RLG00000021796

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000687
Physical Location & Seq
Reverse (-)
78380306 .. 78381021
716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021796

Sequence Viewer

Length: 624 bp
ATGCATTGCGGCTCAGTGCGTTTTCAAATTGAAGCTACGAATCTTAAATCTTTTAAACTACATGGAGGGCTGTACAGCTGGGGCAACGTTGACATTGCCTCTTGTAAAAATGTTAAGAGCCTAGAGTTCTTTGATACATGCTTGACAGAAACATGGCTTAGAGGCTTTGCTTCAACGTTTCCCCTCCTGGAGAGTTTGGTTTTACATGACTACTGGGAAGGACGAATGAAAAGTACAAAAATCATTCCACACTTATTGGATGCTACAATTTCAATCCATATAGGGAGGGAGCCTAGCTCGTCTTGGAATCATCTTCGTCTGATTAGATTTCTTGAGAATTTTGATTGCTCCAGAAAATTAAGTCTGCATGCTGCTGCTCCTGAGGCTCTCATCTTTCCAGAAGAAGTGAGAAGGTATCCACCATTACCAAACCTCGAGCATCTTCAGGTAGAGATTAGTTTTACAACCACAGTAAAGATTTTCTCATTGCTGATGGACTCCTTGCATTGGATGGCACCATCTGCTGCGGTTTCTATCCACAGAACAGATTGCGATCCATATCCAGAAACAGAATTACTCAAAACAATAATCGGTTCATTTATGACAACTGATCTCGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

208

Amino Acids

23.56

Weight (kDa)

