Prupe.3G231800_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000687
Physical Location & Seq
Reverse (-)
22875103 .. 22877161
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G231800.1

Sequence Viewer

Length: 1704 bp
ATGATGGCTAACAAAAGAAAAATCGAAGGTTGCAGCGGCGCAGACATGAGTAAAAAGATGAAAAGCCACGAACAAGATGATGTTCAAAAAAACTCTGTGATGGCTAAGAAAAGAAAATTTGCAGGTTGCAGCGGCTCAAACATAAATAAAAAGATGAAAAGCCATGAACAAGATGATGTTCAGAAAAACCAAGAGCTCCCCATGGATGTGGACACGTACACACCAGAATTACCTGACCTTGTTGTCAACCAAATCCTCCTCCTCCTCCCCACCAAGCTCGCTGTCCGGGCCAGCACTCTCTCCCGGCAATGGCAACGCCTGTGGTCTTCGCTCCCGGTCTTGAATTTCGATGAGGATCTGCAGCTCTACGATTCTCAGTATGGCACTGACAGGGCAATGTTCCGGAAGTACTTGCTTAGCTGTTTGAAGCACCGCGAGAAGGACCAAGAAGAACATGACTTGGACACATTCAGGCTTAGCATGAGGTACTCTGGAGGTGCCAGTATGATAGATAAGTGGCTGAGTTTTGCTGTTGAGAGAAACGTTAAAGAGTTGGAGATCATCCTTATAAGAAAGTATGGGGACAGAAGCAAACACTACTTCTTGCCGCAAACGATCCTCAACGCACAATCTTTAACCACTCTGAGATTAAATAATGTGAAATTAAAAGACTACCCTATGCCTATAAGCCTTCCTAGTTTGAAAAATATGGTCCTCAAGAACATGGATTTGGGTAACGTGGGATTTGTCCACTTAATTTCTGGCTGCCCTTCCCTTGAGGACTTGTCGTTAACTTCGTGTGGGTTAAGGTTATGCAAAGTTTTGAGTTCAAGCCTCAAATCCTTGCAAATTGCTAGGTGCCGAAAAGTGAGAATTGAAGTTGAAGCTGTGAATCTTGAATCTTTTAGATTCTGGGGTGATTCTTATACTGAAATGTACATGCACAGCAGCCTCAATATCGCGTCGTGTCGATCGTTTAGACATCTGGAGTTTTTCGATACATGCTTTGGAGGCCGATGGTTTCATGACGACCTCAGTTCAAGATTTCCCCTGCTTGAGAGTTTGGTGTTGTATAAATGCAGCAACTTTTGGTCAGATAGCATCCACATCAATAATCAGACTCTGAAACGCCTTGCGTTTTGTGGACGCAACGGTTTTACTGTGAAAGTCAATATCAATACTCCAAATCTAGCTGCTTTTGAGTTTAGTACTGGTTATTTGCCGAGTCATCAGTTAAATGTTCTGTTCTCCAACTTTTCTCTGAATGCTCCAAATTTGTTGAAGGCCGACGTCAACTTCAACTTGGAAGACAGATATGGCAAAGAAGAAAATATCTTCGAAGACATAGATTTTCCTGCGTTAATAAACTTTCTCAGACATTTTGATTCCTCTGGAAGTTTAAGCCTAACCCTTAATGAAGCTGAGGCTCTTATCTTTCCAGCTGAAAGGAGAAATACATGTTCTCCACCACTACCTAGTCTCAGGCATCTTTGGGTAGCAGTAGATCCTTTAAAGAAGGTGAAAGATGATGTCTCTTCAAAGAAGGTGAAAGATGATGTCTCTTCAAAGAAGGTGAAAGATGATGTCTCTTCCAAGAAGGTGAAAGATGATGTCTTGAGCTTGAGGGATTCTTTGCAATGGATGGCACCAAGAGGGTACATTAACATGTTGATGGAAGAAGACAAGACAGTTAAATCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

568

Amino Acids

65.1

Weight (kDa)

8.78

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 1293
Acc36I ACCTGC 1 cut(s) 113
AccB1I GGYRCC 3 cut(s) 497, 858, 1645
AccII CGCG 2 cut(s) 435, 962
AccIII TCCGGA 1 cut(s) 402
AciI CCGC 4 cut(s) 36, 132, 433, 608
AclI AACGTT 1 cut(s) 543
AclWI GGATC 3 cut(s) 363, 610, 1499
AcsI RAATTY 3 cut(s) 116, 343, 1273
AcyI GRCGYC 1 cut(s) 1290
AfaI GTAC 6 cut(s) 218, 410, 488, 938, 1210, 1658
AfiI CCNNNNNNNGG 2 cut(s) 309, 439
AflIII ACRYGT 3 cut(s) 213, 1457, 1665
