Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

23875870 .. 23877973

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATTTATTCGCAGGATAATAACTGCATGGTTCTTGATTGGACTTTGACGACAAGACTTGTGATTTTCAGAAGCATCACTGATTTCATATACCTAATGCACATACTCCTTCAGTTTAGATTGGCTTATGTGGGTCCTGAGTCTAGGGTGGTTGGTGCTGGCGTTTTAGTTGACCATCCGAAGAAAATCGCTCTGAATTACCTTCAAGGATATTTTCTACTAGACTTTTTTAACGTATTACCGCTGCCTCAGATCATAACGTTGTTATTTCTACCAAACAACTTTGGATTAAGAGGAGCAAGCCCTGCAAAAAATCTTTTACGTGCTTCAGTTCTCGTTCAGTATATTCCCAGGTTATTTAGGTTTCTGCCTCTGTTCGCTGGTCAGAATCCAAGTAGCTTCATATTTGAGTCAGCATGGACAATTTTTGTAATAAATTCTCTCACTTTTGTGTTGGCTGGCCACGTTGTTGGATCGTGCTATTACCTCATGGGGCTACAGAGGATTAATCAATGTTTTGAAGATGCATTCGGTATCTCTGGAATTAATGGGTGTATAAGCTTCATAGATTGTGAGCATGGAAATGAATTTGGAGATTCTGGAGTAGATAATCCATCACTTGATAGCTGGAAAAACAATGCGAATGCTAGTGCATGTTTAACTCCAACTGGTTATACTTATGGAGTTTTCTACCAAACTGCCGCTCTTTCAACACAAAAGAGTGTAGTCACTAGATATATGTACGCATTGTTTTGGGGATTCCAGCAAATCAGTACCCTGGCTGGAAATCTAGTTCCAAGCTATTATGTTTGGGAAGTCCTATTTACAATGGGCAGCATTGCCGTAGGTCTCTTGCTTTTCGCTCTTCTCATTGGAAATATGCAGAACTTTCTGCAGGCTCTTGGCCGGAGAAGTAATTCACAACCCAATCTAAAGCCCAAGTCCATATCTAGTTTGATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

322

Amino Acids

35.89

Weight (kDa)

