Rh2AG220400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000678
Physical Location & Seq
Forward (+)
22999934 .. 23003162
3229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG220400.1

Sequence Viewer

Length: 303 bp
ATGTCAGAGAATGCTCTTGCTGCTGAAACACAAGTGGTAGACAAATTGCAAGAAATGGTGAGAGGCCTTTGTGCTCGGCTAGACCAAGGAGGAAATAACAATCTTAGGACAGAGATTGAACAGAGATGTTGCACTCTTAATCGGAAGCTTGAACCGATAAAGCCTCCAATTTTCTTCTCTCTTCTCCCTGGGTTTTGTTTAATCAAAACACTGAGCAGGTTTAATTTCCTCGTTGGTGTAGGTTCAGATCCCTATTGCGGCGGTTGGTCAGGAGCAAAAGGCTGGTGCGATCCCTTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.1

Weight (kDa)

7.55

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17700 AT3G17700
fragaria_vesca FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 39
AciI CCGC 2 cut(s) 258, 261
AclWI GGATC 2 cut(s) 242, 284
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 119, 152
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 76
AlwI GGATC 2 cut(s) 242, 284
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 2 cut(s) 21, 259
BlsI GCNGC 2 cut(s) 22, 260
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 85, 187, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 85, 187, 188
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 257
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 247, 289
BspACI CCGC 2 cut(s) 258, 261
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 242, 284
BssECI CCNNGG 3 cut(s) 85, 187, 188
BssMI GATC 2 cut(s) 247, 289
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 104, 212
BstKTI GATC 2 cut(s) 250, 292
BstMBI GATC 2 cut(s) 247, 289
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 207
CviJI RGCY 5 cut(s) 66, 79, 148, 163, 282
CviKI_1 RGCY 5 cut(s) 66, 79, 148, 163, 282
DdeI CTNAG 2 cut(s) 104, 212
DpnI GATC 2 cut(s) 249, 291
DpnII GATC 2 cut(s) 247, 289
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 21, 259
Fsp4HI GCNGC 2 cut(s) 21, 259
FspBI CTAG 1 cut(s) 80
GluI GCNGC 2 cut(s) 21, 259
HaeIII GGCC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 146
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 7, 144, 247
Hpy188III TCNNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 49, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 104, 212
Kzo9I GATC 2 cut(s) 247, 289
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 5 cut(s) 174, 201, 202, 255, 268
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 1 cut(s) 80
MalI GATC 2 cut(s) 249, 291
MboI GATC 2 cut(s) 247, 289
MboII GAAGA 2 cut(s) 166, 173
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 44, 168, 223
MnlI CCTC 4 cut(s) 56, 83, 174, 239
MseI TTAA 3 cut(s) 138, 200, 222
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 2 cut(s) 247, 289
NmeAIII GCCGAG 1 cut(s) 55
PasI CCCWGGG 1 cut(s) 188
PceI AGGCCT 1 cut(s) 66
PctI GAATGC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 22, 260
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 247
SaqAI TTAA 3 cut(s) 138, 200, 222
SatI GCNGC 2 cut(s) 21, 259
Sau3AI GATC 2 cut(s) 247, 289
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 76
SetI ASST 3 cut(s) 150, 221, 244
Sse9I AATT 3 cut(s) 44, 168, 223
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 2 cut(s) 258, 261
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 85
TasI AATT 3 cut(s) 44, 168, 223
TauI GCSGC 1 cut(s) 261
Tru1I TTAA 3 cut(s) 138, 200, 222
Tru9I TTAA 3 cut(s) 138, 200, 222
TscAI CASTG 1 cut(s) 216
TseI GCWGC 1 cut(s) 20
TspRI CASTG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.