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
AluBI AGCT 9 cut(s) 196, 277, 364, 420, 887, 1193, 1421, 1442, 1620
AluI AGCT 9 cut(s) 196, 277, 364, 420, 887, 1193, 1421, 1442, 1620
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 4 cut(s) 1484, 1537, 1564, 1591
AlwI GGATC 3 cut(s) 363, 610, 1499
AlwNI CAGNNNCTG 1 cut(s) 1123
Aor13HI TCCGGA 1 cut(s) 402
AoxI GGCC 3 cut(s) 288, 1012, 1284
ApeKI GCWGC 7 cut(s) 33, 129, 361, 765, 948, 1080, 1193
ApoI RAATTY 3 cut(s) 116, 343, 1273
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 288, 442, 712
AsuC2I CCSGG 3 cut(s) 287, 304, 335
AsuHPI GGTGA 5 cut(s) 929, 1531, 1558, 1585, 1612
AsuII TTCGAA 1 cut(s) 1338
AvaII GGWCC 2 cut(s) 442, 712
BanI GGYRCC 3 cut(s) 497, 858, 1645
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 4 cut(s) 318, 1314, 1347, 1686
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 1422
BbvI GCAGC 7 cut(s) 45, 141, 373, 752, 960, 1092, 1180
BccI CCATC 4 cut(s) 94, 1011, 1636, 1666
BcnI CCSGG 3 cut(s) 287, 304, 335
BcoDI GTCTC 4 cut(s) 1484, 1537, 1564, 1591
BfaI CTAG 4 cut(s) 696, 855, 1190, 1476
BfmI CTRYAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 113
BlpI GCTNAGC 2 cut(s) 416, 476
BmcAI AGTACT 2 cut(s) 410, 1210
Bme1390I CCNGG 3 cut(s) 287, 304, 335
Bme18I GGWCC 2 cut(s) 442, 712
BmgT120I GGNCC 3 cut(s) 288, 442, 712
BmiI GGNNCC 3 cut(s) 499, 860, 1647
BmrFI CCNGG 3 cut(s) 287, 304, 335
BmsI GCATC 2 cut(s) 1110, 1495
BpiI GAAGAC 4 cut(s) 318, 1314, 1347, 1686
BpmI CTGGAG 2 cut(s) 513, 1007
Bpu10I CCTNAGC 1 cut(s) 1422
Bpu1102I GCTNAGC 2 cut(s) 416, 476
Bpu14I TTCGAA 1 cut(s) 1338
BpuEI CTTGAG 5 cut(s) 701, 797, 1076, 1636, 1642
BpuMI CCSGG 3 cut(s) 287, 304, 335
BsaAI YACGTR 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 1290
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 1447, 1477
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 439
Bse1I ACTGG 2 cut(s) 501, 1216
Bse3DI GCAATG 3 cut(s) 314, 402, 1643
Bse8I GATNNNNATC 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 4 cut(s) 211, 561, 1101, 1647
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 309, 439
BseMI GCAATG 3 cut(s) 314, 402, 1643
BseMII CTCAG 7 cut(s) 389, 512, 635, 1048, 1387, 1413, 1495
BseNI ACTGG 2 cut(s) 501, 1216
BseRI GAGGAG 3 cut(s) 248, 251, 254
BseXI GCAGC 7 cut(s) 45, 141, 373, 752, 960, 1092, 1180
Bsh1236I CGCG 2 cut(s) 435, 962
Bsh1285I CGRYCG 1 cut(s) 974
BshFI GGCC 3 cut(s) 290, 1014, 1286
BshNI GGYRCC 3 cut(s) 497, 858, 1645
BsiEI CGRYCG 1 cut(s) 974
