342, 999, 1704, 2139, 2241
Fsp4HI	GCNGC	7 cut(s)	272, 303, 342, 999, 1704, 2139, 2241
FspBI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
FspI	TGCGCA	1 cut(s)	2183
GlaI	GCGC	4 cut(s)	112, 1934, 2183, 2282
GluI	GCNGC	7 cut(s)	272, 303, 342, 999, 1704, 2139, 2241
GsuI	CTGGAG	5 cut(s)	591, 767, 852, 987, 2248
HaeII	RGCGCY	1 cut(s)	2284
HapII	CCGG	1 cut(s)	1588
HgaI	GACGC	2 cut(s)	545, 1782
HhaI	GCGC	4 cut(s)	113, 1935, 2184, 2283
Hin1I	GRCGYC	2 cut(s)	1615, 1774
Hin6I	GCGC	4 cut(s)	111, 1933, 2182, 2281
HinP1I	GCGC	4 cut(s)	111, 1933, 2182, 2281
HincII	GTYRAC	2 cut(s)	166, 844
HindII	GTYRAC	2 cut(s)	166, 844
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	1588
HphI	GGTGA	6 cut(s)	170, 1053, 2012, 2110, 2149, 2211
Hpy166II	GTNNAC	2 cut(s)	166, 844
Hpy188I	TCNGA	6 cut(s)	40, 743, 891, 924, 1761, 1984
Hpy188III	TCNNGA	9 cut(s)	11, 570, 683, 809, 816, 966, 1193, 1619, 2062
Hpy8I	GTNNAC	2 cut(s)	166, 844
Hpy99I	CGWCG	3 cut(s)	1142, 1145, 1620
HpyAV	CCTTC	6 cut(s)	223, 339, 1268, 1587, 1766, 1979
HpyCH4IV	ACGT	6 cut(s)	994, 1137, 1615, 1623, 1648, 2191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
HpyF3I	CTNAG	7 cut(s)	395, 634, 921, 1610, 1834, 1856, 2132
HpySE526I	ACGT	6 cut(s)	994, 1137, 1615, 1623, 1648, 2191
Hsp92I	GRCGYC	2 cut(s)	1615, 1774
HspAI	GCGC	4 cut(s)	111, 1933, 2182, 2281
KpnI	GGTACC	2 cut(s)	29, 1159
Ksp22I	TGATCA	2 cut(s)	7, 709
KspAI	GTTAAC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	1551
LmnI	GCTCC	5 cut(s)	108, 811, 968, 2005, 2201
Lsp1109I	GCAGC	5 cut(s)	314, 353, 985, 1715, 2150
LweI	GCATC	5 cut(s)	122, 508, 1186, 1223, 2237
MaeI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
MaeII	ACGT	6 cut(s)	994, 1137, 1615, 1623, 1648, 2191
MaeIII	GTNAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	2 cut(s)	398, 652
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	3 cut(s)	405, 1134, 1514
MluNI	TGGCCA	3 cut(s)	405, 1134, 1514
MlyI	GAGTC	5 cut(s)	470, 821, 1091, 1204, 2225
MmeI	TCCRAC	1 cut(s)	1305
Mox20I	TGGCCA	3 cut(s)	405, 1134, 1514
Mph1103I	ATGCAT	3 cut(s)	1238, 1429, 2252
MroXI	GAANNNNTTC	2 cut(s)	324, 1755
MscI	TGGCCA	3 cut(s)	405, 1134, 1514
MslI	CAYNNNNRTG	2 cut(s)	773, 2255
Msp20I	TGGCCA	3 cut(s)	405, 1134, 1514
MspA1I	CMGCKG	1 cut(s)	2141
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	1588
MspR9I	CCNGG	5 cut(s)	100, 535, 1024, 1309, 2070
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	2 cut(s)	2029, 2250
MvaI	CCWGG	5 cut(s)	100, 535, 1024, 1309, 2070
MvnI	CGCG	1 cut(s)	1935
MwoI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
NcoI	CCATGG	1 cut(s)	716
NdeI	CATATG	1 cut(s)	148
NlaIV	GGNNCC	7 cut(s)	27, 187, 807, 1157, 1279, 2021, 2203
NmuCI	GTSAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
NsbI	TGCGCA	1 cut(s)	2183
NsiI	ATGCAT	3 cut(s)	1238, 1429, 2252
NspI	RCATGY	1 cut(s)	778
PaeR7I	CTCGAG	3 cut(s)	279, 478, 2024
PagI	TCATGA	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	78
PceI	AGGCCT	2 cut(s)	256, 2235
PciSI	GCTCTTC	1 cut(s)	1551
PctI	GAATGC	2 cut(s)	2029, 2250
