Rh2AG329100

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000678
Physical Location & Seq
Reverse (-)
47313038 .. 47313280
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG329100.1

Sequence Viewer

Length: 243 bp
ATGATGATGTCATTTTGCCCCATTCTTCCGGCGAAGAAGAGAAAGGAGACTAGGGACCGGCCCATTCTCCTTGACCCAACTCCAGCCACCTTCGCCGTCTCCACTTATTCGTTGTCGGCGAAGAAGAAGGTGTGGGCACTTCCGCCGAATTTATTTCCCGAGAAGCCGGTTTCAGAGTTGGATTTGAATCTCCAGTACAAGCCGGATCTTGGGAAAGAGATAGAAGCTGGTGGAGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

80

Amino Acids

8.96

Weight (kDa)

8.79

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 2 cut(s) 41, 103
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 55, 60
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 41, 103
BfaI CTAG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 55, 60
BmiI GGNNCC 1 cut(s) 56
BpmI CTGGAG 2 cut(s) 66, 176
BsaBI GATNNNNATC 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 2 cut(s) 57, 166
Bse1I ACTGG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 139
BshFI GGCC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 4 cut(s) 29, 58, 167, 203
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 2 cut(s) 41, 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 1 cut(s) 213
BsrFI RCCGGY 2 cut(s) 57, 166
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 2 cut(s) 57, 166
BssMI GATC 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 32
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 2 cut(s) 41, 103
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 61
Cfr10I RCCGGY 2 cut(s) 57, 166
Cfr13I GGNCC 2 cut(s) 55, 60
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 5 cut(s) 61, 86, 166, 202, 227
CviKI_1 RGCY 5 cut(s) 61, 86, 166, 202, 227
CviQI GTAC 1 cut(s) 196
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 103
FaqI GGGAC 1 cut(s) 68
FspBI CTAG 1 cut(s) 51
GsuI CTGGAG 2 cut(s) 66, 176
HaeIII GGCC 1 cut(s) 61
HapII CCGG 4 cut(s) 29, 58, 167, 203
HinfI GANTC 1 cut(s) 187
HpaII CCGG 4 cut(s) 29, 58, 167, 203
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 100, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 42, 71, 96, 180, 206, 213, 216
MaeI CTAG 1 cut(s) 51
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 5 cut(s) 17, 46, 49, 133, 136
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 159
MspI CCGG 4 cut(s) 29, 58, 167, 203
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PfeI GAWTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 55, 60
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 55, 60
SduI GDGCHC 1 cut(s) 139
SetI ASST 3 cut(s) 92, 132, 229
SinI GGWCC 1 cut(s) 55
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 51
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 148
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.