pycom10g23240

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000687
Physical Location & Seq
Forward (+)
25446019 .. 25446309
291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23240.1

Sequence Viewer

Length: 291 bp
ATGAGCAAAGAAACAGCAAGAAGATCAAAGGCAGAACGCAAGGCAGACAAAACAGGTAGCAACAACGCAAACATGGATAACAATCTCAACATGGAAGACAAAACGCAAGAATATCAAGAACAATATGCCGCAATGGTCAAAAGTACACCCGAGTTACCTGATCTTGTTATCTGCCAGATTCTCCAACTCCTATCCACCAGATATGCCATACGGGCCAGCATACTCTCCAAGCAGTGGGAAAGGTGTTGTGCTAAGAAAGCACCAAAATCTTTTGGAACCAACTCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

97

Amino Acids

10.86

Weight (kDa)

9.27

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 51 - 86 7.8e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AciI CCGC 1 cut(s) 129
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 234
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 213
AvaI CYCGRG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 138
BshFI GGCC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 2 cut(s) 23, 160
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 2 cut(s) 23, 160
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 252
BstKTI GATC 2 cut(s) 26, 163
BstMBI GATC 2 cut(s) 23, 160
BstMWI GCNNNNNNNGC 2 cut(s) 212, 257
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 144
CviAII CATG 2 cut(s) 73, 91
CviJI RGCY 2 cut(s) 215, 288
CviKI_1 RGCY 2 cut(s) 215, 288
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 25, 162
DpnII GATC 2 cut(s) 23, 160
Eco88I CYCGRG 1 cut(s) 149
FaeI CATG 2 cut(s) 76, 94
FaiI YATR 6 cut(s) 74, 92, 126, 204, 209, 221
FatI CATG 2 cut(s) 72, 90
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 215
Hin1II CATG 2 cut(s) 76, 94
HinfI GANTC 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 257
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 76, 94
Kzo9I GATC 2 cut(s) 23, 160
LpnPI CCDG 5 cut(s) 39, 171, 188, 211, 229
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 25, 162
MboI GATC 2 cut(s) 23, 160
MboII GAAGA 2 cut(s) 33, 107
MmeI TCCRAC 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 212, 257
NdeII GATC 2 cut(s) 23, 160
NlaIII CATG 2 cut(s) 76, 94
NlaIV GGNNCC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 213
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 23, 160
Sau96I GGNCC 1 cut(s) 213
SetI ASST 4 cut(s) 58, 160, 245, 290
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SsiI CCGC 1 cut(s) 129
TatI WGTACW 1 cut(s) 143
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 1 cut(s) 239
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.