6.19

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 514
AciI CCGC 2 cut(s) 9, 527
AclI AACGTT 2 cut(s) 87, 176
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 74, 235
AfiI CCNNNNNNNGG 1 cut(s) 507
AgsI TTSAA 4 cut(s) 26, 32, 174, 273
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 3 cut(s) 35, 78, 297
AluI AGCT 3 cut(s) 35, 78, 297
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 434
ApeKI GCWGC 3 cut(s) 371, 374, 524
ApoI RAATTY 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 434
AxyI CCTNAGG 1 cut(s) 381
BanI GGYRCC 1 cut(s) 514
BbvI GCAGC 3 cut(s) 358, 361, 511
BccI CCATC 3 cut(s) 487, 505, 526
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 1 cut(s) 426
BfaI CTAG 2 cut(s) 122, 294
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 4 cut(s) 10, 372, 375, 525
BlsI GCNGC 4 cut(s) 11, 373, 376, 526
Bme1390I CCNGG 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 434
BmiI GGNNCC 2 cut(s) 291, 516
BmrFI CCNGG 1 cut(s) 188
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 250, 448
BmuI ACTGGG 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 2 cut(s) 209, 334
BpuEI CTTGAG 1 cut(s) 353
BsaBI GATNNNNATC 2 cut(s) 552, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 507
Bse1I ACTGG 1 cut(s) 218
Bse21I CCTNAGG 1 cut(s) 381
Bse3DI GCAATG 3 cut(s) 4, 93, 485
Bse8I GATNNNNATC 2 cut(s) 552, 558
BseBI CCWGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 265, 516
BseJI GATNNNNATC 2 cut(s) 552, 558
BseLI CCNNNNNNNGG 1 cut(s) 507
BseMI GCAATG 3 cut(s) 4, 93, 485
BseMII CTCAG 2 cut(s) 27, 372
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 358, 361, 511
BseYI CCCAGC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 514
BsiHKCI CYCGRG 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 434
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 553, 610
BspACI CCGC 2 cut(s) 9, 527
BspCNI CTCAG 2 cut(s) 26, 373
BspLI GGNNCC 2 cut(s) 291, 516
BspPI GGATC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 514
BsrDI GCAATG 3 cut(s) 4, 93, 485
BsrGI TGTACA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 218
BssMI GATC 2 cut(s) 553, 610
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 472
BstAPI GCANNNNNTGC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 13, 158, 381
BstF5I GGATG 2 cut(s) 265, 516
BstKTI GATC 2 cut(s) 556, 613
BstMBI GATC 2 cut(s) 553, 610
BstMWI GCNNNNNNNGC 2 cut(s) 383, 521
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 2 cut(s) 141, 371
BstSCI CCNGG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 358, 361, 511
Bsu36I CCTNAGG 1 cut(s) 381
BsuI GTATCC 1 cut(s) 426
BtsCI GGATG 2 cut(s) 265, 516
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 369
Csp6I GTAC 2 cut(s) 73, 234
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 5 cut(s) 62, 138, 153, 206, 368
CviQI GTAC 2 cut(s) 73, 234
DdeI CTNAG 3 cut(s) 13, 158, 381
DpnI GATC 2 cut(s) 555, 612
DpnII GATC 2 cut(s) 553, 610
DraI TTTAAA 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 5 cut(s) 65, 141, 156, 209, 371
FaiI YATR 9 cut(s) 63, 139, 154, 207, 279, 281, 369, 559, 602
FatI CATG 5 cut(s) 61, 137, 152, 205, 367
Fnu4HI GCNGC 4 cut(s) 10, 372, 375, 525
FokI GGATG 2 cut(s) 272, 523
Fsp4HI GCNGC 4 cut(s) 10, 372, 375, 525
FspBI CTAG 2 cut(s) 122, 294
GluI GCNGC 4 cut(s) 10, 372, 375, 525
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 2 cut(s) 209, 334
Hin1II CATG 5 cut(s) 65, 141, 156, 209, 371
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 3 cut(s) 40, 307, 497
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 5 cut(s) 332, 351, 380, 398, 563
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 212, 405
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 2 cut(s) 87, 176
HpyCH4V TGCA 3 cut(s) 4, 367, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 521
HpyF3I CTNAG 3 cut(s) 13, 158, 381
HpySE526I ACGT 2 cut(s) 87, 176
Hsp92II CATG 5 cut(s) 65, 141, 156, 209, 371
Kzo9I GATC 2 cut(s) 553, 610
LmnI GCTCC 3 cut(s) 289, 353, 382
LpnPI CCDG 9 cut(s) 64, 173, 199, 200, 364, 393, 411, 431, 576
Lsp1109I GCAGC 3 cut(s) 358, 361, 511
LweI GCATC 2 cut(s) 250, 448
MaeI CTAG 2 cut(s) 122, 294
MaeII ACGT 2 cut(s) 87, 176
MalI GATC 2 cut(s) 555, 612
MboI GATC 2 cut(s) 553, 610
MboII GAAGA 3 cut(s) 305, 413, 434
MluCI AATT 5 cut(s) 27, 267, 337, 356, 572
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 7 cut(s) 59, 109, 155, 194, 279, 376, 443
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 45, 54, 114, 359
MspA1I CMGCKG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 383, 521
NdeII GATC 2 cut(s) 553, 610
NlaIII CATG 5 cut(s) 65, 141, 156, 209, 371
NlaIV GGNNCC 2 cut(s) 291, 516
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 141, 371
PaeI GCATGC 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 434
PfeI GAWTC 2 cut(s) 40, 307
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 4 cut(s) 11, 373, 376, 526
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Psp1406I AACGTT 2 cut(s) 87, 176
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 291, 516
PspXI VCTCGAGB 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 2 cut(s) 74, 235
RsaNI GTAC 2 cut(s) 73, 234
SaqAI TTAA 4 cut(s) 45, 54, 114, 359
SatI GCNGC 4 cut(s) 10, 372, 375, 525
Sau3AI GATC 2 cut(s) 553, 610
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 188
SetI ASST 8 cut(s) 37, 80, 90, 179, 299, 416, 435, 450
SfaNI GCATC 2 cut(s) 250, 448
Sfr274I CTCGAG 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 332, 434
SmoI CTYRAG 2 cut(s) 332, 434
SphI GCATGC 1 cut(s) 371
Sse9I AATT 5 cut(s) 27, 267, 337, 356, 572
SsiI CCGC 2 cut(s) 9, 527
SspMI CTAG 2 cut(s) 122, 294
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 2 cut(s) 90, 179
TaqI TCGA 1 cut(s) 435
TasI AATT 5 cut(s) 27, 267, 337, 356, 572
TatI WGTACW 2 cut(s) 72, 233
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 40, 307
Tru1I TTAA 4 cut(s) 45, 54, 114, 359
Tru9I TTAA 4 cut(s) 45, 54, 114, 359
TscAI CASTG 1 cut(s) 21
TseI GCWGC 3 cut(s) 371, 374, 524
TspDTI ATGAA 2 cut(s) 242, 585
TspRI CASTG 1 cut(s) 21
XapI RAATTY 1 cut(s) 337
XceI RCATGY 2 cut(s) 141, 371
XhoI CTCGAG 1 cut(s) 434
XspI CTAG 2 cut(s) 122, 294
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.