8.48

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	18 - 304	4.2e-16	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	704
AciI	CCGC	2 cut(s)	242, 702
AclI	AACGTT	1 cut(s)	260
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	460, 904
AcsI	RAATTY	2 cut(s)	436, 587
AcuI	CTGAAG	2 cut(s)	95, 312
AfaI	GTAC	2 cut(s)	743, 775
AgsI	TTSAA	3 cut(s)	206, 521, 711
AjnI	CCWGG	2 cut(s)	350, 777
AleI	CACNNNNGTG	1 cut(s)	449
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	4 cut(s)	399, 561, 627, 801
AluI	AGCT	4 cut(s)	399, 561, 627, 801
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	2 cut(s)	460, 904
ApeKI	GCWGC	2 cut(s)	244, 834
ApoI	RAATTY	2 cut(s)	436, 587
AseI	ATTAAT	2 cut(s)	507, 546
Asp700I	GAANNNNTTC	1 cut(s)	916
AspS9I	GGNCC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	231, 846
BccI	CCATC	2 cut(s)	183, 622
BceAI	ACGGC	1 cut(s)	827
BciT130I	CCWGG	2 cut(s)	352, 779
BcoDI	GTCTC	1 cut(s)	854
BfaI	CTAG	6 cut(s)	144, 221, 648, 732, 791, 951
BfmI	CTRYAG	2 cut(s)	497, 893
BisI	GCNGC	3 cut(s)	245, 702, 835
BlsI	GCNGC	3 cut(s)	246, 703, 836
Bme1390I	CCNGG	2 cut(s)	352, 779
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	352, 779
BmsI	GCATC	2 cut(s)	84, 514
BpmI	CTGGAG	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	2 cut(s)	350, 777
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	352, 779
BseDI	CCNNGG	2 cut(s)	350, 777
BseGI	GGATG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	129, 263
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	231, 846
BshFI	GGCC	2 cut(s)	462, 906
BsiSI	CCGG	1 cut(s)	907
BsmAI	GTCTC	1 cut(s)	854
BsmI	GAATGC	2 cut(s)	527, 649
BsnI	GGCC	2 cut(s)	462, 906
Bso31I	GGTCTC	1 cut(s)	854
Bsp143I	GATC	2 cut(s)	252, 473
BspACI	CCGC	2 cut(s)	242, 702
BspANI	GGCC	2 cut(s)	462, 906
BspCNI	CTCAG	2 cut(s)	130, 262
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	897
BspPI	GGATC	1 cut(s)	481
BspQI	GCTCTTC	1 cut(s)	870
BspTNI	GGTCTC	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	350, 777
BssMI	GATC	2 cut(s)	252, 473
Bst2UI	CCWGG	2 cut(s)	352, 779
Bst6I	CTCTTC	1 cut(s)	870
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	160, 301, 460, 897
BstDEI	CTNAG	2 cut(s)	138, 249
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	255, 476
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	2 cut(s)	252, 473
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	2 cut(s)	352, 779
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	350, 777
BstSFI	CTRYAG	2 cut(s)	497, 893
BstV1I	GCAGC	2 cut(s)	231, 846
BstXI	CCANNNNNNTGG	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	462, 906
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	4 cut(s)	160, 301, 460, 897
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	742, 774
CviAII	CATG	5 cut(s)	28, 417, 490, 578, 654
CviQI	GTAC	2 cut(s)	742, 774
DdeI	CTNAG	2 cut(s)	138, 249
DpnI	GATC	2 cut(s)	254, 475
DpnII	GATC	2 cut(s)	252, 473
EaeI	YGGCCR	2 cut(s)	460, 904
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Eco31I	GGTCTC	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	95, 312
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	350, 777
EcoT22I	ATGCAT	1 cut(s)	529
FaeI	CATG	5 cut(s)	31, 420, 493, 581, 657
FatI	CATG	5 cut(s)	27, 416, 489, 577, 653
Fnu4HI	GCNGC	3 cut(s)	245, 702, 835
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	245, 702, 835
FspBI	CTAG	6 cut(s)	144, 221, 648, 732, 791, 951
GluI	GCNGC	3 cut(s)	245, 702, 835
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	462, 906
HapII	CCGG	1 cut(s)	907
Hin1II	CATG	5 cut(s)	31, 420, 493, 581, 657
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	5 cut(s)	140, 388, 410, 596, 759
HpaII	CCGG	1 cut(s)	907
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	5 cut(s)	71, 180, 195, 252, 387
Hpy188III	TCNNGA	4 cut(s)	35, 137, 540, 600
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	119, 212
HpyCH4IV	ACGT	4 cut(s)	234, 260, 322, 465
HpyCH4V	TGCA	7 cut(s)	27, 100, 308, 527, 653, 883, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	138, 249
HpySE526I	ACGT	4 cut(s)	234, 260, 322, 465
Hsp92II	CATG	5 cut(s)	31, 420, 493, 581, 657
Kzo9I	GATC	2 cut(s)	252, 473
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	2 cut(s)	231, 846
LweI	GCATC	2 cut(s)	84, 514
MaeI	CTAG	6 cut(s)	144, 221, 648, 732, 791, 951
MaeII	ACGT	4 cut(s)	234, 260, 322, 465
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	2 cut(s)	254, 475
MbiI	CCGCTC	1 cut(s)	704
MboI	GATC	2 cut(s)	252, 473
MboII	GAAGA	3 cut(s)	193, 533, 857
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	6 cut(s)	196, 423, 436, 543, 587, 916
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	149, 419
MmeI	TCCRAC	2 cut(s)	451, 689
MnlI	CCTC	5 cut(s)	258, 287, 381, 495, 497
Mox20I	TGGCCA	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	916
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	5 cut(s)	231, 290, 507, 546, 659
MslI	CAYNNNNRTG	2 cut(s)	449, 582
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	1 cut(s)	907
MspR9I	CCNGG	2 cut(s)	352, 779
Mva1269I	GAATGC	2 cut(s)	527, 649
MvaI	CCWGG	2 cut(s)	352, 779
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	2 cut(s)	252, 473
NlaIII	CATG	5 cut(s)	31, 420, 493, 581, 657
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	657
OliI	CACNNNNGTG	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	870
PctI	GAATGC	2 cut(s)	527, 649
PdmI	GAANNNNTTC	1 cut(s)	916
PfeI	GAWTC	3 cut(s)	388, 596, 759
PkrI	GCNGC	3 cut(s)	246, 703, 836
PleI	GAGTC	2 cut(s)	148, 418
PpsI	GAGTC	2 cut(s)	148, 418
Ppu21I	YACGTR	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	134
PshBI	ATTAAT	2 cut(s)	507, 546
Psp1406I	AACGTT	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	350, 777
PspGI	CCWGG	2 cut(s)	350, 777
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	897
RsaI	GTAC	2 cut(s)	743, 775
RsaNI	GTAC	2 cut(s)	742, 774
RseI	CAYNNNNRTG	2 cut(s)	449, 582
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	5 cut(s)	231, 290, 507, 546, 659
SatI	GCNGC	3 cut(s)	245, 702, 835
Sau3AI	GATC	2 cut(s)	252, 473
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	149, 419
ScrFI	CCNGG	2 cut(s)	352, 779
SfaNI	GCATC	2 cut(s)	84, 514
SfcI	CTRYAG	2 cut(s)	497, 893
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	449, 582
Sse9I	AATT	6 cut(s)	196, 423, 436, 543, 587, 916
SsiI	CCGC	2 cut(s)	242, 702
SspMI	CTAG	6 cut(s)	144, 221, 648, 732, 791, 951
StyD4I	CCNGG	2 cut(s)	350, 777
TaiI	ACGT	4 cut(s)	237, 263, 325, 468
TasI	AATT	6 cut(s)	196, 423, 436, 543, 587, 916
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	3 cut(s)	388, 596, 759
Tru1I	TTAA	5 cut(s)	231, 290, 507, 546, 659
Tru9I	TTAA	5 cut(s)	231, 290, 507, 546, 659
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	244, 834
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	4 cut(s)	76, 391, 553, 600
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	2 cut(s)	507, 546
XapI	RAATTY	2 cut(s)	436, 587
XceI	RCATGY	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	916
XspI	CTAG	6 cut(s)	144, 221, 648, 732, 791, 951
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.