Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

15000029 .. 15000784

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTACCAAGAGAAAAACTCCCATAGAAAACACAAATTCAAATAAAAAGCTCCAAACCCTAGAGTACTATGAATCAAGGGAAGATGATCACGATCGTGACCGAGAAGACGTCACAATACCTAGCTTTCCTGGCCTTGTTATCGATCAAATCCTCCAACACCTTCCCACTACACTTGCCGTAAGCGTGAGCATATTTTCTAAGCAATGGAAAGGTGTATGGTCTTCGGTCCCCGTATTAGATTTTGACGAGGGCGAGCCCTATGATAACGACGAAAAGCTCGAAAATCTTCGACGGAAGAAGTTCATTAAATTCTTAAGAGGGTGTTTGAAATTTCGTGAGAAAGACAAGTGCTTGGATAAGTTCAGGCTTCGCATGAGATACCGTGGGAAAAGTAGAAACATAGAAAAGTGGTTGAGCTTTGCAATTGAGAGAAGCGTCAAAGTGTTAGAGATCAGTCTTCCAAGAAAACCTAAATTCAAATACTATTGCCTATCCAAGACCATTCTTAATGCAAAATCTATAACAACCTTAAATTTGGAGAGTTTGAGAATAACTGATGACAGCACATCTCATCCCATAAGCCTTCCATCTGTGAAAACTTTGTCACTCAAAACTGTGCACTTTGGTCGCCGGGCCTTCTCCAATTTAATTTCACGGTGCCCTTCTATCGAGTGCTTGACACTAATTTCGTGTAATTTTGCCATCTTGAATGGAACAGTTAAAGTTTCGTTTTGCAGTCTTGAATCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

252

Amino Acids

29.12

Weight (kDa)

9.51

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	660
AcsI	RAATTY	5 cut(s)	37, 311, 332, 476, 535
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	316
AgsI	TTSAA	5 cut(s)	42, 331, 481, 712, 746
AjnI	CCWGG	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	52, 126, 280, 420
AluI	AGCT	4 cut(s)	52, 126, 280, 420
Alw21I	GWGCWC	1 cut(s)	624
Alw44I	GTGCAC	1 cut(s)	620
AoxI	GGCC	2 cut(s)	133, 636
ApaLI	GTGCAC	1 cut(s)	620
ApoI	RAATTY	5 cut(s)	37, 311, 332, 476, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	673, 705
Asp700I	GAANNNNTTC	2 cut(s)	288, 302
AspS9I	GGNCC	2 cut(s)	229, 636
AsuC2I	CCSGG	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	2 cut(s)	624, 665
BanI	GGYRCC	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	3 cut(s)	114, 216, 452
Bbv12I	GWGCWC	1 cut(s)	624
BccI	CCATC	2 cut(s)	598, 713
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	635
BfaI	CTAG	2 cut(s)	62, 123
BfrI	CTTAAG	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	132, 635
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	229, 636
BmiI	GGNNCC	2 cut(s)	231, 662
BmrFI	CCNGG	2 cut(s)	132, 635
BpiI	GAAGAC	3 cut(s)	114, 216, 452
BplI	GAGNNNNNCTC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	635
Bsa29I	ATCGAT	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	574
BseJI	GATNNNNATC	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	212
BseSI	GKGCMC	2 cut(s)	624, 665
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	135, 638
BshNI	GGYRCC	1 cut(s)	660
BshVI	ATCGAT	1 cut(s)	144
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	135, 638
Bsp1286I	GDGCHC	3 cut(s)	261, 624, 665
Bsp143I	GATC	4 cut(s)	88, 94, 145, 453
BspANI	GGCC	2 cut(s)	135, 638
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	231, 662
BspT107I	GGYRCC	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	88, 94, 145, 453
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	386, 619, 660, 721
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	574
BstKTI	GATC	4 cut(s)	91, 97, 148, 456
BstMBI	GATC	4 cut(s)	88, 94, 145, 453
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	130, 633
BstSLI	GKGCMC	2 cut(s)	624, 665
BstV2I	GAAGAC	3 cut(s)	114, 216, 452
Bsu15I	ATCGAT	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	135, 638
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	229, 636
ClaI	ATCGAT	1 cut(s)	144
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	4 cut(s)	90, 96, 147, 455
DpnII	GATC	4 cut(s)	88, 94, 145, 453
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	1 cut(s)	379
FaiI	YATR	9 cut(s)	26, 72, 194, 220, 264, 377, 404, 524, 581
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	375
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	62, 123
HaeIII	GGCC	2 cut(s)	135, 638
HapII	CCGG	1 cut(s)	634
HgaI	GACGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	2 cut(s)	74, 746
HpaII	CCGG	1 cut(s)	634
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188III	TCNNGA	5 cut(s)	92, 98, 338, 709, 743
Hpy8I	GTNNAC	1 cut(s)	622
Hpy99I	CGWCG	2 cut(s)	275, 297
HpyAV	CCTTC	4 cut(s)	173, 596, 649, 675
HpyCH4III	ACNGT	4 cut(s)	386, 619, 660, 721
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	425, 515, 622, 738
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 94, 145, 453
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	117, 144, 352, 647
MaeI	CTAG	2 cut(s)	62, 123
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	98, 112, 606
MalI	GATC	4 cut(s)	90, 96, 147, 455
MboI	GATC	4 cut(s)	88, 94, 145, 453
MboII	GAAGA	6 cut(s)	95, 119, 216, 281, 310, 452
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	3 cut(s)	261, 624, 665
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	3 cut(s)	164, 244, 314
MroXI	GAANNNNTTC	2 cut(s)	288, 302
MseI	TTAA	6 cut(s)	309, 317, 510, 533, 650, 723
MslI	CAYNNNNRTG	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	316
MspI	CCGG	1 cut(s)	634
MspR9I	CCNGG	2 cut(s)	132, 635
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	635
NdeII	GATC	4 cut(s)	88, 94, 145, 453
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	231, 662
NmuCI	GTSAC	3 cut(s)	98, 112, 606
OliI	CACNNNNGTG	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdmI	GAANNNNTTC	2 cut(s)	288, 302
PfeI	GAWTC	2 cut(s)	74, 746
Ple19I	CGATCG	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	231, 662
PspPI	GGNCC	2 cut(s)	229, 636
PvuI	CGATCG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	6 cut(s)	309, 317, 510, 533, 650, 723
Sau3AI	GATC	4 cut(s)	88, 94, 145, 453
Sau96I	GGNCC	2 cut(s)	229, 636
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	132, 635
SduI	GDGCHC	3 cut(s)	261, 624, 665
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SspMI	CTAG	2 cut(s)	62, 123
StyD4I	CCNGG	2 cut(s)	130, 633
TaaI	ACNGT	4 cut(s)	386, 619, 660, 721
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	4 cut(s)	144, 282, 292, 672
TaqII	GACCGA	2 cut(s)	117, 217
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	74, 746
Tru1I	TTAA	6 cut(s)	309, 317, 510, 533, 650, 723
Tru9I	TTAA	6 cut(s)	309, 317, 510, 533, 650, 723
TseFI	GTSAC	3 cut(s)	98, 112, 606
Tsp45I	GTSAC	3 cut(s)	98, 112, 606
TspDTI	ATGAA	2 cut(s)	87, 295
TspGWI	ACGGA	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	5 cut(s)	37, 311, 332, 476, 535
XmnI	GAANNNNTTC	2 cut(s)	288, 302
XspI	CTAG	2 cut(s)	62, 123
ZraI	GACGTC	1 cut(s)	112
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.