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 4 cut(s) 286, 304, 335, 403
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 2 cut(s) 309, 439
BsmAI GTCTC 4 cut(s) 1484, 1537, 1564, 1591
BsmFI GGGAC 1 cut(s) 596
BsmI GAATGC 1 cut(s) 1270
BsnI GGCC 3 cut(s) 290, 1014, 1286
Bsp119I TTCGAA 1 cut(s) 1338
Bsp1286I GDGCHC 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 402
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 5 cut(s) 355, 558, 615, 971, 1504
Bsp1720I GCTNAGC 2 cut(s) 416, 476
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 4 cut(s) 36, 132, 433, 608
BspANI GGCC 3 cut(s) 290, 1014, 1286
BspCNI CTCAG 7 cut(s) 388, 513, 636, 1047, 1386, 1414, 1494
BspEI TCCGGA 1 cut(s) 402
BspFNI CGCG 2 cut(s) 435, 962
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 3 cut(s) 499, 860, 1647
BspMAI CTGCAG 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 3 cut(s) 363, 610, 1499
BspT104I TTCGAA 1 cut(s) 1338
BspT107I GGYRCC 3 cut(s) 497, 858, 1645
BsrDI GCAATG 3 cut(s) 314, 402, 1643
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 2 cut(s) 501, 1216
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 5 cut(s) 355, 558, 615, 971, 1504
BssNI GRCGYC 1 cut(s) 1290
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 1154, 1162, 1690
Bst6I CTCTTC 3 cut(s) 1540, 1567, 1594
BstACI GRCGYC 1 cut(s) 1290
BstAUI TGTACA 1 cut(s) 936
BstBAI YACGTR 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 1338
BstC8I GCNNGC 2 cut(s) 279, 292
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 4 cut(s) 211, 561, 1101, 1647
BstFNI CGCG 2 cut(s) 435, 962
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 5 cut(s) 358, 561, 618, 974, 1507
BstMAI GTCTC 4 cut(s) 1484, 1537, 1564, 1591
BstMBI GATC 5 cut(s) 355, 558, 615, 971, 1504
BstMCI CGRYCG 1 cut(s) 974
BstMWI GCNNNNNNNGC 2 cut(s) 287, 1011
BstNSI RCATGY 4 cut(s) 943, 1005, 1461, 1669
BstSCI CCNGG 3 cut(s) 285, 302, 333
BstSFI CTRYAG 1 cut(s) 359
BstUI CGCG 2 cut(s) 435, 962
BstV1I GCAGC 7 cut(s) 45, 141, 373, 752, 960, 1092, 1180
BstV2I GAAGAC 4 cut(s) 318, 1314, 1347, 1686
BstX2I RGATCY 2 cut(s) 355, 1504
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 2 cut(s) 355, 1504
BsuRI GGCC 3 cut(s) 290, 1014, 1286
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 4 cut(s) 211, 561, 1101, 1647
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 279, 292
CaiI CAGNNNCTG 1 cut(s) 1123
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 3 cut(s) 288, 442, 712
CseI GACGC 2 cut(s) 951, 1155
Csp6I GTAC 6 cut(s) 217, 409, 487, 937, 1209, 1657