PdmI	GAANNNNTTC	2 cut(s)	324, 1755
PfeI	GAWTC	8 cut(s)	124, 143, 610, 1071, 1365, 1838, 2065, 2175
PflMI	CCANNNNNTGG	1 cut(s)	528
PfoI	TCCNGGA	2 cut(s)	98, 2068
PkrI	GCNGC	7 cut(s)	273, 304, 343, 1000, 1705, 2140, 2242
PleI	GAGTC	5 cut(s)	470, 820, 1090, 1204, 2224
PmaCI	CACGTG	1 cut(s)	2192
PmlI	CACGTG	1 cut(s)	2192
PpsI	GAGTC	5 cut(s)	470, 820, 1090, 1204, 2224
Ppu21I	YACGTR	2 cut(s)	995, 2192
PshBI	ATTAAT	1 cut(s)	1227
PsiI	TTATAA	1 cut(s)	1103
Psp6I	CCWGG	5 cut(s)	98, 533, 1022, 1307, 2068
PspCI	CACGTG	1 cut(s)	2192
PspEI	GGTNACC	1 cut(s)	2155
PspGI	CCWGG	5 cut(s)	98, 533, 1022, 1307, 2068
PspN4I	GGNNCC	7 cut(s)	27, 187, 807, 1157, 1279, 2021, 2203
PspPI	GGNCC	7 cut(s)	185, 230, 483, 531, 720, 1092, 1826
PspXI	VCTCGAGB	3 cut(s)	279, 478, 2024
PstI	CTGCAG	1 cut(s)	1578
PsuI	RGATCY	2 cut(s)	398, 652
PvuII	CAGCTG	1 cut(s)	2141
RsaI	GTAC	6 cut(s)	27, 1016, 1157, 1456, 1677, 1895
RsaNI	GTAC	6 cut(s)	26, 1015, 1156, 1455, 1676, 1894
RseI	CAYNNNNRTG	2 cut(s)	773, 2255
SapI	GCTCTTC	1 cut(s)	1551
SatI	GCNGC	7 cut(s)	272, 303, 342, 999, 1704, 2139, 2241
Sau96I	GGNCC	7 cut(s)	185, 230, 483, 531, 720, 1092, 1826
ScaI	AGTACT	1 cut(s)	1456
SchI	GAGTC	5 cut(s)	470, 821, 1091, 1204, 2225
ScrFI	CCNGG	5 cut(s)	100, 535, 1024, 1309, 2070
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	5 cut(s)	122, 508, 1186, 1223, 2237
SfcI	CTRYAG	2 cut(s)	312, 1574
Sfr274I	CTCGAG	3 cut(s)	279, 478, 2024
SinI	GGWCC	4 cut(s)	185, 230, 720, 1826
SlaI	CTCGAG	3 cut(s)	279, 478, 2024
SmiMI	CAYNNNNRTG	2 cut(s)	773, 2255
SmlI	CTYRAG	4 cut(s)	190, 279, 478, 2024
SmoI	CTYRAG	4 cut(s)	190, 279, 478, 2024
SpeI	ACTAGT	2 cut(s)	335, 937
SseBI	AGGCCT	2 cut(s)	256, 2235
SsiI	CCGC	5 cut(s)	271, 1848, 1935, 2240, 2294
SspMI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
StuI	AGGCCT	2 cut(s)	256, 2235
StyD4I	CCNGG	5 cut(s)	98, 533, 1022, 1307, 2068
StyI	CCWWGG	4 cut(s)	522, 716, 1525, 1876
TaiI	ACGT	6 cut(s)	997, 1140, 1618, 1626, 1651, 2194
TaqI	TCGA	6 cut(s)	122, 280, 479, 1192, 2025, 2118
TaqII	GACCGA	1 cut(s)	1843
TatI	WGTACW	3 cut(s)	1014, 1454, 1893
TauI	GCSGC	2 cut(s)	274, 2243
TfiI	GAWTC	8 cut(s)	124, 143, 610, 1071, 1365, 1838, 2065, 2175
TscAI	CASTG	4 cut(s)	611, 1276, 1614, 1637
TseFI	GTSAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
TseI	GCWGC	5 cut(s)	302, 341, 998, 1703, 2138
Tsp45I	GTSAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
TspGWI	ACGGA	3 cut(s)	121, 222, 1377
TspRI	CASTG	4 cut(s)	611, 1276, 1614, 1637
Van91I	CCANNNNNTGG	1 cut(s)	528
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	4 cut(s)	185, 230, 720, 1826
VspI	ATTAAT	1 cut(s)	1227
XapI	RAATTY	1 cut(s)	133
XbaI	TCTAGA	1 cut(s)	815
XceI	RCATGY	1 cut(s)	778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XhoI	CTCGAG	3 cut(s)	279, 478, 2024
XmaJI	CCTAGG	1 cut(s)	1525
XmnI	GAANNNNTTC	2 cut(s)	324, 1755
XspI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
ZraI	GACGTC	1 cut(s)	1616
ZrmI	AGTACT	1 cut(s)	1456
Zsp2I	ATGCAT	3 cut(s)	1238, 1429, 2252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.