Rh7AG071400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000687
Physical Location & Seq
Reverse (-)
5074603 .. 5075051
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG071400.1

Sequence Viewer

Length: 321 bp
ATGAACTGTCCAAATTTGGAGGAGGCTAAAATCATAGTTCGGGATTGGATACCCGGAGACGGGAAATGGTGGCATTCTTGTCTGATACTCGTTCTTGGAAGTTTTGATTGCTGCAAAAAATTAAGTCTAAATTTTAATAAAGCCGAGGCTCTTATATTTCGAGAAGAAATGAGAGGCAAATGCTCTCCACCATTACCAACTCTGGATTATCTTGAAGTAGAGATAAGTAATACTTCTACAACAGCAGTTCCAGATTCTGTCTTGTTGGACTCGTTGCGTTGGATGGCACCCTCTTCTCAAGTTTCGATCTGCAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

106

Amino Acids

11.94

Weight (kDa)

5.77

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AcsI RAATTY 2 cut(s) 13, 130
AfiI CCNNNNNNNGG 2 cut(s) 59, 60
AgsI TTSAA 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 51
AlwNI CAGNNNCTG 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 13, 130
AsuC2I CCSGG 1 cut(s) 54
BanI GGYRCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 277
BciVI GTATCC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 51
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 60
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 59, 60
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 59, 60
BsmAI GTCTC 1 cut(s) 51
BsmBI CGTCTC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 298
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 98
BsuI GTATCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 257
CviJI RGCY 3 cut(s) 26, 143, 149
CviKI_1 RGCY 3 cut(s) 26, 143, 149
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 51
FaiI YATR 2 cut(s) 35, 155
FalI AAGNNNNNCTT 2 cut(s) 217, 249
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 112
HapII CCGG 1 cut(s) 54
HinfI GANTC 2 cut(s) 254, 269
HpaII CCGG 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 5 cut(s) 41, 161, 203, 212, 251
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 114, 312
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 3 cut(s) 67, 188, 264
Lsp1109I GCAGC 1 cut(s) 98
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 2 cut(s) 176, 285
MluCI AATT 3 cut(s) 13, 119, 130
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 246, 260
MnlI CCTC 5 cut(s) 13, 16, 139, 167, 301
MseI TTAA 2 cut(s) 122, 135
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 54
NdeII GATC 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 169
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 113
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 257
SaqAI TTAA 2 cut(s) 122, 135
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 1 cut(s) 306
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 3 cut(s) 13, 119, 130
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 160, 305
TasI AATT 3 cut(s) 13, 119, 130
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 122, 135
Tru9I TTAA 2 cut(s) 122, 135
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 13, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.