CspCI CAANNNNNGTGG 2 cut(s) 302, 337
CviQI GTAC 6 cut(s) 217, 409, 487, 937, 1209, 1657
DpnI GATC 5 cut(s) 357, 560, 617, 973, 1506
DpnII GATC 5 cut(s) 355, 558, 615, 971, 1504
DraI TTTAAA 1 cut(s) 1512
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 1540, 1567, 1594
EarI CTCTTC 3 cut(s) 1540, 1567, 1594
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 442, 712
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 201
FaqI GGGAC 1 cut(s) 596
FokI GGATG 4 cut(s) 218, 548, 1088, 1654
FriOI GRGCYC 1 cut(s) 198
FspBI CTAG 4 cut(s) 696, 855, 1190, 1476
GlaI GCGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 513, 1007
HaeIII GGCC 3 cut(s) 290, 1014, 1286
HapII CCGG 4 cut(s) 286, 304, 335, 403
HgaI GACGC 2 cut(s) 951, 1155
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 1290
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 3 cut(s) 247, 792, 1294
HindII GTYRAC 3 cut(s) 247, 792, 1294
HinfI GANTC 9 cut(s) 371, 892, 899, 909, 920, 1120, 1225, 1385, 1628
HpaI GTTAAC 1 cut(s) 792
HpaII CCGG 4 cut(s) 286, 304, 335, 403
HphI GGTGA 5 cut(s) 929, 1531, 1558, 1585, 1612
Hpy166II GTNNAC 7 cut(s) 211, 219, 247, 751, 792, 1145, 1294
Hpy188I TCNGA 7 cut(s) 183, 645, 1096, 1119, 1125, 1263, 1376
Hpy8I GTNNAC 7 cut(s) 211, 219, 247, 751, 792, 1145, 1294
Hpy99I CGWCG 2 cut(s) 967, 1292
HpyAV CCTTC 9 cut(s) 20, 433, 701, 780, 1276, 1510, 1537, 1564, 1591
HpyCH4III ACNGT 3 cut(s) 1154, 1162, 1690
HpyCH4IV ACGT 4 cut(s) 215, 543, 738, 1290
HpyCH4V TGCA 9 cut(s) 33, 122, 129, 361, 816, 847, 943, 1080, 1636
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 1011
HpySE526I ACGT 4 cut(s) 215, 543, 738, 1290
Hsp92I GRCGYC 1 cut(s) 1290
HspAI GCGC 1 cut(s) 39
Kpn2I TCCGGA 1 cut(s) 402
KspAI GTTAAC 1 cut(s) 792
Kzo9I GATC 5 cut(s) 355, 558, 615, 971, 1504
LmnI GCTCC 3 cut(s) 201, 336, 1273
Lsp1109I GCAGC 7 cut(s) 45, 141, 373, 752, 960, 1092, 1180
LweI GCATC 2 cut(s) 1110, 1495
MaeI CTAG 4 cut(s) 696, 855, 1190, 1476
MaeII ACGT 4 cut(s) 215, 543, 738, 1290
MaeIII GTNAC 1 cut(s) 734
MalI GATC 5 cut(s) 357, 560, 617, 973, 1506
MboI GATC 5 cut(s) 355, 558, 615, 971, 1504
MflI RGATCY 2 cut(s) 355, 1504
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 8 cut(s) 116, 227, 343, 662, 756, 849, 873, 1273
MlyI GAGTC 2 cut(s) 1114, 1234
MmeI TCCRAC 2 cut(s) 534, 1275
MroI TCCGGA 1 cut(s) 402
MslI CAYNNNNRTG 3 cut(s) 206, 1664, 1670
MspA1I CMGCKG 3 cut(s) 36, 132, 1442
MspI CCGG 4 cut(s) 286, 304, 335, 403
MspR9I CCNGG 3 cut(s) 287, 304, 335
Mva1269I GAATGC 1 cut(s) 1270
