Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000678

Physical Location & Seq

Genomic Coordinates Forward (+)

29214049 .. 29217498

Gene Structure 3450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG271500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCTACCTCCTCTCAAAAGATTCAAACTTATGCAGCAACCAGCACCGCCACCACCTTGATGATATCATTTTGCCCATTCTTCCTGCGAAGAAGAGAAAGGAGACTAGGAACCAGCCCATTCTCCCTAACCCAACTCCTGCCACCTATTTGTTGTCGCCGAAGAAGAGGACACAGCATATGATGGATCATAATGTTGTCGGTTGTTCCTTTGGGATCGTTTCGAGCAAATCAAACAAAGAATCTTCTCCGCCTGGCAGACTAGATTTCAATATTTTCCCAGTTAATGATCAAGATTTTGATGCAGTTGTGAACAAGGGCTTCTTCCATGGATACTCAATTCTCATGATTCTCAACCATGCATTCAGTGGCATTTCTGTGTCTATGGTAATGAAGTATGCTAACAATATTGTGAAGTTGGCATCAAACATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

145

Amino Acids

16.26

Weight (kDa)

9.48

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	96 - 141	1.3e-07	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17700 AT3G17700
fragaria_vesca	FvH4_5g18080 FvH4_5g18080 FvH4_5g18080 FvH4_6g44780
malus_domestica	MD06G1236300.v1.1 MD09G1093300.v1.1 MD14G1243200.v1.1
prunus_persica	Prupe.1G183800_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.3G231900_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1 Prupe.5G240800_v2.0.a1
pyrus_communis	pycom06g21110 pycom06g21140 pycom06g21190 pycom14g20450
rosa_chinensis	RchiOBHm_Chr2g0161941 RchiOBHm_Chr4g0441651 RchiOBHm_Chr5g0083381 RchiOBHm_Chr6g0281101 RchiOBHm_Chr7g0177531
rosa_laevigata	RLG00000005528 RLG00000015203 RLG00000015445 RLG00000021309 RLG00000023742 RLG00000034422 RLG00000036136
rosa_multiflora	Rmu_co8432259.1_g000001 Rmu_co8481019.1_g000001 Rmu_sc0003410.1_g000009 Rmu_sc0004618.1_g000030 Rmu_sc0005144.1_g000007 Rmu_sc0008565.1_g000001 Rmu_sc0018381.1_g000003 Rmu_ssc0000330.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051700 Rroxscaffold_2G00088450 Rroxscaffold_2G00116130 Rroxscaffold_2G00126580 Rroxscaffold_3G00275780 Rroxscaffold_5G00338690 Rroxscaffold_5G00375080
rosa_rugosa	Rorug02G0493400 Rorug04G0058900 Rorug04G0059000 Rorug06G0407100
rosa_samantha	Rh2AG220400 Rh2AG282700 Rh2AG329100 Rh2AG559300 Rh2BG572700 Rh2CG542900 Rh2DG582500 Rh4AG135300 Rh4BG096100 Rh4DG026800 Rh4DG329100 Rh5CG271500 Rh6DG096900 Rh7AG006400 Rh7BG006300 Rh7CG006800 Rh7DG006400 Rh7DG278200
rosa_wichuraiana	Rw0G014790 Rw1G017310 Rw7G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	49, 251
AclWI	GGATC	2 cut(s)	195, 224
AgsI	TTSAA	2 cut(s)	27, 271
AjnI	CCWGG	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	195, 224
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	108, 263
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	292, 431
BmuI	ACTGGG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	48
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	187, 216, 289
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	2 cut(s)	49, 251
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	195, 224
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	3 cut(s)	187, 216, 289
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	2 cut(s)	89, 161
BstDSI	CCRYGG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	190, 219, 292
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	187, 216, 289
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	345
CviAII	CATG	3 cut(s)	329, 346, 359
CviJI	RGCY	3 cut(s)	5, 118, 321
CviKI_1	RGCY	3 cut(s)	5, 118, 321
DpnI	GATC	3 cut(s)	189, 218, 291
DpnII	GATC	3 cut(s)	187, 216, 289
Eam1104I	CTCTTC	2 cut(s)	89, 161
EarI	CTCTTC	2 cut(s)	89, 161
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	3 cut(s)	332, 349, 362
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	3 cut(s)	328, 345, 358
FauNDI	CATATG	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	108, 263
GluI	GCNGC	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	332, 349, 362
HinfI	GANTC	3 cut(s)	23, 242, 349
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	293, 346
Hpy8I	GTNNAC	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	36, 305, 362
Hsp92II	CATG	3 cut(s)	332, 349, 362
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	187, 216, 289
LpnPI	CCDG	7 cut(s)	56, 99, 128, 153, 240, 267, 294
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	2 cut(s)	292, 431
MaeI	CTAG	2 cut(s)	108, 263
MalI	GATC	3 cut(s)	189, 218, 291
MboI	GATC	3 cut(s)	187, 216, 289
MboII	GAAGA	7 cut(s)	74, 103, 106, 175, 178, 237, 316
MluCI	AATT	1 cut(s)	339
MnlI	CCTC	3 cut(s)	20, 23, 162
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	60, 377
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	328
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	3 cut(s)	187, 216, 289
NlaIII	CATG	3 cut(s)	332, 349, 362
NlaIV	GGNNCC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	364
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	23, 242, 349
PkrI	GCNGC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	113
RseI	CAYNNNNRTG	2 cut(s)	60, 377
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	3 cut(s)	187, 216, 289
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	3 cut(s)	12, 60, 149
SfaNI	GCATC	2 cut(s)	292, 431
SmiMI	CAYNNNNRTG	2 cut(s)	60, 377
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	49, 251
SspI	AATATT	2 cut(s)	274, 409
SspMI	CTAG	2 cut(s)	108, 263
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	328
TaqI	TCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	339
TfiI	GAWTC	3 cut(s)	23, 242, 349
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XspI	CTAG	2 cut(s)	108, 263
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.