MvnI CGCG 2 cut(s) 435, 962
MwoI GCNNNNNNNGC 2 cut(s) 287, 1011
NciI CCSGG 3 cut(s) 287, 304, 335
NcoI CCATGG 1 cut(s) 201
NdeII GATC 5 cut(s) 355, 558, 615, 971, 1504
NlaIV GGNNCC 3 cut(s) 499, 860, 1647
NmeAIII GCCGAG 1 cut(s) 1248
NspI RCATGY 4 cut(s) 943, 1005, 1461, 1669
NspV TTCGAA 1 cut(s) 1338
PagI TCATGA 1 cut(s) 1024
PciI ACATGT 2 cut(s) 1457, 1665
PcsI WCGNNNNNNNCGW 2 cut(s) 794, 971
PctI GAATGC 1 cut(s) 1270
PfeI GAWTC 7 cut(s) 371, 892, 899, 909, 920, 1385, 1628
Ple19I CGATCG 1 cut(s) 974
PleI GAGTC 2 cut(s) 1114, 1233
PpsI GAGTC 2 cut(s) 1114, 1233
Ppu21I YACGTR 1 cut(s) 216
PscI ACATGT 2 cut(s) 1457, 1665
PsiI TTATAA 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 499, 860, 1647
PspPI GGNCC 3 cut(s) 288, 442, 712
PstI CTGCAG 1 cut(s) 363
PstNI CAGNNNCTG 1 cut(s) 1123
PsuI RGATCY 2 cut(s) 355, 1504
PvuI CGATCG 1 cut(s) 974
PvuII CAGCTG 1 cut(s) 1442
RsaI GTAC 6 cut(s) 218, 410, 488, 938, 1210, 1658
RsaNI GTAC 6 cut(s) 217, 409, 487, 937, 1209, 1657
RseI CAYNNNNRTG 3 cut(s) 206, 1664, 1670
SacI GAGCTC 1 cut(s) 198
Sau3AI GATC 5 cut(s) 355, 558, 615, 971, 1504
Sau96I GGNCC 3 cut(s) 288, 442, 712
ScaI AGTACT 2 cut(s) 410, 1210
SchI GAGTC 2 cut(s) 1114, 1234
ScrFI CCNGG 3 cut(s) 287, 304, 335
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 1110, 1495
SfcI CTRYAG 1 cut(s) 359
SfuI TTCGAA 1 cut(s) 1338
SinI GGWCC 2 cut(s) 442, 712
SmiMI CAYNNNNRTG 3 cut(s) 206, 1664, 1670
SmlI CTYRAG 5 cut(s) 716, 776, 1055, 1615, 1621
SmoI CTYRAG 5 cut(s) 716, 776, 1055, 1615, 1621
Sse9I AATT 8 cut(s) 116, 227, 343, 662, 756, 849, 873, 1273
SsiI CCGC 4 cut(s) 36, 132, 433, 608
SspMI CTAG 4 cut(s) 696, 855, 1190, 1476
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 285, 302, 333
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 1154, 1162, 1690
TaiI ACGT 4 cut(s) 218, 546, 741, 1293
TaqI TCGA 5 cut(s) 24, 348, 970, 996, 1338
TasI AATT 8 cut(s) 116, 227, 343, 662, 756, 849, 873, 1273
TatI WGTACW 3 cut(s) 408, 936, 1208
TauI GCSGC 3 cut(s) 39, 135, 610
TfiI GAWTC 7 cut(s) 371, 892, 899, 909, 920, 1385, 1628
TscAI CASTG 1 cut(s) 391
TseI GCWGC 7 cut(s) 33, 129, 361, 765, 948, 1080, 1193
TspDTI ATGAA 5 cut(s) 74, 170, 180, 1013, 1431
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 442, 712
XapI RAATTY 3 cut(s) 116, 343, 1273
XceI RCATGY 4 cut(s) 943, 1005, 1461, 1669
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
XspI CTAG 4 cut(s) 696, 855, 1190, 1476
ZraI GACGTC 1 cut(s) 1291
ZrmI AGTACT 2 cut(s) 410, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.